Wall clock time and date at job start Tue Mar 31 2020 19:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86795 * 120.00081 * 2 1 4 4 H 1.48494 * 109.47336 * 274.65529 * 3 2 1 5 5 H 1.48499 * 109.47237 * 34.65824 * 3 2 1 6 6 H 1.48508 * 109.47003 * 154.65549 * 3 2 1 7 7 C 1.39893 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00062 * 162.15340 * 7 2 1 9 9 C 1.41218 * 120.00187 * 342.16798 * 7 2 1 10 10 C 1.40833 * 120.18279 * 155.13971 * 9 7 2 11 11 C 1.36435 * 119.81345 * 180.02562 * 10 9 7 12 12 C 1.39317 * 120.18361 * 0.02562 * 11 10 9 13 13 O 1.35670 * 119.81540 * 179.97438 * 12 11 10 14 14 S 1.52194 * 114.00237 * 89.99692 * 13 12 11 15 15 O 1.42096 * 106.40230 * 321.45788 * 14 13 12 16 16 O 1.42103 * 106.40506 * 188.53496 * 14 13 12 17 17 C 1.76206 * 107.21948 * 74.99922 * 14 13 12 18 18 C 1.35486 * 126.07629 * 269.69415 * 17 14 13 19 19 N 1.34959 * 108.98105 * 179.82792 * 18 17 14 20 20 H 0.97009 * 125.63166 * 180.19144 * 19 18 17 21 21 C 1.37691 * 108.73381 * 0.43071 * 19 18 17 22 22 C 1.46497 * 126.26707 * 179.73117 * 21 19 18 23 23 O 1.21620 * 119.99961 * 180.02562 * 22 21 19 24 24 O 1.34892 * 119.99565 * 0.02562 * 22 21 19 25 25 C 1.38001 * 107.47213 * 359.73994 * 21 19 18 26 26 C 1.39317 * 120.36412 * 0.24701 * 12 11 10 27 27 C 1.36438 * 120.18550 * 359.48622 * 26 12 11 28 28 H 0.96999 * 120.00171 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.09500 * 0.02562 * 10 9 7 30 30 H 1.07995 * 119.90847 * 179.97438 * 11 10 9 31 31 H 1.08001 * 125.50994 * 359.97432 * 18 17 14 32 32 H 0.96702 * 116.99509 * 180.02562 * 24 22 21 33 33 H 1.07996 * 126.51725 * 179.97438 * 25 21 19 34 34 H 1.08002 * 119.90380 * 179.72380 * 26 12 11 35 35 H 1.07997 * 120.09657 * 180.25719 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3919 2.1032 -1.3954 5 1 1.4930 2.6222 0.7962 6 1 3.5862 1.4136 0.5994 7 6 2.0083 -1.2115 0.0005 8 1 3.0493 -1.2342 -0.2861 9 6 1.3531 -2.4050 0.3756 10 6 1.8225 -3.6476 -0.0924 11 6 1.1834 -4.7959 0.2742 12 6 0.0691 -4.7415 1.1087 13 8 -0.5609 -5.8880 1.4682 14 16 -0.0207 -6.5174 2.7443 15 8 1.3891 -6.3429 2.7120 16 8 -0.6440 -7.7892 2.8595 17 6 -0.6111 -5.5500 4.0935 18 6 0.0150 -4.4819 4.6436 19 7 -0.7427 -3.9996 5.6509 20 1 -0.5236 -3.2357 6.2071 21 6 -1.8755 -4.7744 5.7622 22 6 -2.9565 -4.5943 6.7343 23 8 -3.9096 -5.3499 6.7309 24 8 -2.8949 -3.5904 7.6332 25 6 -1.8061 -5.7518 4.7904 26 6 -0.4050 -3.5160 1.5715 27 6 0.2258 -2.3588 1.2186 28 1 -0.4850 0.8400 -0.0004 29 1 2.6859 -3.6914 -0.7398 30 1 1.5418 -5.7495 -0.0841 31 1 0.9657 -4.0797 4.3257 32 1 -3.6315 -3.5118 8.2547 33 1 -2.5359 -6.5257 4.6040 34 1 -1.2721 -3.4822 2.2145 35 1 -0.1405 -1.4099 1.5816 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833069116.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:41 Heat of formation + Delta-G solvation = -158.067557 kcal Electronic energy + Delta-G solvation = -26454.596298 eV Core-core repulsion = 22316.937598 eV Total energy + Delta-G solvation = -4137.658700 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.054 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.66409 -41.41019 -40.75479 -38.67634 -38.13054 -37.22566 -36.87191 -35.45537 -32.72387 -31.71410 -31.21931 -30.98596 -27.19297 -25.35851 -23.67052 -23.53216 -22.86661 -21.64691 -21.03299 -20.41775 -19.37670 -18.87426 -18.81104 -18.24954 -17.65664 -17.13006 -16.97635 -16.71741 -16.01752 -15.94811 -15.69910 -15.29542 -14.82009 -14.65630 -14.49298 -14.12960 -13.94376 -13.82253 -13.78984 -13.74054 -13.14226 -13.09450 -12.99554 -12.78064 -12.75130 -12.56682 -12.33025 -12.27880 -12.03303 -11.76160 -11.32100 -11.06981 -10.77612 -9.84445 -9.62220 -9.38232 -8.78702 -6.44856 -0.49582 -0.02602 0.72747 0.77592 1.07302 1.44775 1.49810 1.59641 1.62885 1.77829 1.90518 2.16504 2.19364 2.57643 2.83467 3.33167 3.57709 3.92799 3.95030 4.02308 4.28287 4.34837 4.43086 4.49219 4.68436 4.97531 5.02692 5.10382 5.15342 5.23200 5.30269 5.42237 5.53735 5.84540 5.88933 5.97996 6.17906 6.19079 6.52333 6.77549 6.80537 6.84863 8.16654 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.011692 B = 0.004087 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.183526 B = 6849.980378 C = 8679.023062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.040 3.960 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.265 1.265 6 H -0.254 1.254 7 C -0.461 4.461 8 H 0.092 0.908 9 C 0.098 3.902 10 C -0.226 4.226 11 C -0.058 4.058 12 C -0.106 4.106 13 O -0.647 6.647 14 S 2.695 3.305 15 O -0.982 6.982 16 O -0.987 6.987 17 C -0.786 4.786 18 C 0.184 3.816 19 N -0.493 5.493 20 H 0.447 0.553 21 C -0.060 4.060 22 C 0.569 3.431 23 O -0.535 6.535 24 O -0.504 6.504 25 C -0.020 4.020 26 C -0.080 4.080 27 C -0.172 4.172 28 H 0.297 0.703 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.214 0.786 32 H 0.440 0.560 33 H 0.164 0.836 34 H 0.119 0.881 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.075 2.034 11.738 11.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.179 4.179 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.190 1.190 6 H -0.177 1.177 7 C -0.488 4.488 8 H 0.110 0.890 9 C 0.094 3.906 10 C -0.246 4.246 11 C -0.078 4.078 12 C -0.150 4.150 13 O -0.607 6.607 14 S 2.792 3.208 15 O -0.981 6.981 16 O -0.985 6.985 17 C -0.878 4.878 18 C 0.037 3.963 19 N -0.088 5.088 20 H 0.290 0.710 21 C -0.169 4.169 22 C 0.414 3.586 23 O -0.426 6.426 24 O -0.319 6.319 25 C -0.046 4.046 26 C -0.100 4.100 27 C -0.192 4.192 28 H 0.108 0.892 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.231 0.769 32 H 0.304 0.696 33 H 0.181 0.819 34 H 0.137 0.863 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.173 1.435 11.265 11.416 hybrid contribution -0.676 0.997 0.900 1.504 sum -1.850 2.432 12.165 12.542 Atomic orbital electron populations 1.69856 1.09144 1.31640 1.31720 1.26845 0.95430 1.04749 0.90855 0.85139 0.79441 0.75532 0.79468 1.18987 1.18967 1.17721 1.20095 0.98985 0.91884 1.37874 0.89018 1.18119 0.91297 0.93011 0.88160 1.20807 1.04587 0.91868 1.07380 1.20616 0.93180 0.98869 0.95179 1.17678 1.01409 0.80338 1.15562 1.85580 1.70987 1.46014 1.58126 1.02052 0.72718 0.73152 0.72927 1.93524 1.32427 1.86289 1.85819 1.93489 1.78058 1.40435 1.86484 1.31064 1.09957 1.19637 1.27118 1.22221 0.96527 0.91247 0.86338 1.42072 1.14924 1.25319 1.26515 0.70951 1.19395 0.92183 1.00869 1.04488 1.19128 0.83249 0.77746 0.78492 1.90977 1.33959 1.45925 1.71724 1.84513 1.53396 1.48948 1.45067 1.21116 0.95025 0.96707 0.91712 1.20601 0.98690 0.90853 0.99876 1.20909 0.99684 0.96582 1.02036 0.89216 0.86351 0.86472 0.76925 0.69640 0.81890 0.86284 0.85993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -35.36 10.97 21.82 0.24 -35.12 16 2 C 0.04 1.70 5.13 85.24 0.44 2.14 16 3 Si 0.98 31.65 29.60 68.60 2.03 33.68 16 4 H -0.27 -8.43 7.11 99.48 0.71 -7.72 16 5 H -0.27 -8.15 7.11 99.48 0.71 -7.44 16 6 H -0.25 -7.99 7.11 99.48 0.71 -7.28 16 7 C -0.46 -20.87 9.04 23.40 0.21 -20.66 16 8 H 0.09 3.94 7.91 -2.91 -0.02 3.92 16 9 C 0.10 4.55 5.57 -21.28 -0.12 4.44 16 10 C -0.23 -9.99 9.74 22.48 0.22 -9.77 16 11 C -0.06 -2.50 9.12 22.11 0.20 -2.30 16 12 C -0.11 -4.50 4.82 22.79 0.11 -4.39 16 13 O -0.65 -26.15 10.14 -59.15 -0.60 -26.75 16 14 S 2.69 100.32 5.57 -56.49 -0.31 100.01 16 15 O -0.98 -39.22 16.16 -118.78 -1.92 -41.14 16 16 O -0.99 -40.82 17.86 -118.78 -2.12 -42.94 16 17 C -0.79 -24.23 5.42 22.01 0.12 -24.11 16 18 C 0.18 4.59 10.88 83.58 0.91 5.50 16 19 N -0.49 -9.79 6.07 -184.05 -1.12 -10.90 16 20 H 0.45 5.49 8.96 -92.70 -0.83 4.66 16 21 C -0.06 -1.47 7.10 40.32 0.29 -1.19 16 22 C 0.57 12.71 8.30 69.97 0.58 13.29 16 23 O -0.54 -15.33 17.67 19.44 0.34 -14.99 16 24 O -0.50 -6.76 13.44 -58.07 -0.78 -7.55 16 25 C -0.02 -0.60 10.46 22.59 0.24 -0.36 16 26 C -0.08 -3.28 8.62 22.11 0.19 -3.08 16 27 C -0.17 -7.65 8.64 22.49 0.19 -7.46 16 28 H 0.30 11.71 8.30 -92.71 -0.77 10.94 16 29 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 30 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 31 H 0.21 4.60 8.06 -2.91 -0.02 4.58 16 32 H 0.44 1.79 9.11 -74.06 -0.67 1.11 16 33 H 0.16 4.77 8.06 -2.91 -0.02 4.75 16 34 H 0.12 4.36 7.96 -2.91 -0.02 4.34 16 35 H 0.12 5.47 6.18 -2.91 -0.02 5.46 16 Total: -1.00 -66.02 332.29 -0.97 -67.00 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: -0.31 Total: 26.66 kcal Atomic # 6 Polarization: -51.54 SS G_CDS: 3.58 Total: -47.97 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: -0.88 Total: -46.02 kcal Atomic # 8 Polarization: -128.28 SS G_CDS: -5.08 Total: -133.36 kcal Atomic # 14 Polarization: 31.65 SS G_CDS: 2.03 Total: 33.68 kcal Atomic # 16 Polarization: 100.32 SS G_CDS: -0.31 Total: 100.01 kcal Total: -66.02 -0.97 -67.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833069116.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.069 kcal (2) G-P(sol) polarization free energy of solvation -66.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds