Wall clock time and date at job start Tue Mar 31 2020 19:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00277 * 2 1 4 4 H 1.48492 * 109.47237 * 240.00171 * 3 2 1 5 5 H 1.48497 * 109.46858 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47208 * 119.99854 * 3 2 1 7 7 C 1.37885 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99818 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00046 * 359.97438 * 7 2 1 10 10 S 1.81403 * 109.47135 * 180.02562 * 9 7 2 11 11 O 1.42095 * 110.54042 * 68.38162 * 10 9 7 12 12 O 1.42100 * 110.54057 * 291.62449 * 10 9 7 13 13 N 1.65600 * 104.44630 * 180.02562 * 10 9 7 14 14 C 1.34777 * 120.00358 * 65.00259 * 13 10 9 15 15 O 1.21550 * 119.99751 * 359.97438 * 14 13 10 16 16 C 1.47846 * 120.00228 * 179.97438 * 14 13 10 17 17 C 1.39598 * 120.14111 * 359.97438 * 16 14 13 18 18 C 1.37943 * 119.85055 * 179.97438 * 17 16 14 19 19 C 1.38378 * 120.14478 * 0.27879 * 18 17 16 20 20 C 1.38344 * 120.29019 * 359.44560 * 19 18 17 21 21 C 1.50707 * 119.92526 * 180.25585 * 20 19 18 22 22 F 1.39901 * 109.46873 * 270.29716 * 21 20 19 23 23 F 1.39901 * 109.46908 * 30.29426 * 21 20 19 24 24 F 1.39895 * 109.46943 * 150.29488 * 21 20 19 25 25 C 1.37971 * 120.14683 * 0.55114 * 20 19 18 26 26 H 0.96999 * 119.99516 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46943 * 60.00158 * 9 7 2 28 28 H 1.09000 * 109.47406 * 300.00648 * 9 7 2 29 29 H 0.97006 * 120.00121 * 244.99666 * 13 10 9 30 30 H 1.07999 * 120.07630 * 359.97438 * 17 16 14 31 31 H 1.08002 * 119.92440 * 179.97438 * 18 17 16 32 32 H 1.08003 * 119.85402 * 179.69875 * 19 18 17 33 33 H 1.07996 * 120.07847 * 179.75010 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 16 2.4298 -3.8780 -0.0005 11 8 3.1264 -3.9384 1.2365 12 8 3.1265 -3.9383 -1.2375 13 7 1.4793 -5.2341 -0.0013 14 6 0.6890 -5.5026 -1.0594 15 8 0.6735 -4.7491 -2.0131 16 6 -0.1592 -6.7136 -1.0603 17 6 -0.1433 -7.5812 0.0332 18 6 -0.9374 -8.7091 0.0263 19 6 -1.7442 -8.9843 -1.0638 20 6 -1.7688 -8.1256 -2.1481 21 6 -2.6549 -8.4303 -3.3285 22 9 -1.9501 -9.2104 -4.2515 23 9 -3.7860 -9.1297 -2.8943 24 9 -3.0510 -7.2337 -3.9354 25 6 -0.9794 -6.9940 -2.1540 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 1.4914 -5.8353 0.7599 30 1 0.4893 -7.3700 0.8826 31 1 -0.9257 -9.3815 0.8714 32 1 -2.3604 -9.8713 -1.0663 33 1 -0.9965 -6.3265 -3.0028 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835413592.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:07 Heat of formation + Delta-G solvation = -261.600309 kcal Electronic energy + Delta-G solvation = -26409.936550 eV Core-core repulsion = 21725.931593 eV Total energy + Delta-G solvation = -4684.004957 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.043 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.23314 -48.75104 -48.69562 -41.72662 -39.78465 -38.13874 -37.10687 -35.89093 -35.44263 -33.17506 -32.43310 -31.12369 -27.17060 -26.00846 -25.53038 -23.32654 -22.52905 -20.98011 -20.20303 -19.56036 -19.43276 -19.22200 -18.42306 -18.13413 -17.56112 -17.36850 -16.65042 -16.39184 -16.31821 -16.05288 -15.90878 -15.59321 -15.40172 -15.16979 -15.03210 -14.85065 -14.75947 -14.52213 -14.17213 -13.95439 -13.85231 -13.60314 -13.51084 -13.24771 -13.14904 -13.00132 -12.73180 -12.56455 -12.40960 -12.16114 -11.89024 -11.58807 -11.11987 -10.79841 -10.48792 -10.27284 -8.43924 -6.63609 -0.81880 -0.57913 -0.13579 1.23756 1.37115 1.41598 1.46565 1.49726 1.60322 2.28966 2.39378 2.59655 2.70386 2.84696 2.90375 3.07461 3.32316 3.33535 3.68302 3.77562 3.88293 3.92609 4.17674 4.34880 4.62640 4.68613 4.72351 4.90283 5.03455 5.08924 5.27232 5.50980 5.64147 5.68763 6.31782 6.46383 7.08492 8.68753 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.017904 B = 0.003023 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.503256 B = 9260.063082 C =10092.190764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.026 3.974 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.571 4.571 8 H 0.070 0.930 9 C -0.422 4.422 10 S 2.600 3.400 11 O -0.971 6.971 12 O -0.983 6.983 13 N -1.037 6.037 14 C 0.577 3.423 15 O -0.527 6.527 16 C -0.156 4.156 17 C -0.041 4.041 18 C -0.108 4.108 19 C -0.031 4.031 20 C -0.202 4.202 21 C 0.512 3.488 22 F -0.179 7.179 23 F -0.170 7.170 24 F -0.185 7.185 25 C -0.026 4.026 26 H 0.275 0.725 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.446 0.554 30 H 0.172 0.828 31 H 0.191 0.809 32 H 0.173 0.827 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.196 -22.706 1.992 23.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.178 4.178 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.610 4.610 8 H 0.088 0.912 9 C -0.557 4.557 10 S 2.700 3.300 11 O -0.962 6.962 12 O -0.973 6.973 13 N -0.802 5.802 14 C 0.366 3.634 15 O -0.402 6.402 16 C -0.161 4.161 17 C -0.060 4.060 18 C -0.126 4.126 19 C -0.048 4.048 20 C -0.203 4.203 21 C 0.458 3.542 22 F -0.160 7.160 23 F -0.152 7.152 24 F -0.166 7.166 25 C -0.045 4.045 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.287 0.713 30 H 0.189 0.811 31 H 0.209 0.791 32 H 0.190 0.810 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.432 -22.130 1.267 23.080 hybrid contribution -0.492 1.076 -0.303 1.221 sum -6.925 -21.054 0.965 22.185 Atomic orbital electron populations 1.70032 1.07659 1.29072 1.47626 1.25880 0.95989 1.03274 0.92644 0.85464 0.78685 0.77040 0.79939 1.18995 1.19363 1.18040 1.20708 0.93194 0.90349 1.56705 0.91221 1.27669 1.10739 1.10696 1.06563 1.05470 0.76044 0.75417 0.73038 1.93509 1.71135 1.86219 1.45337 1.93496 1.71579 1.85789 1.46450 1.54846 1.55273 1.42809 1.27305 1.18673 0.78110 0.86093 0.80518 1.90990 1.64976 1.49925 1.34306 1.19590 1.01552 0.96434 0.98529 1.22053 0.95983 0.92045 0.95880 1.21642 0.94456 0.97078 0.99392 1.21678 0.95431 0.97486 0.90255 1.19935 1.03207 1.00116 0.97041 1.18241 0.78978 0.74077 0.82902 1.93232 1.78597 1.75414 1.68758 1.93200 1.53173 1.79385 1.89398 1.93210 1.91511 1.46825 1.85098 1.21019 0.91137 0.94730 0.97608 0.91624 0.90406 0.89276 0.71308 0.81107 0.79135 0.80971 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.56 13.29 21.45 0.28 -52.28 16 2 C 0.03 1.44 5.46 84.66 0.46 1.90 16 3 Si 0.97 42.98 29.54 68.60 2.03 45.00 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 6 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 7 C -0.57 -32.39 9.13 25.60 0.23 -32.16 16 8 H 0.07 3.83 7.71 -2.91 -0.02 3.81 16 9 C -0.42 -21.32 5.64 71.23 0.40 -20.92 16 10 S 2.60 110.11 5.03 -56.49 -0.28 109.83 16 11 O -0.97 -41.85 18.08 -127.65 -2.31 -44.16 16 12 O -0.98 -48.82 17.03 -120.72 -2.06 -50.87 16 13 N -1.04 -30.87 5.55 -175.60 -0.98 -31.84 16 14 C 0.58 18.72 7.51 86.79 0.65 19.37 16 15 O -0.53 -22.53 14.45 12.52 0.18 -22.35 16 16 C -0.16 -3.57 5.87 -20.09 -0.12 -3.69 16 17 C -0.04 -0.52 9.54 22.53 0.21 -0.30 16 18 C -0.11 -0.79 10.03 22.23 0.22 -0.57 16 19 C -0.03 -0.32 9.39 22.33 0.21 -0.11 16 20 C -0.20 -3.59 5.45 -19.90 -0.11 -3.70 16 21 C 0.51 9.78 3.36 71.24 0.24 10.02 16 22 F -0.18 -3.59 17.30 44.97 0.78 -2.81 16 23 F -0.17 -2.86 16.46 44.97 0.74 -2.12 16 24 F -0.19 -4.33 16.46 44.97 0.74 -3.59 16 25 C -0.03 -0.60 8.94 22.52 0.20 -0.40 16 26 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 27 H 0.08 4.22 7.19 -2.39 -0.02 4.21 16 28 H 0.09 4.31 8.14 -2.39 -0.02 4.29 16 29 H 0.45 8.26 6.82 -96.74 -0.66 7.60 16 30 H 0.17 1.01 6.41 -2.91 -0.02 1.00 16 31 H 0.19 -0.22 8.06 -2.91 -0.02 -0.25 16 32 H 0.17 0.77 7.60 -2.91 -0.02 0.74 16 33 H 0.13 3.59 7.19 -2.91 -0.02 3.57 16 Total: -1.00 -80.61 322.26 2.28 -78.32 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 0.55 Total: 7.40 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: 2.61 Total: -30.55 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -0.69 Total: -84.12 kcal Atomic # 8 Polarization: -113.19 SS G_CDS: -4.18 Total: -117.38 kcal Atomic # 9 Polarization: -10.77 SS G_CDS: 2.26 Total: -8.51 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 110.11 SS G_CDS: -0.28 Total: 109.83 kcal Total: -80.61 2.28 -78.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835413592.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.276 kcal (2) G-P(sol) polarization free energy of solvation -80.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -263.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -261.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds