Wall clock time and date at job start Tue Mar 31 2020 20:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00232 * 2 1 4 4 H 1.48506 * 109.46879 * 239.99939 * 3 2 1 5 5 H 1.48496 * 109.46984 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47083 * 120.00543 * 3 2 1 7 7 C 1.38815 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00273 * 204.58082 * 7 2 1 9 9 N 1.36937 * 120.00041 * 24.57551 * 7 2 1 10 10 C 1.46503 * 119.99845 * 10.03198 * 9 7 2 11 11 C 1.50700 * 109.47245 * 268.30504 * 10 9 7 12 12 O 1.20825 * 120.00389 * 0.02562 * 11 10 9 13 13 O 1.34237 * 119.99857 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00293 * 190.03856 * 9 7 2 15 15 C 1.50695 * 109.47511 * 89.99404 * 14 9 7 16 16 N 1.30389 * 126.18352 * 89.97792 * 15 14 9 17 17 N 1.28663 * 109.52158 * 180.02562 * 16 15 14 18 18 C 1.31233 * 109.25044 * 0.02562 * 17 16 15 19 19 C 1.47849 * 126.37744 * 179.97438 * 18 17 16 20 20 C 1.39577 * 120.14026 * 180.02562 * 19 18 17 21 21 C 1.37941 * 119.88633 * 179.97438 * 20 19 18 22 22 C 1.38355 * 120.15974 * 359.97438 * 21 20 19 23 23 C 1.38448 * 120.27360 * 359.79369 * 22 21 20 24 24 Cl 1.73595 * 119.94195 * 180.23133 * 23 22 21 25 25 C 1.38106 * 120.11302 * 0.46015 * 23 22 21 26 26 O 1.34410 * 126.19132 * 270.31396 * 15 14 9 27 27 H 0.97005 * 119.99610 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47154 * 28.30990 * 10 9 7 29 29 H 1.09011 * 109.46921 * 148.30750 * 10 9 7 30 30 H 0.96704 * 116.99506 * 179.97438 * 13 11 10 31 31 H 1.09006 * 109.46494 * 329.99483 * 14 9 7 32 32 H 1.09002 * 109.47223 * 210.00187 * 14 9 7 33 33 H 1.08002 * 120.05696 * 0.02562 * 20 19 18 34 34 H 1.08009 * 119.92562 * 180.02562 * 21 20 19 35 35 H 1.08000 * 119.86457 * 180.02562 * 22 21 20 36 36 H 1.08004 * 120.07486 * 179.79399 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0168 -1.2449 0.3885 9 7 1.4185 -2.3342 -0.4943 10 6 0.1487 -2.2405 -1.2188 11 6 -0.9950 -2.4120 -0.2525 12 8 -0.7723 -2.5934 0.9211 13 8 -2.2611 -2.3633 -0.6957 14 6 2.0552 -3.6389 -0.2978 15 6 1.5650 -4.2482 0.9903 16 7 0.5251 -5.0226 1.1289 17 7 0.4006 -5.3583 2.3647 18 6 1.3643 -4.8047 3.0626 19 6 1.5806 -4.9386 4.5190 20 6 2.6536 -4.2887 5.1309 21 6 2.8502 -4.4169 6.4902 22 6 1.9863 -5.1874 7.2479 23 6 0.9170 -5.8311 6.6486 24 17 -0.1651 -6.7909 7.6085 25 6 0.7126 -5.7148 5.2877 26 8 2.1169 -4.0868 2.2052 27 1 -0.4850 0.8401 0.0004 28 1 0.0754 -1.2647 -1.6989 29 1 0.1043 -3.0226 -1.9768 30 1 -2.9610 -2.4791 -0.0384 31 1 3.1368 -3.5119 -0.2512 32 1 1.8020 -4.2957 -1.1300 33 1 3.3283 -3.6858 4.5412 34 1 3.6801 -3.9139 6.9644 35 1 2.1444 -5.2842 8.3119 36 1 -0.1198 -6.2199 4.8203 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833067155.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:22 Heat of formation + Delta-G solvation = -25.142286 kcal Electronic energy + Delta-G solvation = -26582.890324 eV Core-core repulsion = 22481.244741 eV Total energy + Delta-G solvation = -4101.645583 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.90171 -40.56456 -40.33783 -37.83199 -37.56211 -36.99261 -36.27415 -34.30409 -33.33999 -31.95766 -31.20422 -29.44570 -28.05345 -25.46570 -24.97235 -23.78470 -22.82288 -22.74244 -21.93663 -19.14374 -18.91295 -18.51477 -18.23840 -17.59301 -17.14773 -17.01703 -16.94437 -16.42451 -15.99794 -15.61739 -15.48642 -15.32032 -15.17695 -14.79311 -14.66821 -13.66924 -13.47551 -13.28412 -13.05452 -12.97839 -12.92787 -12.75106 -12.74952 -12.63265 -12.44445 -12.21189 -12.12017 -12.02532 -11.90728 -11.80765 -11.23052 -11.09504 -10.63851 -10.00792 -9.62774 -9.33176 -8.10381 -5.42969 -0.59391 0.02307 0.68914 0.91471 1.43118 1.49161 1.52538 1.55916 1.60183 2.06623 2.41419 2.51187 2.71872 2.85837 3.17942 3.40568 3.55941 3.71447 3.83762 3.92806 4.09673 4.23297 4.45749 4.53526 4.54412 4.60021 4.64521 4.74213 4.88459 5.00821 5.06926 5.12301 5.13477 5.24388 5.54973 5.56279 6.00664 6.13879 6.83140 7.40576 7.48046 7.68287 7.91677 8.97354 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.014224 B = 0.003435 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.058990 B = 8150.370408 C = 8900.277404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.039 4.039 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.300 1.300 6 H -0.282 1.282 7 C -0.277 4.277 8 H 0.093 0.907 9 N -0.553 5.553 10 C 0.180 3.820 11 C 0.480 3.520 12 O -0.550 6.550 13 O -0.537 6.537 14 C 0.217 3.783 15 C 0.177 3.823 16 N -0.319 5.319 17 N -0.299 5.299 18 C 0.171 3.829 19 C -0.021 4.021 20 C -0.089 4.089 21 C -0.091 4.091 22 C -0.081 4.081 23 C -0.041 4.041 24 Cl -0.056 7.056 25 C -0.078 4.078 26 O -0.228 6.228 27 H 0.254 0.746 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.397 0.603 31 H 0.115 0.885 32 H 0.130 0.870 33 H 0.139 0.861 34 H 0.182 0.818 35 H 0.175 0.825 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.488 -8.994 9.033 14.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.235 4.235 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.227 1.227 6 H -0.209 1.209 7 C -0.406 4.406 8 H 0.111 0.889 9 N -0.270 5.270 10 C 0.052 3.948 11 C 0.322 3.678 12 O -0.438 6.438 13 O -0.348 6.348 14 C 0.087 3.913 15 C -0.036 4.036 16 N -0.165 5.165 17 N -0.147 5.147 18 C -0.038 4.038 19 C -0.024 4.024 20 C -0.109 4.109 21 C -0.109 4.109 22 C -0.100 4.100 23 C -0.068 4.068 24 Cl -0.027 7.027 25 C -0.099 4.099 26 O -0.107 6.107 27 H 0.063 0.937 28 H 0.123 0.877 29 H 0.117 0.883 30 H 0.254 0.746 31 H 0.133 0.867 32 H 0.148 0.852 33 H 0.157 0.843 34 H 0.199 0.801 35 H 0.192 0.808 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.612 -9.600 8.754 14.152 hybrid contribution -0.203 1.594 1.017 1.902 sum 5.408 -8.006 9.771 13.741 Atomic orbital electron populations 1.70041 1.06754 1.26503 1.53318 1.25644 0.95848 1.01797 1.00217 0.85173 0.77423 0.78157 0.78604 1.18913 1.22671 1.20852 1.19724 0.97198 0.85467 1.38215 0.88903 1.44918 1.20515 1.01770 1.59823 1.20690 0.79815 1.03611 0.90657 1.25236 0.83298 0.69025 0.90260 1.90515 1.85154 1.47174 1.20983 1.84530 1.17949 1.85849 1.46440 1.20631 0.99654 0.85836 0.85157 1.31103 0.90936 0.93233 0.88304 1.74094 1.16416 1.16000 1.10032 1.74363 1.19607 1.22111 0.98604 1.25698 0.90067 0.93503 0.94570 1.17268 0.99297 1.02558 0.83239 1.21597 0.95387 0.97070 0.96841 1.21467 1.00228 0.97641 0.91563 1.21680 0.91526 0.94238 1.02512 1.20782 0.95614 0.99573 0.90809 1.98379 1.63631 1.70138 1.70544 1.20932 0.98769 0.97655 0.92513 1.84818 1.49943 1.57187 1.18744 0.93653 0.87697 0.88303 0.74604 0.86679 0.85199 0.84309 0.80094 0.80804 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.41 9.08 21.65 0.20 -50.22 16 2 C -0.04 -1.97 4.88 84.86 0.41 -1.55 16 3 Si 0.98 41.58 29.62 68.60 2.03 43.61 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.30 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.28 -13.63 9.70 84.03 0.81 -12.82 16 8 H 0.09 4.37 7.92 -2.91 -0.02 4.35 16 9 N -0.55 -24.60 2.10 -710.67 -1.49 -26.09 16 10 C 0.18 7.90 5.57 85.63 0.48 8.38 16 11 C 0.48 23.33 6.45 71.24 0.46 23.79 16 12 O -0.55 -30.94 14.46 21.97 0.32 -30.62 16 13 O -0.54 -22.59 13.42 -51.49 -0.69 -23.28 16 14 C 0.22 7.92 6.33 85.63 0.54 8.47 16 15 C 0.18 7.65 6.74 88.32 0.60 8.24 16 16 N -0.32 -14.72 11.16 -165.33 -1.84 -16.56 16 17 N -0.30 -13.65 11.92 -166.32 -1.98 -15.63 16 18 C 0.17 7.09 7.99 87.33 0.70 7.79 16 19 C -0.02 -0.70 5.87 -20.10 -0.12 -0.82 16 20 C -0.09 -2.26 9.73 22.52 0.22 -2.04 16 21 C -0.09 -1.55 10.03 22.23 0.22 -1.33 16 22 C -0.08 -1.35 9.82 22.35 0.22 -1.13 16 23 C -0.04 -0.93 6.31 22.29 0.14 -0.79 16 24 Cl -0.06 -1.15 28.95 -2.72 -0.08 -1.22 16 25 C -0.08 -2.29 9.48 22.55 0.21 -2.07 16 26 O -0.23 -9.88 10.67 -8.38 -0.09 -9.97 16 27 H 0.25 13.82 8.31 -92.70 -0.77 13.05 16 28 H 0.11 4.95 6.27 -2.39 -0.01 4.93 16 29 H 0.10 3.50 7.92 -2.38 -0.02 3.48 16 30 H 0.40 14.07 9.10 -74.05 -0.67 13.39 16 31 H 0.12 3.56 8.03 -2.38 -0.02 3.54 16 32 H 0.13 3.81 7.91 -2.39 -0.02 3.79 16 33 H 0.14 3.47 7.93 -2.91 -0.02 3.44 16 34 H 0.18 1.64 8.06 -2.91 -0.02 1.61 16 35 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.13 4.16 7.86 -2.91 -0.02 4.13 16 Total: -1.00 -73.73 338.99 1.76 -71.97 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.49 Total: 23.91 kcal Atomic # 6 Polarization: 29.20 SS G_CDS: 4.90 Total: 34.10 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -5.12 Total: -108.50 kcal Atomic # 8 Polarization: -63.41 SS G_CDS: -0.46 Total: -63.87 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.22 kcal Total: -73.73 1.76 -71.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067155.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.827 kcal (2) G-P(sol) polarization free energy of solvation -73.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds