Wall clock time and date at job start Tue Mar 31 2020 19:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47341 * 94.08640 * 3 2 1 5 5 C 1.36929 * 120.00089 * 273.01660 * 4 3 2 6 6 H 1.08003 * 120.00469 * 190.78972 * 5 4 3 7 7 C 1.38816 * 120.00047 * 10.78894 * 5 4 3 8 8 N 1.31618 * 119.99823 * 12.00489 * 7 5 4 9 9 Si 1.86795 * 120.00170 * 192.00304 * 7 5 4 10 10 H 1.48499 * 109.47162 * 59.99954 * 9 7 5 11 11 H 1.48506 * 109.47140 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47172 * 299.99947 * 9 7 5 13 13 S 1.65602 * 120.00141 * 93.01239 * 4 3 2 14 14 O 1.42103 * 106.40146 * 344.01968 * 13 4 3 15 15 O 1.42098 * 106.40452 * 211.09567 * 13 4 3 16 16 C 1.76198 * 107.21682 * 97.55489 * 13 4 3 17 17 C 1.39876 * 126.03881 * 114.29048 * 16 13 4 18 18 N 1.30835 * 108.20266 * 179.97438 * 17 16 13 19 19 N 1.40080 * 108.20609 * 0.02562 * 18 17 16 20 20 C 1.46500 * 126.03928 * 179.97438 * 19 18 17 21 21 C 1.34949 * 107.92782 * 359.97438 * 19 18 17 22 22 C 1.50702 * 126.13026 * 180.02562 * 21 19 18 23 23 F 1.39899 * 109.47048 * 21.95194 * 22 21 19 24 24 F 1.39900 * 109.47122 * 141.94874 * 22 21 19 25 25 F 1.39895 * 109.47446 * 261.95503 * 22 21 19 26 26 H 4.40639 * 5.51432 * 180.02562 * 4 1 2 27 27 H 1.08993 * 109.47925 * 334.08293 * 3 2 1 28 28 H 1.09003 * 109.46836 * 214.08060 * 3 2 1 29 29 H 0.96998 * 120.00062 * 179.97438 * 8 7 5 30 30 H 1.08005 * 125.89531 * 0.02562 * 17 16 13 31 31 H 1.09003 * 109.47273 * 90.01810 * 20 19 18 32 32 H 1.08996 * 109.47612 * 210.02646 * 20 19 18 33 33 H 1.09004 * 109.46937 * 330.01971 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0993 -1.3777 5 6 3.3042 -1.0343 -2.1267 6 1 3.8239 -0.9841 -3.0722 7 6 2.8085 -2.2482 -1.6709 8 7 1.9786 -2.2784 -0.6498 9 14 3.3194 -3.8387 -2.5066 10 1 4.7932 -3.9955 -2.4138 11 1 2.6559 -4.9856 -1.8358 12 1 2.9147 -3.7996 -3.9348 13 16 3.4808 1.5818 -2.0293 14 8 2.8652 2.5449 -1.1850 15 8 3.2102 1.4818 -3.4207 16 6 5.2192 1.8252 -1.8767 17 6 6.1331 1.9165 -2.9317 18 7 7.3257 2.0970 -2.4249 19 7 7.2083 2.1257 -1.0293 20 6 8.3056 2.3069 -0.0756 21 6 5.9060 1.9570 -0.7184 22 6 5.3213 1.9219 0.6702 23 9 6.1886 2.5679 1.5578 24 9 4.0830 2.5729 0.6713 25 9 5.1497 0.5925 1.0705 26 1 -1.0500 0.0002 0.0000 27 1 3.0098 -0.9234 0.4491 28 1 3.0089 0.8520 0.5759 29 1 1.6319 -3.1265 -0.3315 30 1 5.8951 1.8503 -3.9832 31 1 8.4379 3.3695 0.1285 32 1 8.0706 1.7852 0.8521 33 1 9.2248 1.9009 -0.4980 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867227216.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:37 Heat of formation + Delta-G solvation = -42.880408 kcal Electronic energy + Delta-G solvation = -29312.713228 eV Core-core repulsion = 24670.485428 eV Total energy + Delta-G solvation = -4642.227799 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.049 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -50.31592 -47.88590 -47.61039 -41.42222 -36.29858 -36.11895 -34.84648 -33.62322 -31.68813 -31.56435 -30.94927 -27.30204 -26.45826 -25.98237 -23.73777 -21.92427 -21.29143 -19.00040 -18.68830 -18.43753 -18.35931 -17.79254 -16.90037 -16.46470 -16.10666 -15.75352 -15.32877 -14.68849 -14.63455 -14.47494 -14.40268 -14.13695 -14.10762 -13.89699 -13.76220 -13.40284 -13.11898 -13.00384 -12.78033 -12.45475 -12.30402 -11.45544 -11.41102 -11.20191 -11.07024 -10.95625 -10.92789 -10.52112 -10.45856 -10.18187 -9.83522 -9.67706 -9.22802 -9.00799 -8.68794 -8.10980 -6.17364 -3.85660 1.02288 1.32094 1.86671 2.31330 2.52942 3.22375 3.26636 3.28433 3.39962 3.80858 3.86673 4.18241 4.20816 4.24205 4.39661 4.55228 4.68673 4.84909 4.86454 5.06885 5.13508 5.17277 5.34860 5.74056 5.79617 6.21391 6.26425 6.42397 6.86424 7.15157 7.22032 7.37894 7.55267 8.35880 8.86722 9.11956 9.25220 10.76152 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.013286 B = 0.006525 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.023624 B = 4290.061660 C = 4701.965963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.085 4.085 3 C 0.241 3.759 4 N -0.832 5.832 5 C -0.308 4.308 6 H 0.107 0.893 7 C 0.041 3.959 8 N -0.864 5.864 9 Si 0.917 3.083 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.273 1.273 13 S 2.656 3.344 14 O -0.963 6.963 15 O -0.956 6.956 16 C -0.740 4.740 17 C 0.132 3.868 18 N -0.269 5.269 19 N -0.336 5.336 20 C 0.083 3.917 21 C 0.086 3.914 22 C 0.514 3.486 23 F -0.176 7.176 24 F -0.121 7.121 25 F -0.150 7.150 26 H 0.197 0.803 27 H 0.120 0.880 28 H 0.058 0.942 29 H 0.268 0.732 30 H 0.209 0.791 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.943 6.117 4.339 12.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.088 4.088 3 C 0.116 3.884 4 N -0.664 5.664 5 C -0.441 4.441 6 H 0.125 0.875 7 C -0.164 4.164 8 N -0.504 5.504 9 Si 0.744 3.256 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.198 1.198 13 S 2.741 3.259 14 O -0.952 6.952 15 O -0.946 6.946 16 C -0.831 4.831 17 C -0.055 4.055 18 N -0.090 5.090 19 N -0.116 5.116 20 C -0.058 4.058 21 C -0.048 4.048 22 C 0.457 3.543 23 F -0.157 7.157 24 F -0.102 7.102 25 F -0.132 7.132 26 H 0.214 0.786 27 H 0.137 0.863 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.225 0.775 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 10.818 6.846 3.953 13.399 hybrid contribution -0.048 -1.346 0.200 1.362 sum 10.770 5.500 4.153 12.787 Atomic orbital electron populations 1.24154 0.95287 1.08220 1.02287 1.22956 0.94110 0.93880 0.97872 1.18241 0.84841 1.02029 0.83283 1.53402 1.70433 1.21699 1.20863 1.19267 1.37019 0.85621 1.02191 0.87511 1.25099 0.95553 0.98748 0.97046 1.70035 1.28014 1.26161 1.26143 0.86157 0.78692 0.81271 0.79490 1.20104 1.20923 1.19779 1.03940 0.74360 0.73349 0.74237 1.93553 1.74168 1.59655 1.67873 1.93476 1.83356 1.86567 1.31205 1.32954 1.31567 1.22860 0.95670 1.23618 0.87705 0.94140 0.99997 1.77452 1.22469 1.23605 0.85457 1.48943 1.04570 1.51990 1.06073 1.22298 0.88562 1.04099 0.90795 1.20547 0.87124 1.03771 0.93381 1.17665 0.77828 0.75610 0.83165 1.93180 1.69722 1.81857 1.70934 1.93507 1.39974 1.80527 1.96187 1.93354 1.95136 1.33432 1.91234 0.78610 0.86251 0.92434 0.92037 0.77469 0.89411 0.88586 0.88122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 64. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.37 19.25 29.55 0.57 -5.80 16 2 C -0.09 -2.09 11.25 -37.12 -0.42 -2.51 16 3 C 0.24 5.62 3.95 -6.83 -0.03 5.59 16 4 N -0.83 -19.96 2.88 -62.77 -0.18 -20.14 16 5 C -0.31 -7.75 9.39 -15.06 -0.14 -7.90 16 6 H 0.11 2.60 7.60 -52.48 -0.40 2.20 16 7 C 0.04 1.03 5.20 -17.43 -0.09 0.94 16 8 N -0.86 -22.10 8.40 55.49 0.47 -21.64 16 9 Si 0.92 19.71 29.57 -169.99 -5.03 14.68 16 10 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 13 S 2.66 59.26 5.35 -107.50 -0.58 58.69 16 14 O -0.96 -22.25 13.74 -57.17 -0.79 -23.03 16 15 O -0.96 -23.01 16.94 -57.17 -0.97 -23.97 16 16 C -0.74 -14.00 6.12 -40.01 -0.24 -14.24 16 17 C 0.13 2.21 11.70 -17.36 -0.20 2.01 16 18 N -0.27 -4.32 12.58 30.63 0.39 -3.93 16 19 N -0.34 -5.01 4.01 -63.88 -0.26 -5.27 16 20 C 0.08 0.79 10.41 59.85 0.62 1.42 16 21 C 0.09 1.47 6.39 -82.26 -0.53 0.95 16 22 C 0.51 8.35 3.14 36.01 0.11 8.46 16 23 F -0.18 -2.29 14.69 2.25 0.03 -2.26 16 24 F -0.12 -2.22 11.49 2.25 0.03 -2.20 16 25 F -0.15 -2.52 15.01 2.25 0.03 -2.48 16 26 H 0.20 3.65 7.80 -54.09 -0.42 3.23 16 27 H 0.12 2.86 6.24 -51.93 -0.32 2.54 16 28 H 0.06 1.23 3.82 -51.93 -0.20 1.03 16 29 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 30 H 0.21 2.92 8.06 -52.48 -0.42 2.49 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.10 0.81 6.65 -51.93 -0.35 0.46 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 307.52 15.07 4.63 4.63 Total: -1.00 -31.08 307.52 -4.65 -35.73 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -2.09 Total: 2.26 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -0.34 Total: -11.08 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: 0.41 Total: -50.97 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -1.75 Total: -47.01 kcal Atomic # 9 Polarization: -7.03 SS G_CDS: 0.09 Total: -6.94 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Atomic # 16 Polarization: 59.26 SS G_CDS: -0.58 Total: 58.69 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.08 -4.65 -35.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867227216.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.149 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds