Wall clock time and date at job start Tue Mar 31 2020 20:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47271 * 32.48879 * 3 2 1 5 5 C 1.46510 * 119.99726 * 274.48793 * 4 3 2 6 6 C 1.53045 * 113.15096 * 40.54793 * 5 4 3 7 7 S 1.81503 * 89.85994 * 211.86938 * 6 5 4 8 8 C 1.53043 * 113.14916 * 300.11733 * 5 4 3 9 9 S 1.65597 * 120.00681 * 94.48839 * 4 3 2 10 10 O 1.42109 * 106.39610 * 344.64963 * 9 4 3 11 11 O 1.42098 * 106.40576 * 211.73585 * 9 4 3 12 12 C 1.76191 * 107.21874 * 98.18727 * 9 4 3 13 13 C 1.37646 * 120.12464 * 113.27640 * 12 9 4 14 14 C 1.38617 * 120.24361 * 180.32061 * 13 12 9 15 15 C 1.38651 * 120.50443 * 359.66972 * 14 13 12 16 16 C 1.37602 * 120.24819 * 0.02562 * 15 14 13 17 17 C 1.40699 * 120.13202 * 292.96788 * 12 9 4 18 18 C 1.41397 * 120.24032 * 359.97438 * 17 12 9 19 19 H 1.07994 * 119.99988 * 327.41810 * 18 17 12 20 20 C 1.39949 * 119.99814 * 147.42590 * 18 17 12 21 21 N 1.30822 * 119.99866 * 339.08944 * 20 18 17 22 22 Si 1.86797 * 119.99861 * 159.08975 * 20 18 17 23 23 H 1.48500 * 109.47258 * 269.99863 * 22 20 18 24 24 H 1.48503 * 109.47044 * 30.00004 * 22 20 18 25 25 H 1.48494 * 109.47122 * 149.99982 * 22 20 18 26 26 H 4.40639 * 5.51386 * 180.02562 * 4 1 2 27 27 H 1.08991 * 109.46959 * 272.48343 * 3 2 1 28 28 H 1.09005 * 109.46622 * 152.48181 * 3 2 1 29 29 H 1.09000 * 112.49357 * 170.33378 * 5 4 3 30 30 H 1.08998 * 113.14621 * 327.11459 * 6 5 4 31 31 H 1.09001 * 113.14720 * 96.59520 * 6 5 4 32 32 H 1.09001 * 113.14809 * 263.40646 * 8 5 4 33 33 H 1.09001 * 113.15006 * 32.84824 * 8 5 4 34 34 H 1.07999 * 119.87879 * 0.02562 * 13 12 9 35 35 H 1.08003 * 119.74625 * 179.69428 * 14 13 12 36 36 H 1.08003 * 119.87946 * 180.02562 * 15 14 13 37 37 H 1.07999 * 120.12384 * 180.02562 * 16 15 14 38 38 H 0.96998 * 120.00270 * 354.02474 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1350 -1.1641 -0.7419 5 6 3.2861 -2.4539 -0.0636 6 6 2.1401 -2.7638 0.9023 7 16 3.2913 -3.6761 1.9685 8 6 4.2621 -2.4036 1.1142 9 16 3.5168 -1.0231 -2.3470 10 8 2.9385 0.1967 -2.7912 11 8 3.2278 -2.2815 -2.9404 12 6 5.2630 -0.8128 -2.4513 13 6 6.0434 -1.7902 -3.0261 14 6 7.4181 -1.6303 -3.1034 15 6 8.0222 -0.4839 -2.6102 16 6 7.2611 0.5089 -2.0371 17 6 5.8645 0.3575 -1.9531 18 6 5.0721 1.3713 -1.3669 19 1 4.0691 1.5481 -1.7260 20 6 5.5878 2.1458 -0.3216 21 7 6.5958 1.7029 0.3850 22 14 4.8368 3.8119 0.0649 23 1 5.5298 4.8622 -0.7237 24 1 3.3944 3.7986 -0.2881 25 1 4.9891 4.0994 1.5138 26 1 -1.0498 -0.0002 -0.0004 27 1 3.0094 -0.0437 1.0266 28 1 3.0089 0.9123 -0.4748 29 1 3.4936 -3.2683 -0.7577 30 1 1.7287 -1.8738 1.3786 31 1 1.3689 -3.3966 0.4632 32 1 5.2670 -2.7351 0.8524 33 1 4.2610 -1.4439 1.6310 34 1 5.5834 -2.6870 -3.4140 35 1 8.0232 -2.4045 -3.5516 36 1 9.0941 -0.3697 -2.6761 37 1 7.7337 1.4012 -1.6539 38 1 6.9300 0.8035 0.2424 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867721848.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:24 Heat of formation + Delta-G solvation = 25.346721 kcal Electronic energy + Delta-G solvation = -25896.242748 eV Core-core repulsion = 22345.123453 eV Total energy + Delta-G solvation = -3551.119294 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.059 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -38.22566 -37.94427 -36.62478 -35.10273 -34.23333 -33.68970 -31.57286 -30.33182 -29.60600 -26.72885 -26.19330 -25.41841 -22.02502 -21.46105 -21.15348 -19.07475 -18.50193 -17.80509 -17.50920 -16.39441 -16.27562 -15.58076 -15.19841 -14.89915 -14.43179 -14.28962 -14.13107 -13.81356 -13.43797 -13.18088 -13.04118 -12.79773 -12.64877 -12.27169 -12.00569 -11.81077 -11.55716 -11.39111 -11.34005 -11.24877 -11.11597 -10.98685 -10.66776 -10.56594 -10.29873 -10.24750 -10.02535 -9.75536 -9.50291 -9.34848 -8.96308 -8.35533 -7.92106 -7.76804 -7.54410 -5.00228 1.14411 1.81825 1.96752 2.08066 2.52376 2.90163 3.01711 3.05908 3.08072 3.20888 3.70618 3.76374 4.21576 4.37085 4.46958 4.69999 4.78902 4.89959 4.93556 5.20146 5.31803 5.41252 5.53216 5.70736 5.77055 5.80397 5.93881 6.06418 6.13392 6.17153 6.31570 6.47389 6.71726 6.83631 7.02988 7.17265 7.26976 7.46100 7.55306 7.69682 7.80277 7.85173 8.25485 8.45803 9.69259 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.009713 B = 0.006877 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.046382 B = 4070.367057 C = 4905.545824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.190 4.190 3 C 0.215 3.785 4 N -0.972 5.972 5 C 0.154 3.846 6 C -0.089 4.089 7 S -0.293 6.293 8 C -0.093 4.093 9 S 2.700 3.300 10 O -0.962 6.962 11 O -0.990 6.990 12 C -0.777 4.777 13 C 0.009 3.991 14 C -0.254 4.254 15 C -0.056 4.056 16 C -0.204 4.204 17 C 0.176 3.824 18 C -0.538 4.538 19 H 0.118 0.882 20 C 0.045 3.955 21 N -0.778 5.778 22 Si 1.054 2.946 23 H -0.269 1.269 24 H -0.265 1.265 25 H -0.272 1.272 26 H 0.215 0.785 27 H 0.098 0.902 28 H 0.137 0.863 29 H 0.140 0.860 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.047 -2.747 3.224 6.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.192 4.192 3 C 0.091 3.909 4 N -0.803 5.803 5 C 0.045 3.955 6 C -0.240 4.240 7 S -0.069 6.069 8 C -0.243 4.243 9 S 2.799 3.201 10 O -0.952 6.952 11 O -0.980 6.980 12 C -0.872 4.872 13 C -0.011 4.011 14 C -0.274 4.274 15 C -0.075 4.075 16 C -0.224 4.224 17 C 0.171 3.829 18 C -0.565 4.565 19 H 0.135 0.865 20 C -0.180 4.180 21 N -0.400 5.400 22 Si 0.876 3.124 23 H -0.195 1.195 24 H -0.190 1.190 25 H -0.196 1.196 26 H 0.232 0.768 27 H 0.116 0.884 28 H 0.154 0.846 29 H 0.157 0.843 30 H 0.131 0.869 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.129 0.871 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.370 -2.560 4.511 7.466 hybrid contribution 0.614 -0.478 -1.396 1.598 sum -4.756 -3.038 3.114 6.446 Atomic orbital electron populations 1.24830 0.95787 1.00599 1.01218 1.23891 0.95162 1.00088 1.00011 1.18577 0.82825 0.90059 0.99419 1.57728 1.78844 1.13860 1.29917 1.22360 0.92314 0.86917 0.93916 1.24918 1.00967 1.01706 0.96362 1.88831 1.11711 1.43534 1.62785 1.24986 1.03447 0.99283 0.96550 1.01269 0.74877 0.72629 0.71288 1.93498 1.77845 1.45492 1.78374 1.93452 1.85499 1.44362 1.74722 1.29795 1.22788 1.04846 1.29789 1.20342 0.93770 0.95062 0.91879 1.20508 0.94288 1.00168 1.12484 1.20885 0.97838 0.93724 0.95041 1.21375 0.94582 0.99547 1.06905 1.17024 0.91990 0.88279 0.85604 1.21502 1.04593 1.14166 1.16226 0.86455 1.27078 0.93850 1.04522 0.92546 1.70445 1.17209 1.19983 1.32335 0.83780 0.77380 0.73503 0.77761 1.19464 1.18960 1.19640 0.76809 0.88370 0.84622 0.84260 0.86916 0.88232 0.87795 0.86868 0.87153 0.88311 0.88473 0.87145 0.88416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.77 19.25 29.55 0.57 -2.20 16 2 C -0.19 -2.95 11.66 -37.12 -0.43 -3.38 16 3 C 0.22 3.53 4.70 -6.83 -0.03 3.49 16 4 N -0.97 -16.63 2.95 -121.55 -0.36 -16.99 16 5 C 0.15 2.31 3.92 -67.88 -0.27 2.04 16 6 C -0.09 -1.18 7.02 37.18 0.26 -0.92 16 7 S -0.29 -4.11 24.80 -107.50 -2.67 -6.77 16 8 C -0.09 -1.31 7.55 37.18 0.28 -1.03 16 9 S 2.70 55.64 5.09 -107.50 -0.55 55.09 16 10 O -0.96 -22.06 14.50 -57.17 -0.83 -22.89 16 11 O -0.99 -21.26 15.83 -57.17 -0.91 -22.16 16 12 C -0.78 -17.03 5.97 -38.87 -0.23 -17.26 16 13 C 0.01 0.20 9.54 -39.66 -0.38 -0.18 16 14 C -0.25 -5.09 10.05 -39.29 -0.39 -5.49 16 15 C -0.06 -1.14 10.02 -39.66 -0.40 -1.54 16 16 C -0.20 -4.58 7.91 -38.87 -0.31 -4.89 16 17 C 0.18 4.05 5.17 -106.83 -0.55 3.49 16 18 C -0.54 -12.08 6.34 -37.74 -0.24 -12.32 16 19 H 0.12 2.69 4.15 -52.49 -0.22 2.47 16 20 C 0.04 0.95 5.01 -17.34 -0.09 0.87 16 21 N -0.78 -17.34 12.50 55.55 0.69 -16.65 16 22 Si 1.05 18.97 29.98 -169.99 -5.10 13.87 16 23 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 24 H -0.27 -4.56 7.11 56.52 0.40 -4.16 16 25 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 26 H 0.22 2.02 7.80 -54.10 -0.42 1.60 16 27 H 0.10 1.39 6.46 -51.93 -0.34 1.06 16 28 H 0.14 2.48 4.37 -51.93 -0.23 2.25 16 29 H 0.14 2.09 7.26 -51.93 -0.38 1.71 16 30 H 0.11 1.44 5.79 -51.93 -0.30 1.14 16 31 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 33 H 0.11 1.58 6.72 -51.93 -0.35 1.23 16 34 H 0.11 2.13 7.32 -52.49 -0.38 1.75 16 35 H 0.10 1.72 8.06 -52.48 -0.42 1.30 16 36 H 0.10 1.72 8.06 -52.48 -0.42 1.30 16 37 H 0.11 2.51 6.86 -52.49 -0.36 2.15 16 38 H 0.30 6.86 6.64 -40.82 -0.27 6.59 16 LS Contribution 336.86 15.07 5.08 5.08 Total: -1.00 -26.74 336.86 -10.57 -37.31 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -3.73 Total: 13.44 kcal Atomic # 6 Polarization: -37.11 SS G_CDS: -2.21 Total: -39.32 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.34 Total: -33.64 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -1.73 Total: -45.05 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.10 Total: 13.87 kcal Atomic # 16 Polarization: 51.53 SS G_CDS: -3.21 Total: 48.32 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -26.74 -10.57 -37.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867721848.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.655 kcal (2) G-P(sol) polarization free energy of solvation -26.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds