Wall clock time and date at job start Tue Mar 31 2020 19:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86795 * 120.00081 * 2 1 4 4 H 1.48494 * 109.47336 * 274.65529 * 3 2 1 5 5 H 1.48499 * 109.47237 * 34.65824 * 3 2 1 6 6 H 1.48508 * 109.47003 * 154.65549 * 3 2 1 7 7 C 1.39893 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00062 * 162.15340 * 7 2 1 9 9 C 1.41218 * 120.00187 * 342.16798 * 7 2 1 10 10 C 1.40833 * 120.18279 * 155.13971 * 9 7 2 11 11 C 1.36435 * 119.81345 * 180.02562 * 10 9 7 12 12 C 1.39317 * 120.18361 * 0.02562 * 11 10 9 13 13 O 1.35670 * 119.81540 * 179.97438 * 12 11 10 14 14 S 1.52194 * 114.00237 * 89.99692 * 13 12 11 15 15 O 1.42096 * 106.40230 * 321.45788 * 14 13 12 16 16 O 1.42103 * 106.40506 * 188.53496 * 14 13 12 17 17 C 1.76206 * 107.21948 * 74.99922 * 14 13 12 18 18 C 1.35486 * 126.07629 * 269.69415 * 17 14 13 19 19 N 1.34959 * 108.98105 * 179.82792 * 18 17 14 20 20 H 0.97009 * 125.63166 * 180.19144 * 19 18 17 21 21 C 1.37691 * 108.73381 * 0.43071 * 19 18 17 22 22 C 1.46497 * 126.26707 * 179.73117 * 21 19 18 23 23 O 1.21620 * 119.99961 * 180.02562 * 22 21 19 24 24 O 1.34892 * 119.99565 * 0.02562 * 22 21 19 25 25 C 1.38001 * 107.47213 * 359.73994 * 21 19 18 26 26 C 1.39317 * 120.36412 * 0.24701 * 12 11 10 27 27 C 1.36438 * 120.18550 * 359.48622 * 26 12 11 28 28 H 0.96999 * 120.00171 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.09500 * 0.02562 * 10 9 7 30 30 H 1.07995 * 119.90847 * 179.97438 * 11 10 9 31 31 H 1.08001 * 125.50994 * 359.97432 * 18 17 14 32 32 H 0.96702 * 116.99509 * 180.02562 * 24 22 21 33 33 H 1.07996 * 126.51725 * 179.97438 * 25 21 19 34 34 H 1.08002 * 119.90380 * 179.72380 * 26 12 11 35 35 H 1.07997 * 120.09657 * 180.25719 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3919 2.1032 -1.3954 5 1 1.4930 2.6222 0.7962 6 1 3.5862 1.4136 0.5994 7 6 2.0083 -1.2115 0.0005 8 1 3.0493 -1.2342 -0.2861 9 6 1.3531 -2.4050 0.3756 10 6 1.8225 -3.6476 -0.0924 11 6 1.1834 -4.7959 0.2742 12 6 0.0691 -4.7415 1.1087 13 8 -0.5609 -5.8880 1.4682 14 16 -0.0207 -6.5174 2.7443 15 8 1.3891 -6.3429 2.7120 16 8 -0.6440 -7.7892 2.8595 17 6 -0.6111 -5.5500 4.0935 18 6 0.0150 -4.4819 4.6436 19 7 -0.7427 -3.9996 5.6509 20 1 -0.5236 -3.2357 6.2071 21 6 -1.8755 -4.7744 5.7622 22 6 -2.9565 -4.5943 6.7343 23 8 -3.9096 -5.3499 6.7309 24 8 -2.8949 -3.5904 7.6332 25 6 -1.8061 -5.7518 4.7904 26 6 -0.4050 -3.5160 1.5715 27 6 0.2258 -2.3588 1.2186 28 1 -0.4850 0.8400 -0.0004 29 1 2.6859 -3.6914 -0.7398 30 1 1.5418 -5.7495 -0.0841 31 1 0.9657 -4.0797 4.3257 32 1 -3.6315 -3.5118 8.2547 33 1 -2.5359 -6.5257 4.6040 34 1 -1.2721 -3.4822 2.2145 35 1 -0.1405 -1.4099 1.5816 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833069116.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:42 Heat of formation + Delta-G solvation = -136.648358 kcal Electronic energy + Delta-G solvation = -26453.667492 eV Core-core repulsion = 22316.937598 eV Total energy + Delta-G solvation = -4136.729894 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.054 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.60344 -39.83527 -39.75723 -37.02410 -36.55581 -36.34564 -35.29445 -33.82186 -31.60188 -30.15698 -29.80128 -29.54274 -25.52953 -24.34054 -22.29789 -21.93943 -21.32522 -20.57951 -19.65911 -19.23432 -17.94656 -17.71911 -17.29454 -16.68312 -16.26382 -16.01460 -15.67902 -15.57426 -14.54591 -14.40138 -14.22749 -14.13721 -13.66422 -13.58645 -13.08427 -12.72511 -12.49918 -12.26305 -12.18558 -12.12651 -11.88307 -11.54255 -11.48169 -11.41379 -11.31054 -11.11735 -11.08060 -10.82470 -10.67598 -10.21031 -9.73001 -9.61789 -9.43723 -8.72723 -7.95614 -7.68431 -7.18880 -4.74542 0.99251 1.00981 1.94666 2.37380 2.57504 2.76628 2.83302 2.86413 2.87008 2.93475 3.01322 3.42877 3.63133 4.19701 4.29170 4.63384 4.87426 4.98933 5.23233 5.34203 5.43291 5.70567 5.90401 6.00377 6.11315 6.18361 6.26407 6.45155 6.63099 6.66882 6.82372 6.88508 7.07385 7.20499 7.52600 7.58378 7.59674 7.66169 7.84914 8.20129 8.44923 8.53315 9.73434 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.011692 B = 0.004087 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.183526 B = 6849.980378 C = 8679.023062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.433 4.433 8 H 0.089 0.911 9 C 0.122 3.878 10 C -0.216 4.216 11 C -0.045 4.045 12 C -0.100 4.100 13 O -0.636 6.636 14 S 2.676 3.324 15 O -0.966 6.966 16 O -0.964 6.964 17 C -0.770 4.770 18 C 0.177 3.823 19 N -0.517 5.517 20 H 0.429 0.571 21 C -0.065 4.065 22 C 0.559 3.441 23 O -0.505 6.505 24 O -0.521 6.521 25 C 0.003 3.997 26 C -0.087 4.087 27 C -0.161 4.161 28 H 0.288 0.712 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.198 0.802 32 H 0.417 0.583 33 H 0.166 0.834 34 H 0.101 0.899 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.224 0.359 10.239 10.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.149 4.149 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.461 4.461 8 H 0.107 0.893 9 C 0.118 3.882 10 C -0.236 4.236 11 C -0.066 4.066 12 C -0.145 4.145 13 O -0.596 6.596 14 S 2.770 3.230 15 O -0.964 6.964 16 O -0.962 6.962 17 C -0.858 4.858 18 C 0.032 3.968 19 N -0.111 5.111 20 H 0.268 0.732 21 C -0.174 4.174 22 C 0.403 3.597 23 O -0.393 6.393 24 O -0.334 6.334 25 C -0.022 4.022 26 C -0.107 4.107 27 C -0.181 4.181 28 H 0.099 0.901 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.215 0.785 32 H 0.277 0.723 33 H 0.184 0.816 34 H 0.120 0.880 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.331 -0.261 9.773 9.866 hybrid contribution -0.545 1.569 1.244 2.076 sum -1.876 1.309 11.017 11.252 Atomic orbital electron populations 1.69831 1.07845 1.30291 1.31373 1.26098 0.94852 1.02043 0.91904 0.86179 0.80796 0.79729 0.79557 1.19118 1.19747 1.17968 1.19833 0.98565 0.91065 1.36642 0.89339 1.17803 0.90599 0.92306 0.87542 1.20624 1.03992 0.91948 1.07024 1.20373 0.92884 0.98317 0.94996 1.17565 1.01521 0.79852 1.15514 1.85655 1.70873 1.46224 1.56871 1.03160 0.73365 0.73593 0.72931 1.93546 1.31543 1.86010 1.85346 1.93518 1.77705 1.38949 1.86046 1.31617 1.08703 1.18290 1.27165 1.22030 0.96188 0.92135 0.86465 1.42150 1.16156 1.25479 1.27293 0.73221 1.19317 0.91622 1.01494 1.04949 1.19364 0.84254 0.77619 0.78436 1.90976 1.32924 1.44591 1.70824 1.84567 1.52298 1.51002 1.45542 1.21026 0.94970 0.95609 0.90624 1.20511 0.98562 0.91511 1.00163 1.20925 0.99299 0.96380 1.01514 0.90055 0.87433 0.87731 0.78496 0.72337 0.81626 0.88044 0.85544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.15 10.97 55.54 0.61 -16.54 16 2 C 0.07 1.55 5.13 -17.34 -0.09 1.46 16 3 Si 0.91 15.90 29.60 -169.99 -5.03 10.87 16 4 H -0.27 -4.64 7.11 56.52 0.40 -4.24 16 5 H -0.27 -4.66 7.11 56.52 0.40 -4.26 16 6 H -0.26 -4.42 7.11 56.52 0.40 -4.02 16 7 C -0.43 -9.79 9.04 -37.83 -0.34 -10.14 16 8 H 0.09 1.90 7.91 -52.49 -0.41 1.48 16 9 C 0.12 2.81 5.57 -106.80 -0.60 2.21 16 10 C -0.22 -4.73 9.74 -39.25 -0.38 -5.11 16 11 C -0.04 -0.97 9.12 -39.83 -0.36 -1.33 16 12 C -0.10 -2.12 4.82 -38.78 -0.19 -2.31 16 13 O -0.64 -12.84 10.14 -50.84 -0.52 -13.36 16 14 S 2.68 49.90 5.57 -107.50 -0.60 49.30 16 15 O -0.97 -19.38 16.16 -66.81 -1.08 -20.46 16 16 O -0.96 -19.78 17.86 -66.81 -1.19 -20.98 16 17 C -0.77 -12.22 5.42 -39.98 -0.22 -12.43 16 18 C 0.18 2.37 10.88 -17.16 -0.19 2.19 16 19 N -0.52 -5.82 6.07 -9.52 -0.06 -5.88 16 20 H 0.43 3.38 8.96 -40.82 -0.37 3.01 16 21 C -0.07 -0.87 7.10 -81.99 -0.58 -1.45 16 22 C 0.56 6.89 8.30 34.06 0.28 7.18 16 23 O -0.51 -7.60 17.67 -19.36 -0.34 -7.94 16 24 O -0.52 -4.40 13.44 -41.02 -0.55 -4.95 16 25 C 0.00 0.05 10.46 -39.09 -0.41 -0.36 16 26 C -0.09 -1.80 8.62 -39.83 -0.34 -2.14 16 27 C -0.16 -3.58 8.64 -39.25 -0.34 -3.92 16 28 H 0.29 5.78 8.30 -40.82 -0.34 5.44 16 29 H 0.11 2.16 8.06 -52.49 -0.42 1.73 16 30 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 31 H 0.20 2.33 8.06 -52.49 -0.42 1.91 16 32 H 0.42 1.61 9.11 45.56 0.42 2.02 16 33 H 0.17 2.41 8.06 -52.49 -0.42 1.98 16 34 H 0.10 1.91 7.96 -52.49 -0.42 1.49 16 35 H 0.13 2.84 6.18 -52.49 -0.32 2.51 16 LS Contribution 332.29 15.07 5.01 5.01 Total: -1.00 -30.97 332.29 -9.44 -40.40 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -1.93 Total: 10.69 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -3.75 Total: -26.16 kcal Atomic # 7 Polarization: -22.98 SS G_CDS: 0.55 Total: -22.42 kcal Atomic # 8 Polarization: -64.01 SS G_CDS: -3.68 Total: -67.69 kcal Atomic # 14 Polarization: 15.90 SS G_CDS: -5.03 Total: 10.87 kcal Atomic # 16 Polarization: 49.90 SS G_CDS: -0.60 Total: 49.30 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.97 -9.44 -40.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833069116.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.244 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds