Wall clock time and date at job start Tue Mar 31 2020 19:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47341 * 94.08640 * 3 2 1 5 5 C 1.36929 * 120.00089 * 273.01660 * 4 3 2 6 6 H 1.08003 * 120.00469 * 190.78972 * 5 4 3 7 7 C 1.38816 * 120.00047 * 10.78894 * 5 4 3 8 8 N 1.31618 * 119.99823 * 12.00489 * 7 5 4 9 9 Si 1.86795 * 120.00170 * 192.00304 * 7 5 4 10 10 H 1.48499 * 109.47162 * 59.99954 * 9 7 5 11 11 H 1.48506 * 109.47140 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47172 * 299.99947 * 9 7 5 13 13 S 1.65602 * 120.00141 * 93.01239 * 4 3 2 14 14 O 1.42103 * 106.40146 * 344.01968 * 13 4 3 15 15 O 1.42098 * 106.40452 * 211.09567 * 13 4 3 16 16 C 1.76198 * 107.21682 * 97.55489 * 13 4 3 17 17 C 1.39876 * 126.03881 * 114.29048 * 16 13 4 18 18 N 1.30835 * 108.20266 * 179.97438 * 17 16 13 19 19 N 1.40080 * 108.20609 * 0.02562 * 18 17 16 20 20 C 1.46500 * 126.03928 * 179.97438 * 19 18 17 21 21 C 1.34949 * 107.92782 * 359.97438 * 19 18 17 22 22 C 1.50702 * 126.13026 * 180.02562 * 21 19 18 23 23 F 1.39899 * 109.47048 * 21.95194 * 22 21 19 24 24 F 1.39900 * 109.47122 * 141.94874 * 22 21 19 25 25 F 1.39895 * 109.47446 * 261.95503 * 22 21 19 26 26 H 4.40639 * 5.51432 * 180.02562 * 4 1 2 27 27 H 1.08993 * 109.47925 * 334.08293 * 3 2 1 28 28 H 1.09003 * 109.46836 * 214.08060 * 3 2 1 29 29 H 0.96998 * 120.00062 * 179.97438 * 8 7 5 30 30 H 1.08005 * 125.89531 * 0.02562 * 17 16 13 31 31 H 1.09003 * 109.47273 * 90.01810 * 20 19 18 32 32 H 1.08996 * 109.47612 * 210.02646 * 20 19 18 33 33 H 1.09004 * 109.46937 * 330.01971 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0993 -1.3777 5 6 3.3042 -1.0343 -2.1267 6 1 3.8239 -0.9841 -3.0722 7 6 2.8085 -2.2482 -1.6709 8 7 1.9786 -2.2784 -0.6498 9 14 3.3194 -3.8387 -2.5066 10 1 4.7932 -3.9955 -2.4138 11 1 2.6559 -4.9856 -1.8358 12 1 2.9147 -3.7996 -3.9348 13 16 3.4808 1.5818 -2.0293 14 8 2.8652 2.5449 -1.1850 15 8 3.2102 1.4818 -3.4207 16 6 5.2192 1.8252 -1.8767 17 6 6.1331 1.9165 -2.9317 18 7 7.3257 2.0970 -2.4249 19 7 7.2083 2.1257 -1.0293 20 6 8.3056 2.3069 -0.0756 21 6 5.9060 1.9570 -0.7184 22 6 5.3213 1.9219 0.6702 23 9 6.1886 2.5679 1.5578 24 9 4.0830 2.5729 0.6713 25 9 5.1497 0.5925 1.0705 26 1 -1.0500 0.0002 0.0000 27 1 3.0098 -0.9234 0.4491 28 1 3.0089 0.8520 0.5759 29 1 1.6319 -3.1265 -0.3315 30 1 5.8951 1.8503 -3.9832 31 1 8.4379 3.3695 0.1285 32 1 8.0706 1.7852 0.8521 33 1 9.2248 1.9009 -0.4980 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867227216.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:35 Heat of formation + Delta-G solvation = -64.366630 kcal Electronic energy + Delta-G solvation = -29313.644940 eV Core-core repulsion = 24670.485428 eV Total energy + Delta-G solvation = -4643.159512 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.049 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -51.60630 -49.11443 -48.97573 -42.74122 -38.14136 -37.91197 -36.72534 -34.77811 -33.48631 -32.96624 -32.69975 -28.44972 -28.24683 -27.22934 -25.56600 -23.33168 -22.56900 -20.54144 -20.11735 -19.88756 -19.76727 -19.49400 -18.57914 -18.18809 -17.62067 -16.96069 -16.74077 -16.34147 -16.13658 -15.86211 -15.79527 -15.43781 -15.42452 -15.29983 -15.15150 -15.10436 -14.76891 -14.18097 -13.92898 -13.77365 -13.72925 -13.20273 -13.06035 -12.93339 -12.78888 -12.76890 -12.67242 -12.30924 -12.05297 -11.95081 -11.43668 -11.11527 -10.87265 -10.54994 -10.48618 -9.92602 -7.96687 -5.76391 -0.50940 -0.24367 0.60330 0.93375 1.32492 1.51502 1.52949 1.59548 2.06532 2.12049 2.43131 2.56658 2.57607 2.73224 2.81281 2.95976 3.06808 3.23900 3.55149 3.84722 4.04872 4.14286 4.18026 4.23799 4.46565 4.48534 4.95610 5.06611 5.24384 5.38071 5.58314 5.76139 5.91248 6.52786 7.07338 7.31288 7.42252 8.96409 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.013286 B = 0.006525 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.023624 B = 4290.061660 C = 4701.965963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.132 4.132 3 C 0.251 3.749 4 N -0.858 5.858 5 C -0.335 4.335 6 H 0.104 0.896 7 C -0.001 4.001 8 N -0.895 5.895 9 Si 0.973 3.027 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.276 1.276 13 S 2.693 3.307 14 O -0.976 6.976 15 O -0.982 6.982 16 C -0.763 4.763 17 C 0.131 3.869 18 N -0.266 5.266 19 N -0.318 5.318 20 C 0.064 3.936 21 C 0.088 3.912 22 C 0.517 3.483 23 F -0.152 7.152 24 F -0.136 7.136 25 F -0.153 7.153 26 H 0.230 0.770 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.263 0.737 30 H 0.229 0.771 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.094 7.008 4.604 14.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.134 4.134 3 C 0.125 3.875 4 N -0.691 5.691 5 C -0.465 4.465 6 H 0.122 0.878 7 C -0.202 4.202 8 N -0.535 5.535 9 Si 0.798 3.202 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.201 1.201 13 S 2.782 3.218 14 O -0.966 6.966 15 O -0.972 6.972 16 C -0.861 4.861 17 C -0.055 4.055 18 N -0.087 5.087 19 N -0.096 5.096 20 C -0.074 4.074 21 C -0.049 4.049 22 C 0.460 3.540 23 F -0.133 7.133 24 F -0.117 7.117 25 F -0.135 7.135 26 H 0.247 0.753 27 H 0.127 0.873 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.245 0.755 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 12.939 7.673 4.214 15.622 hybrid contribution -0.526 -1.302 0.137 1.411 sum 12.413 6.372 4.351 14.615 Atomic orbital electron populations 1.25070 0.96419 1.06961 1.01056 1.23715 0.95424 0.95123 0.99169 1.18219 0.84409 1.01930 0.82893 1.53008 1.74824 1.20605 1.20638 1.19346 1.37433 0.85851 1.03838 0.87796 1.25734 0.95631 1.01034 0.97849 1.70170 1.29902 1.26007 1.27450 0.85310 0.78566 0.78161 0.78149 1.19263 1.21094 1.20149 1.01515 0.74441 0.72652 0.73197 1.93549 1.74853 1.60052 1.68136 1.93451 1.84191 1.86824 1.32775 1.31953 1.28890 1.27398 0.97855 1.23972 0.87306 0.93559 1.00657 1.77464 1.21743 1.23452 0.86024 1.49393 1.04727 1.49031 1.06472 1.22909 0.87735 1.06395 0.90395 1.20594 0.88159 1.03006 0.93178 1.17559 0.77578 0.75547 0.83332 1.93227 1.68718 1.81327 1.70031 1.93474 1.41166 1.80789 1.96276 1.93357 1.95144 1.33741 1.91215 0.75316 0.87312 0.91059 0.92696 0.75514 0.86718 0.87139 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.59 19.25 74.32 1.43 -11.16 16 2 C -0.13 -6.57 11.25 31.12 0.35 -6.22 16 3 C 0.25 11.94 3.95 84.57 0.33 12.27 16 4 N -0.86 -41.83 2.88 -352.52 -1.02 -42.85 16 5 C -0.34 -17.24 9.39 84.04 0.79 -16.45 16 6 H 0.10 5.18 7.60 -2.91 -0.02 5.16 16 7 C 0.00 -0.05 5.20 84.86 0.44 0.39 16 8 N -0.90 -47.13 8.40 21.65 0.18 -46.95 16 9 Si 0.97 41.19 29.57 68.60 2.03 43.22 16 10 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 11 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 13 S 2.69 120.24 5.35 -56.49 -0.30 119.94 16 14 O -0.98 -45.04 13.74 -128.00 -1.76 -46.80 16 15 O -0.98 -47.55 16.94 -128.00 -2.17 -49.71 16 16 C -0.76 -27.87 6.12 21.99 0.13 -27.74 16 17 C 0.13 4.13 11.70 85.24 1.00 5.12 16 18 N -0.27 -7.71 12.58 -57.02 -0.72 -8.43 16 19 N -0.32 -8.40 4.01 -356.02 -1.43 -9.83 16 20 C 0.06 0.94 10.41 127.77 1.33 2.27 16 21 C 0.09 2.83 6.39 41.41 0.26 3.09 16 22 C 0.52 15.86 3.14 71.24 0.22 16.08 16 23 F -0.15 -3.50 14.69 44.97 0.66 -2.84 16 24 F -0.14 -4.87 11.49 44.97 0.52 -4.35 16 25 F -0.15 -4.98 15.01 44.97 0.67 -4.31 16 26 H 0.23 8.28 7.80 -4.42 -0.03 8.24 16 27 H 0.11 5.41 6.24 -2.39 -0.01 5.39 16 28 H 0.07 3.09 3.82 -2.39 -0.01 3.08 16 29 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 30 H 0.23 5.97 8.06 -2.91 -0.02 5.95 16 31 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.11 1.38 6.65 -2.39 -0.02 1.36 16 33 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -67.48 307.52 4.16 -63.32 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 1.19 Total: 11.93 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 6.29 Total: -22.32 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -2.98 Total: -108.06 kcal Atomic # 8 Polarization: -92.59 SS G_CDS: -3.93 Total: -96.52 kcal Atomic # 9 Polarization: -13.36 SS G_CDS: 1.85 Total: -11.50 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 16 Polarization: 120.24 SS G_CDS: -0.30 Total: 119.94 kcal Total: -67.48 4.16 -63.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867227216.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.050 kcal (2) G-P(sol) polarization free energy of solvation -67.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds