Wall clock time and date at job start Tue Mar 31 2020 19:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 7 12 12 O 1.21553 * 119.99965 * 0.02562 * 11 10 9 13 13 C 1.47846 * 120.00003 * 180.02562 * 11 10 9 14 14 C 1.39601 * 120.14413 * 359.72515 * 13 11 10 15 15 C 1.37935 * 119.85388 * 179.74633 * 14 13 11 16 16 C 1.38388 * 120.14293 * 0.53136 * 15 14 13 17 17 C 1.38336 * 120.29208 * 359.74017 * 16 15 14 18 18 S 1.76206 * 119.92859 * 179.97438 * 17 16 15 19 19 O 1.42096 * 104.27279 * 26.05192 * 18 17 16 20 20 O 1.42093 * 104.27424 * 153.90859 * 18 17 16 21 21 C 1.81402 * 104.44723 * 269.98414 * 18 17 16 22 22 F 1.39895 * 109.47472 * 59.99772 * 21 18 17 23 23 F 1.39896 * 109.46526 * 180.02562 * 21 18 17 24 24 F 1.39900 * 109.46931 * 299.99505 * 21 18 17 25 25 C 1.37981 * 120.14765 * 359.97438 * 17 16 15 26 26 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 28 28 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 29 29 H 0.97000 * 120.00420 * 0.02562 * 10 9 7 30 30 H 1.08003 * 120.07015 * 0.02562 * 14 13 11 31 31 H 1.07999 * 119.93131 * 180.25358 * 15 14 13 32 32 H 1.07994 * 119.85229 * 179.76593 * 16 15 14 33 33 H 1.07994 * 120.07788 * 180.02562 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5585 -5.1054 0.0011 13 6 2.7143 -6.0072 0.0016 14 6 4.0874 -5.7556 -0.0042 15 6 4.9784 -6.8085 0.0017 16 6 4.5138 -8.1121 0.0022 17 6 3.1543 -8.3683 0.0023 18 16 2.5732 -10.0318 0.0022 19 8 3.6257 -10.7705 0.6069 20 8 1.2902 -9.9547 0.6079 21 6 2.4235 -10.4588 -1.7545 22 9 3.6738 -10.3423 -2.3710 23 9 1.9633 -11.7742 -1.8769 24 9 1.5170 -9.5890 -2.3701 25 6 2.2524 -7.3241 0.0023 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 0.8903 28 1 0.6246 -2.5571 -0.8897 29 1 3.1566 -3.4355 0.0009 30 1 4.4513 -4.7387 -0.0087 31 1 6.0410 -6.6153 0.0014 32 1 5.2155 -8.9329 0.0030 33 1 1.1914 -7.5254 0.0028 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834651794.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:52 Heat of formation + Delta-G solvation = -205.458440 kcal Electronic energy + Delta-G solvation = -26396.369112 eV Core-core repulsion = 21714.798648 eV Total energy + Delta-G solvation = -4681.570463 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.043 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -50.75435 -48.44554 -48.38332 -40.14721 -38.24210 -38.12904 -37.03682 -34.47157 -32.72712 -31.72006 -31.49894 -27.61922 -27.44911 -24.41002 -23.75857 -22.32309 -21.02881 -20.42439 -19.38833 -19.29884 -19.24731 -18.50554 -16.90048 -16.63526 -16.48411 -15.81745 -15.61073 -15.42377 -15.21628 -15.16142 -14.82271 -14.74641 -14.67808 -14.50550 -14.44352 -14.44054 -14.17179 -13.30384 -13.24022 -13.07790 -13.01240 -12.80656 -12.12472 -12.01258 -11.94323 -11.81153 -11.36191 -11.08842 -10.95367 -10.41495 -9.93205 -9.53756 -9.42991 -9.38981 -8.84616 -8.07207 -6.25178 -4.33379 -1.56409 0.21911 0.69528 1.56952 2.25480 2.63722 2.66692 2.83352 3.14030 3.19407 3.24502 3.25931 3.47957 3.74869 3.76341 4.26001 4.36021 4.45974 4.66329 4.85924 4.90875 5.11168 5.24573 5.44943 5.53645 5.82540 5.87209 6.28887 7.15683 7.19475 7.38708 7.52150 7.85545 8.39434 8.61661 8.85081 9.33195 10.84852 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.025440 B = 0.002604 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.356446 B =10750.931424 C =11103.554759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.701 5.701 11 C 0.537 3.463 12 O -0.542 6.542 13 C -0.135 4.135 14 C -0.019 4.019 15 C -0.141 4.141 16 C 0.001 3.999 17 C -0.667 4.667 18 S 2.492 3.508 19 O -0.860 6.860 20 O -0.852 6.852 21 C -0.020 4.020 22 F -0.158 7.158 23 F -0.161 7.161 24 F -0.152 7.152 25 C 0.042 3.958 26 H 0.268 0.732 27 H 0.032 0.968 28 H 0.031 0.969 29 H 0.390 0.610 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.604 -20.382 -1.639 23.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.587 4.587 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.349 5.349 11 C 0.321 3.679 12 O -0.421 6.421 13 C -0.140 4.140 14 C -0.038 4.038 15 C -0.160 4.160 16 C -0.018 4.018 17 C -0.760 4.760 18 S 2.655 3.345 19 O -0.858 6.858 20 O -0.849 6.849 21 C -0.146 4.146 22 F -0.139 7.139 23 F -0.143 7.143 24 F -0.134 7.134 25 C 0.021 3.979 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.224 0.776 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.168 0.832 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 10.328 -20.971 -1.148 23.405 hybrid contribution 1.053 1.466 -1.139 2.134 sum 11.381 -19.505 -2.286 22.698 Atomic orbital electron populations 1.69955 1.06131 1.27618 1.48320 1.24945 0.94930 0.99493 0.94520 0.86454 0.79425 0.82205 0.78708 1.20030 1.20999 1.20011 1.21141 0.93201 0.90333 1.53987 0.91903 1.19216 0.88192 0.81570 0.98188 1.46449 1.11376 1.05846 1.71236 1.18075 0.87875 0.83193 0.78750 1.90780 1.15812 1.84673 1.50838 1.20474 0.94265 0.94537 1.04686 1.21934 0.92270 1.00622 0.89020 1.21273 1.00780 0.91763 1.02168 1.21126 0.92601 0.98808 0.89285 1.29625 1.03012 1.19374 1.23979 1.07130 0.76659 0.76623 0.74052 1.93671 1.55730 1.71209 1.65162 1.93713 1.40495 1.85964 1.64768 1.35122 0.78551 0.80383 1.20536 1.93269 1.39000 1.95434 1.86224 1.93268 1.88576 1.35104 1.97334 1.93322 1.66382 1.67606 1.86063 1.21124 1.00417 0.90476 0.85835 0.92233 0.95044 0.95079 0.77605 0.83805 0.83670 0.83222 0.82163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.25 13.29 55.43 0.74 -24.52 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.09 29.54 -169.99 -5.02 15.07 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.55 -14.18 9.28 -34.44 -0.32 -14.50 16 8 H 0.06 1.49 7.60 -52.49 -0.40 1.09 16 9 C 0.25 6.27 5.43 -5.19 -0.03 6.24 16 10 N -0.70 -13.74 5.50 -62.43 -0.34 -14.09 16 11 C 0.54 10.21 7.77 -12.33 -0.10 10.12 16 12 O -0.54 -12.47 16.35 5.32 0.09 -12.39 16 13 C -0.14 -1.90 5.87 -104.96 -0.62 -2.52 16 14 C -0.02 -0.20 9.54 -39.18 -0.37 -0.57 16 15 C -0.14 -1.11 10.03 -39.64 -0.40 -1.51 16 16 C 0.00 0.01 9.47 -39.49 -0.37 -0.36 16 17 C -0.67 -6.77 5.64 -39.64 -0.22 -7.00 16 18 S 2.49 23.39 5.19 -107.50 -0.56 22.84 16 19 O -0.86 -8.46 17.11 -57.54 -0.98 -9.44 16 20 O -0.85 -9.96 17.12 -57.54 -0.98 -10.95 16 21 C -0.02 -0.20 3.55 101.05 0.36 0.16 16 22 F -0.16 -1.45 17.35 2.25 0.04 -1.41 16 23 F -0.16 -1.58 17.36 2.25 0.04 -1.54 16 24 F -0.15 -1.66 17.35 2.25 0.04 -1.62 16 25 C 0.04 0.54 9.02 -39.18 -0.35 0.19 16 26 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.39 6.24 6.36 -40.82 -0.26 5.99 16 30 H 0.14 1.21 6.41 -52.48 -0.34 0.88 16 31 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 32 H 0.15 0.80 7.56 -52.49 -0.40 0.41 16 33 H 0.16 2.13 7.16 -52.49 -0.38 1.75 16 LS Contribution 326.25 15.07 4.92 4.92 Total: -1.00 -33.42 326.25 -6.73 -40.15 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -2.17 Total: 1.09 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -2.52 Total: -8.10 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.39 Total: -38.60 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -1.88 Total: -32.78 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.12 Total: -4.58 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 23.39 SS G_CDS: -0.56 Total: 22.84 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.42 -6.73 -40.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834651794.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.309 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds