Wall clock time and date at job start Tue Mar 31 2020 19:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 7 12 12 O 1.21553 * 119.99965 * 0.02562 * 11 10 9 13 13 C 1.47846 * 120.00003 * 180.02562 * 11 10 9 14 14 C 1.39601 * 120.14413 * 359.72515 * 13 11 10 15 15 C 1.37935 * 119.85388 * 179.74633 * 14 13 11 16 16 C 1.38388 * 120.14293 * 0.53136 * 15 14 13 17 17 C 1.38336 * 120.29208 * 359.74017 * 16 15 14 18 18 S 1.76206 * 119.92859 * 179.97438 * 17 16 15 19 19 O 1.42096 * 104.27279 * 26.05192 * 18 17 16 20 20 O 1.42093 * 104.27424 * 153.90859 * 18 17 16 21 21 C 1.81402 * 104.44723 * 269.98414 * 18 17 16 22 22 F 1.39895 * 109.47472 * 59.99772 * 21 18 17 23 23 F 1.39896 * 109.46526 * 180.02562 * 21 18 17 24 24 F 1.39900 * 109.46931 * 299.99505 * 21 18 17 25 25 C 1.37981 * 120.14765 * 359.97438 * 17 16 15 26 26 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 28 28 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 29 29 H 0.97000 * 120.00420 * 0.02562 * 10 9 7 30 30 H 1.08003 * 120.07015 * 0.02562 * 14 13 11 31 31 H 1.07999 * 119.93131 * 180.25358 * 15 14 13 32 32 H 1.07994 * 119.85229 * 179.76593 * 16 15 14 33 33 H 1.07994 * 120.07788 * 180.02562 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5585 -5.1054 0.0011 13 6 2.7143 -6.0072 0.0016 14 6 4.0874 -5.7556 -0.0042 15 6 4.9784 -6.8085 0.0017 16 6 4.5138 -8.1121 0.0022 17 6 3.1543 -8.3683 0.0023 18 16 2.5732 -10.0318 0.0022 19 8 3.6257 -10.7705 0.6069 20 8 1.2902 -9.9547 0.6079 21 6 2.4235 -10.4588 -1.7545 22 9 3.6738 -10.3423 -2.3710 23 9 1.9633 -11.7742 -1.8769 24 9 1.5170 -9.5890 -2.3701 25 6 2.2524 -7.3241 0.0023 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 0.8903 28 1 0.6246 -2.5571 -0.8897 29 1 3.1566 -3.4355 0.0009 30 1 4.4513 -4.7387 -0.0087 31 1 6.0410 -6.6153 0.0014 32 1 5.2155 -8.9329 0.0030 33 1 1.1914 -7.5254 0.0028 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834651794.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:51 Heat of formation + Delta-G solvation = -231.102715 kcal Electronic energy + Delta-G solvation = -26397.481131 eV Core-core repulsion = 21714.798648 eV Total energy + Delta-G solvation = -4682.682482 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.043 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -51.55639 -49.24344 -49.19275 -41.31491 -39.47553 -39.00891 -37.87539 -36.29435 -34.53023 -32.80089 -32.39115 -29.34565 -28.39975 -25.76095 -24.75943 -23.79886 -22.04333 -21.54758 -20.45901 -20.14803 -20.09451 -19.50228 -18.42179 -17.59081 -17.40266 -17.19153 -16.98577 -16.33648 -16.30152 -16.18361 -16.01083 -15.97856 -15.72536 -15.54711 -15.25345 -15.24440 -15.08706 -14.77984 -14.38459 -14.10646 -13.93230 -13.87070 -13.78592 -13.58534 -12.96557 -12.95248 -12.67941 -12.64715 -12.24509 -12.15306 -11.53079 -11.05338 -10.81464 -10.76268 -10.30755 -9.89449 -8.29472 -6.46703 -2.36136 -0.60195 -0.21771 0.79028 1.44608 1.44795 1.48473 1.56620 1.71023 1.84846 1.92989 2.21641 2.34566 2.44540 2.55651 2.75616 3.06055 3.54634 3.61582 3.84431 3.91373 4.09600 4.33234 4.63543 4.75701 4.99992 5.06453 5.10262 5.20707 5.39785 5.53233 5.63818 5.81460 6.61812 6.75907 7.19336 7.34282 8.82535 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.025440 B = 0.002604 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.356446 B =10750.931424 C =11103.554759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.260 1.260 7 C -0.557 4.557 8 H 0.089 0.911 9 C 0.264 3.736 10 N -0.695 5.695 11 C 0.535 3.465 12 O -0.595 6.595 13 C -0.162 4.162 14 C -0.014 4.014 15 C -0.125 4.125 16 C 0.014 3.986 17 C -0.670 4.670 18 S 2.518 3.482 19 O -0.857 6.857 20 O -0.880 6.880 21 C -0.016 4.016 22 F -0.151 7.151 23 F -0.162 7.162 24 F -0.162 7.162 25 C 0.026 3.974 26 H 0.269 0.731 27 H -0.009 1.009 28 H -0.009 1.009 29 H 0.410 0.590 30 H 0.164 0.836 31 H 0.194 0.806 32 H 0.189 0.811 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.045 -20.864 -1.707 26.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.185 1.185 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.595 4.595 8 H 0.107 0.893 9 C 0.142 3.858 10 N -0.345 5.345 11 C 0.323 3.677 12 O -0.478 6.478 13 C -0.166 4.166 14 C -0.032 4.032 15 C -0.143 4.143 16 C -0.005 4.005 17 C -0.762 4.762 18 S 2.682 3.318 19 O -0.854 6.854 20 O -0.877 6.877 21 C -0.142 4.142 22 F -0.132 7.132 23 F -0.143 7.143 24 F -0.143 7.143 25 C 0.005 3.995 26 H 0.078 0.922 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.248 0.752 30 H 0.181 0.819 31 H 0.211 0.789 32 H 0.206 0.794 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 14.827 -21.483 -1.214 26.132 hybrid contribution -0.279 1.457 -1.133 1.866 sum 14.548 -20.027 -2.347 24.864 Atomic orbital electron populations 1.70132 1.08357 1.28702 1.49760 1.26070 0.95741 1.03954 0.93792 0.85199 0.77890 0.76490 0.79599 1.18507 1.21414 1.18487 1.21576 0.94462 0.90272 1.53197 0.89342 1.18639 0.88656 0.83990 0.94522 1.46085 1.11540 1.05049 1.71792 1.18872 0.88193 0.83994 0.76674 1.90738 1.18592 1.85504 1.52938 1.20006 0.94902 0.92609 1.09115 1.22192 0.90527 1.02696 0.87826 1.21791 1.02542 0.90441 0.99512 1.21771 0.91995 1.00516 0.86229 1.29657 1.03795 1.18585 1.24153 1.06364 0.75829 0.76093 0.73497 1.93663 1.55514 1.71104 1.65138 1.93686 1.41962 1.86266 1.65803 1.35067 0.78580 0.80176 1.20403 1.93281 1.38431 1.95383 1.86148 1.93271 1.88625 1.35092 1.97328 1.93311 1.66845 1.67982 1.86212 1.21006 1.00328 0.91040 0.87119 0.92228 0.99063 0.99072 0.75232 0.81893 0.78929 0.79382 0.84071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.18 13.29 21.45 0.28 -54.90 16 2 C 0.00 0.23 5.46 84.66 0.46 0.69 16 3 Si 0.99 40.79 29.54 68.60 2.03 42.81 16 4 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 5 H -0.29 -12.02 7.11 99.48 0.71 -11.32 16 6 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 7 C -0.56 -29.08 9.28 25.60 0.24 -28.84 16 8 H 0.09 4.05 7.60 -2.91 -0.02 4.03 16 9 C 0.26 14.10 5.43 85.63 0.46 14.57 16 10 N -0.69 -28.09 5.50 -469.70 -2.58 -30.67 16 11 C 0.53 21.42 7.77 86.79 0.67 22.09 16 12 O -0.59 -29.73 16.35 -3.88 -0.06 -29.80 16 13 C -0.16 -4.54 5.87 -20.09 -0.12 -4.65 16 14 C -0.01 -0.24 9.54 22.53 0.21 -0.03 16 15 C -0.12 -1.32 10.03 22.23 0.22 -1.10 16 16 C 0.01 0.17 9.47 22.33 0.21 0.38 16 17 C -0.67 -12.36 5.64 22.23 0.13 -12.23 16 18 S 2.52 43.99 5.19 -56.49 -0.29 43.69 16 19 O -0.86 -14.52 17.11 -127.65 -2.18 -16.71 16 20 O -0.88 -20.80 17.12 -127.65 -2.19 -22.99 16 21 C -0.02 -0.30 3.55 113.37 0.40 0.11 16 22 F -0.15 -2.41 17.35 44.97 0.78 -1.63 16 23 F -0.16 -2.99 17.36 44.97 0.78 -2.21 16 24 F -0.16 -3.52 17.35 44.97 0.78 -2.74 16 25 C 0.03 0.67 9.02 22.53 0.20 0.87 16 26 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 27 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 28 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 29 H 0.41 12.82 6.36 -92.71 -0.59 12.23 16 30 H 0.16 2.17 6.41 -2.91 -0.02 2.15 16 31 H 0.19 0.34 8.06 -2.91 -0.02 0.32 16 32 H 0.19 0.86 7.56 -2.91 -0.02 0.84 16 33 H 0.14 4.12 7.16 -2.91 -0.02 4.10 16 Total: -1.00 -77.75 326.25 1.06 -76.69 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 0.62 Total: 6.58 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 3.10 Total: -8.14 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -2.30 Total: -85.57 kcal Atomic # 8 Polarization: -65.06 SS G_CDS: -4.43 Total: -69.49 kcal Atomic # 9 Polarization: -8.92 SS G_CDS: 2.34 Total: -6.58 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Atomic # 16 Polarization: 43.99 SS G_CDS: -0.29 Total: 43.69 kcal Total: -77.75 1.06 -76.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834651794.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.408 kcal (2) G-P(sol) polarization free energy of solvation -77.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds