Wall clock time and date at job start Tue Mar 31 2020 20:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47271 * 32.48879 * 3 2 1 5 5 C 1.46510 * 119.99726 * 274.48793 * 4 3 2 6 6 C 1.53045 * 113.15096 * 40.54793 * 5 4 3 7 7 S 1.81503 * 89.85994 * 211.86938 * 6 5 4 8 8 C 1.53043 * 113.14916 * 300.11733 * 5 4 3 9 9 S 1.65597 * 120.00681 * 94.48839 * 4 3 2 10 10 O 1.42109 * 106.39610 * 344.64963 * 9 4 3 11 11 O 1.42098 * 106.40576 * 211.73585 * 9 4 3 12 12 C 1.76191 * 107.21874 * 98.18727 * 9 4 3 13 13 C 1.37646 * 120.12464 * 113.27640 * 12 9 4 14 14 C 1.38617 * 120.24361 * 180.32061 * 13 12 9 15 15 C 1.38651 * 120.50443 * 359.66972 * 14 13 12 16 16 C 1.37602 * 120.24819 * 0.02562 * 15 14 13 17 17 C 1.40699 * 120.13202 * 292.96788 * 12 9 4 18 18 C 1.41397 * 120.24032 * 359.97438 * 17 12 9 19 19 H 1.07994 * 119.99988 * 327.41810 * 18 17 12 20 20 C 1.39949 * 119.99814 * 147.42590 * 18 17 12 21 21 N 1.30822 * 119.99866 * 339.08944 * 20 18 17 22 22 Si 1.86797 * 119.99861 * 159.08975 * 20 18 17 23 23 H 1.48500 * 109.47258 * 269.99863 * 22 20 18 24 24 H 1.48503 * 109.47044 * 30.00004 * 22 20 18 25 25 H 1.48494 * 109.47122 * 149.99982 * 22 20 18 26 26 H 4.40639 * 5.51386 * 180.02562 * 4 1 2 27 27 H 1.08991 * 109.46959 * 272.48343 * 3 2 1 28 28 H 1.09005 * 109.46622 * 152.48181 * 3 2 1 29 29 H 1.09000 * 112.49357 * 170.33378 * 5 4 3 30 30 H 1.08998 * 113.14621 * 327.11459 * 6 5 4 31 31 H 1.09001 * 113.14720 * 96.59520 * 6 5 4 32 32 H 1.09001 * 113.14809 * 263.40646 * 8 5 4 33 33 H 1.09001 * 113.15006 * 32.84824 * 8 5 4 34 34 H 1.07999 * 119.87879 * 0.02562 * 13 12 9 35 35 H 1.08003 * 119.74625 * 179.69428 * 14 13 12 36 36 H 1.08003 * 119.87946 * 180.02562 * 15 14 13 37 37 H 1.07999 * 120.12384 * 180.02562 * 16 15 14 38 38 H 0.96998 * 120.00270 * 354.02474 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1350 -1.1641 -0.7419 5 6 3.2861 -2.4539 -0.0636 6 6 2.1401 -2.7638 0.9023 7 16 3.2913 -3.6761 1.9685 8 6 4.2621 -2.4036 1.1142 9 16 3.5168 -1.0231 -2.3470 10 8 2.9385 0.1967 -2.7912 11 8 3.2278 -2.2815 -2.9404 12 6 5.2630 -0.8128 -2.4513 13 6 6.0434 -1.7902 -3.0261 14 6 7.4181 -1.6303 -3.1034 15 6 8.0222 -0.4839 -2.6102 16 6 7.2611 0.5089 -2.0371 17 6 5.8645 0.3575 -1.9531 18 6 5.0721 1.3713 -1.3669 19 1 4.0691 1.5481 -1.7260 20 6 5.5878 2.1458 -0.3216 21 7 6.5958 1.7029 0.3850 22 14 4.8368 3.8119 0.0649 23 1 5.5298 4.8622 -0.7237 24 1 3.3944 3.7986 -0.2881 25 1 4.9891 4.0994 1.5138 26 1 -1.0498 -0.0002 -0.0004 27 1 3.0094 -0.0437 1.0266 28 1 3.0089 0.9123 -0.4748 29 1 3.4936 -3.2683 -0.7577 30 1 1.7287 -1.8738 1.3786 31 1 1.3689 -3.3966 0.4632 32 1 5.2670 -2.7351 0.8524 33 1 4.2610 -1.4439 1.6310 34 1 5.5834 -2.6870 -3.4140 35 1 8.0232 -2.4045 -3.5516 36 1 9.0941 -0.3697 -2.6761 37 1 7.7337 1.4012 -1.6539 38 1 6.9300 0.8035 0.2424 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867721848.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:23 Heat of formation + Delta-G solvation = 11.407148 kcal Electronic energy + Delta-G solvation = -25896.847213 eV Core-core repulsion = 22345.123453 eV Total energy + Delta-G solvation = -3551.723760 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.059 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.67469 -39.38435 -38.29934 -36.80234 -35.86924 -34.87799 -32.78988 -31.97756 -31.26463 -28.01229 -27.31230 -27.04894 -23.64778 -23.04702 -22.50334 -20.45823 -20.10826 -19.14453 -18.90111 -17.89246 -17.62263 -16.93111 -16.70781 -16.38558 -15.82126 -15.65955 -15.50217 -15.35700 -15.03339 -14.61758 -14.31840 -14.24148 -13.97894 -13.71684 -13.37240 -13.21804 -13.09987 -13.08535 -12.94874 -12.77466 -12.75010 -12.27011 -12.11350 -11.95797 -11.61691 -11.48517 -11.40010 -11.11466 -10.97760 -10.93016 -10.33346 -10.00561 -9.60443 -9.23585 -8.88877 -6.70797 -0.41733 0.40694 0.69454 0.82153 0.86647 1.53904 1.61505 1.69720 1.80724 1.94575 2.27015 2.31978 2.59324 2.87099 3.25424 3.30448 3.49737 3.58349 3.71272 3.76001 3.97774 4.22224 4.30233 4.33844 4.44539 4.50276 4.61626 4.64791 4.78109 4.82827 5.05157 5.10078 5.12303 5.36702 5.44176 5.50437 5.62037 5.79481 5.86041 6.01191 6.18051 6.58067 6.71426 6.78190 7.98984 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.009713 B = 0.006877 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.046382 B = 4070.367057 C = 4905.545824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.239 4.239 3 C 0.215 3.785 4 N -0.965 5.965 5 C 0.146 3.854 6 C -0.078 4.078 7 S -0.293 6.293 8 C -0.091 4.091 9 S 2.714 3.286 10 O -0.990 6.990 11 O -1.002 7.002 12 C -0.791 4.791 13 C -0.005 4.005 14 C -0.253 4.253 15 C -0.055 4.055 16 C -0.227 4.227 17 C 0.156 3.844 18 C -0.550 4.550 19 H 0.109 0.891 20 C 0.025 3.975 21 N -0.792 5.792 22 Si 1.086 2.914 23 H -0.268 1.268 24 H -0.256 1.256 25 H -0.263 1.263 26 H 0.253 0.747 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.138 0.862 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.099 0.901 38 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.018 -3.254 3.784 7.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.241 4.241 3 C 0.091 3.909 4 N -0.799 5.799 5 C 0.037 3.963 6 C -0.228 4.228 7 S -0.068 6.068 8 C -0.241 4.241 9 S 2.813 3.187 10 O -0.980 6.980 11 O -0.992 6.992 12 C -0.885 4.885 13 C -0.024 4.024 14 C -0.273 4.273 15 C -0.073 4.073 16 C -0.247 4.247 17 C 0.151 3.849 18 C -0.577 4.577 19 H 0.127 0.873 20 C -0.196 4.196 21 N -0.413 5.413 22 Si 0.904 3.096 23 H -0.193 1.193 24 H -0.179 1.179 25 H -0.187 1.187 26 H 0.269 0.731 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.156 0.844 30 H 0.138 0.862 31 H 0.131 0.869 32 H 0.118 0.882 33 H 0.132 0.868 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.117 0.883 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.324 -3.082 5.061 8.666 hybrid contribution 0.897 -0.424 -1.605 1.886 sum -5.427 -3.506 3.456 7.327 Atomic orbital electron populations 1.25738 0.96576 0.97998 0.98720 1.23877 0.95416 1.02462 1.02325 1.18486 0.84029 0.88740 0.99646 1.57399 1.78673 1.15003 1.28815 1.22568 0.93770 0.85798 0.94126 1.24865 1.00444 1.02054 0.95405 1.88855 1.11893 1.43381 1.62701 1.24933 1.03225 0.99559 0.96359 1.00678 0.74228 0.71755 0.72029 1.93452 1.78202 1.46698 1.79667 1.93425 1.85495 1.44577 1.75745 1.30075 1.23727 1.04888 1.29798 1.20657 0.94489 0.95403 0.91881 1.20898 0.94299 1.00595 1.11511 1.21220 0.99263 0.93136 0.93704 1.21400 0.94752 1.00114 1.08424 1.17282 0.92569 0.88882 0.86168 1.21502 1.04361 1.14983 1.16869 0.87329 1.27963 0.93428 1.06297 0.91883 1.70520 1.18157 1.19563 1.33100 0.83392 0.77399 0.70719 0.78103 1.19263 1.17927 1.18683 0.73066 0.86831 0.86865 0.84416 0.86157 0.86860 0.88166 0.86780 0.85824 0.85247 0.85669 0.88266 0.89491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 19.25 74.32 1.43 -2.71 16 2 C -0.24 -7.10 11.66 31.13 0.36 -6.73 16 3 C 0.21 7.00 4.70 84.58 0.40 7.40 16 4 N -0.97 -32.91 2.95 -538.48 -1.59 -34.50 16 5 C 0.15 4.27 3.92 45.02 0.18 4.44 16 6 C -0.08 -1.92 7.02 72.00 0.51 -1.41 16 7 S -0.29 -7.78 24.80 -56.49 -1.40 -9.18 16 8 C -0.09 -2.52 7.55 72.00 0.54 -1.98 16 9 S 2.71 112.83 5.09 -56.49 -0.29 112.55 16 10 O -0.99 -46.31 14.50 -128.00 -1.86 -48.17 16 11 O -1.00 -42.88 15.83 -128.00 -2.03 -44.90 16 12 C -0.79 -35.01 5.97 22.73 0.14 -34.88 16 13 C 0.00 -0.19 9.54 22.22 0.21 0.03 16 14 C -0.25 -9.75 10.05 22.46 0.23 -9.53 16 15 C -0.05 -2.18 10.02 22.22 0.22 -1.96 16 16 C -0.23 -10.31 7.91 22.73 0.18 -10.13 16 17 C 0.16 7.30 5.17 -21.29 -0.11 7.19 16 18 C -0.55 -25.32 6.34 23.46 0.15 -25.17 16 19 H 0.11 5.15 4.15 -2.91 -0.01 5.14 16 20 C 0.03 1.09 5.01 85.26 0.43 1.52 16 21 N -0.79 -35.89 12.50 21.83 0.27 -35.61 16 22 Si 1.09 38.14 29.98 68.60 2.06 40.19 16 23 H -0.27 -9.27 7.11 99.48 0.71 -8.56 16 24 H -0.26 -8.48 7.11 99.48 0.71 -7.78 16 25 H -0.26 -8.78 7.11 99.48 0.71 -8.08 16 26 H 0.25 3.66 7.80 -4.43 -0.03 3.63 16 27 H 0.11 3.20 6.46 -2.39 -0.02 3.19 16 28 H 0.11 4.24 4.37 -2.38 -0.01 4.23 16 29 H 0.14 4.05 7.26 -2.39 -0.02 4.04 16 30 H 0.12 2.83 5.79 -2.39 -0.01 2.82 16 31 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.11 3.15 6.72 -2.39 -0.02 3.14 16 34 H 0.12 4.67 7.32 -2.91 -0.02 4.65 16 35 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 36 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 37 H 0.10 4.64 6.86 -2.91 -0.02 4.62 16 38 H 0.29 13.65 6.64 -92.71 -0.62 13.03 16 Total: -1.00 -57.19 336.86 1.29 -55.91 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: 1.26 Total: 37.63 kcal Atomic # 6 Polarization: -78.77 SS G_CDS: 4.86 Total: -73.91 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: -1.32 Total: -70.11 kcal Atomic # 8 Polarization: -89.19 SS G_CDS: -3.88 Total: -93.07 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.06 Total: 40.19 kcal Atomic # 16 Polarization: 105.05 SS G_CDS: -1.69 Total: 103.37 kcal Total: -57.19 1.29 -55.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867721848.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.314 kcal (2) G-P(sol) polarization free energy of solvation -57.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds