Wall clock time and date at job start Tue Mar 31 2020 20:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99692 * 2 1 4 4 O 1.20826 * 120.00059 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00036 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.46936 * 180.02562 * 5 3 2 7 7 N 1.46495 * 109.46670 * 179.97438 * 6 5 3 8 8 C 1.37095 * 120.00377 * 265.56338 * 7 6 5 9 9 H 1.07994 * 120.00730 * 145.67462 * 8 7 6 10 10 C 1.38957 * 119.99561 * 325.67816 * 8 7 6 11 11 N 1.31408 * 120.00046 * 338.40071 * 10 8 7 12 12 Si 1.86799 * 119.99821 * 158.40850 * 10 8 7 13 13 H 1.48497 * 109.47549 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47235 * 119.99785 * 12 10 8 15 15 H 1.48508 * 109.46539 * 239.99719 * 12 10 8 16 16 C 1.34776 * 120.00058 * 85.56521 * 7 6 5 17 17 O 1.21293 * 120.00243 * 359.97438 * 16 7 6 18 18 C 1.50707 * 120.00202 * 179.97438 * 16 7 6 19 19 C 1.52998 * 109.47094 * 179.97438 * 18 16 7 20 20 C 1.52999 * 109.47062 * 179.97438 * 19 18 16 21 21 H 1.08999 * 115.54988 * 330.67348 * 20 19 18 22 22 C 1.53005 * 117.49782 * 116.37821 * 20 19 18 23 23 C 1.52994 * 117.49958 * 185.00073 * 20 19 18 24 24 Cl 1.80293 * 117.50112 * 0.02562 * 23 20 19 25 25 Cl 1.80309 * 117.49981 * 145.02286 * 23 20 19 26 26 H 1.08999 * 109.47100 * 299.99287 * 1 2 3 27 27 H 1.08992 * 109.47442 * 60.00061 * 1 2 3 28 28 H 1.09001 * 109.46492 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46968 * 60.00283 * 5 3 2 30 30 H 1.09005 * 109.46805 * 299.99595 * 5 3 2 31 31 H 1.08998 * 109.47026 * 59.99730 * 6 5 3 32 32 H 1.08997 * 109.46866 * 299.99708 * 6 5 3 33 33 H 0.97003 * 120.00258 * 180.02562 * 11 10 8 34 34 H 1.08993 * 109.46867 * 60.00036 * 18 16 7 35 35 H 1.08999 * 109.46815 * 300.00338 * 18 16 7 36 36 H 1.09000 * 109.46805 * 60.00645 * 19 18 16 37 37 H 1.08999 * 109.47707 * 299.99965 * 19 18 16 38 38 H 1.08999 * 117.50026 * 214.98477 * 22 20 19 39 39 H 1.09000 * 117.49857 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0000 2.7423 0.0002 7 7 5.4630 2.8190 0.0002 8 6 6.1428 2.9459 1.1840 9 1 7.1076 2.4763 1.3058 10 6 5.5903 3.6790 2.2272 11 7 4.6670 4.5808 1.9798 12 14 6.1601 3.3826 3.9813 13 1 7.2000 2.3226 3.9916 14 1 6.7268 4.6379 4.5365 15 1 5.0060 2.9513 4.8104 16 6 6.1407 2.7647 -1.1635 17 8 5.5394 2.6519 -2.2108 18 6 7.6456 2.8442 -1.1635 19 6 8.1608 2.7595 -2.6017 20 6 9.6886 2.8408 -2.6017 21 1 10.1290 3.4118 -1.7844 22 6 10.4609 1.6211 -3.1086 23 6 10.3933 2.8913 -3.9588 24 17 9.3598 2.8512 -5.4355 25 17 11.8892 3.8903 -4.0835 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 3.9557 0.7811 -0.8908 30 1 3.9564 0.7807 0.8892 31 1 3.6106 3.2358 0.8906 32 1 3.6099 3.2369 -0.8893 33 1 4.2816 5.0928 2.7079 34 1 8.0531 2.0168 -0.5827 35 1 7.9595 3.7890 -0.7197 36 1 7.7533 3.5867 -3.1828 37 1 7.8469 1.8145 -3.0451 38 1 11.4097 1.3893 -2.6245 39 1 9.8806 0.7610 -3.4423 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871347562.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:43 Heat of formation + Delta-G solvation = -115.880542 kcal Electronic energy + Delta-G solvation = -24476.194862 eV Core-core repulsion = 20471.722067 eV Total energy + Delta-G solvation = -4004.472795 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 337.068 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.06065 -38.87728 -38.03107 -36.21073 -36.05112 -35.67145 -34.96321 -32.13213 -31.67412 -30.46511 -27.56193 -25.13774 -25.05390 -22.79287 -22.24683 -20.55161 -20.15500 -19.12236 -17.43906 -16.72350 -16.45766 -16.22641 -16.15126 -15.76771 -15.05406 -14.77998 -14.46401 -14.18726 -13.62105 -13.46506 -13.11641 -12.91843 -12.70392 -12.47489 -12.23320 -12.05670 -11.82627 -11.70944 -11.57584 -11.34122 -11.17070 -11.15509 -11.09599 -10.88768 -10.75844 -10.63545 -10.54994 -10.42966 -10.09977 -10.04817 -10.00387 -9.73567 -9.20904 -8.51799 -7.66682 -6.45575 -4.15601 1.14127 2.16697 2.66206 3.03188 3.05959 3.16965 3.17463 3.19597 3.82154 4.03254 4.10754 4.30760 4.68476 4.89338 5.09782 5.20704 5.23429 5.29984 5.31629 5.44570 5.62543 5.66858 5.75119 5.81554 5.89296 5.94104 6.20053 6.27450 6.39620 6.57128 6.69223 6.72554 6.88648 7.27716 7.42667 7.80122 8.17177 8.27087 8.98559 9.40891 9.84112 10.55501 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.011270 B = 0.003043 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.895762 B = 9199.703696 C =11112.470588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.124 4.124 6 C 0.125 3.875 7 N -0.439 5.439 8 C -0.347 4.347 9 H 0.094 0.906 10 C 0.044 3.956 11 N -0.851 5.851 12 Si 0.911 3.089 13 H -0.266 1.266 14 H -0.280 1.280 15 H -0.279 1.279 16 C 0.469 3.531 17 O -0.604 6.604 18 C -0.115 4.115 19 C -0.077 4.077 20 C -0.105 4.105 21 H 0.130 0.870 22 C -0.144 4.144 23 C -0.003 4.003 24 Cl -0.092 7.092 25 Cl -0.107 7.107 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.063 0.937 33 H 0.271 0.729 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.608 -7.293 -4.627 10.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.163 4.163 6 C 0.001 3.999 7 N -0.157 5.157 8 C -0.474 4.474 9 H 0.112 0.888 10 C -0.163 4.163 11 N -0.486 5.486 12 Si 0.737 3.263 13 H -0.190 1.190 14 H -0.206 1.206 15 H -0.205 1.205 16 C 0.258 3.742 17 O -0.490 6.490 18 C -0.155 4.155 19 C -0.115 4.115 20 C -0.124 4.124 21 H 0.148 0.852 22 C -0.182 4.182 23 C -0.055 4.055 24 Cl -0.065 7.065 25 Cl -0.080 7.080 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.136 0.864 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.135 0.865 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.986 -6.809 -5.148 10.425 hybrid contribution 0.120 0.091 0.874 0.887 sum 6.106 -6.718 -4.274 10.034 Atomic orbital electron populations 1.23165 0.77391 1.03014 1.02337 1.86540 1.22734 1.34446 1.84680 1.24094 0.92420 0.80882 0.71740 1.90652 1.67265 1.36227 1.45014 1.21905 0.85814 1.03474 1.05104 1.21200 0.82341 0.90821 1.05515 1.43440 1.04438 1.62587 1.05198 1.19472 1.05471 1.32622 0.89874 0.88818 1.25377 0.96865 0.93581 1.00500 1.69929 1.27202 1.18473 1.33037 0.86130 0.78904 0.78598 0.82626 1.19048 1.20636 1.20490 1.20449 0.89593 0.80520 0.83589 1.90549 1.70779 1.55948 1.31714 1.21311 0.94336 1.03965 0.95874 1.21063 0.88337 1.04097 0.97965 1.23475 0.97377 0.99130 0.92458 0.85225 1.24075 1.03560 0.92038 0.98500 1.26902 0.88826 1.02096 0.87650 1.98751 1.68121 1.98430 1.41193 1.98736 1.38100 1.72921 1.98227 0.92176 0.92176 0.88633 0.88416 0.87882 0.86410 0.91851 0.91818 0.90073 0.89240 0.90033 0.90678 0.86459 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -5.96 10.57 -39.26 -0.41 -6.38 16 3 C 0.47 8.93 7.96 36.01 0.29 9.21 16 4 O -0.50 -11.00 15.73 -18.75 -0.29 -11.30 16 5 C -0.12 -2.43 6.11 -27.88 -0.17 -2.60 16 6 C 0.13 2.94 4.21 -4.04 -0.02 2.93 16 7 N -0.44 -10.29 2.55 -114.81 -0.29 -10.58 16 8 C -0.35 -8.06 8.70 -14.93 -0.13 -8.19 16 9 H 0.09 2.03 6.98 -52.49 -0.37 1.66 16 10 C 0.04 1.04 4.94 -17.47 -0.09 0.96 16 11 N -0.85 -21.85 11.31 55.50 0.63 -21.23 16 12 Si 0.91 18.32 29.60 -169.99 -5.03 13.29 16 13 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 14 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 15 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 16 C 0.47 10.46 7.61 -10.98 -0.08 10.38 16 17 O -0.60 -14.85 15.64 5.55 0.09 -14.76 16 18 C -0.11 -1.99 4.32 -27.88 -0.12 -2.11 16 19 C -0.08 -1.15 3.87 -26.73 -0.10 -1.26 16 20 C -0.11 -1.23 5.58 -90.62 -0.51 -1.74 16 21 H 0.13 1.41 8.07 -51.93 -0.42 0.99 16 22 C -0.14 -1.39 9.86 -26.73 -0.26 -1.66 16 23 C 0.00 -0.04 3.62 -26.73 -0.10 -0.14 16 24 Cl -0.09 -1.19 28.23 -51.86 -1.46 -2.66 16 25 Cl -0.11 -1.22 29.29 -51.86 -1.52 -2.74 16 26 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 27 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 28 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.10 1.87 8.14 -51.93 -0.42 1.44 16 30 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 31 H 0.12 3.02 5.29 -51.93 -0.27 2.75 16 32 H 0.06 1.61 7.52 -51.93 -0.39 1.22 16 33 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 34 H 0.08 1.27 7.64 -51.93 -0.40 0.88 16 35 H 0.09 1.56 8.10 -51.93 -0.42 1.14 16 36 H 0.08 1.38 7.98 -51.93 -0.41 0.97 16 37 H 0.07 1.16 7.83 -51.93 -0.41 0.75 16 38 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.12 1.10 8.03 -51.93 -0.42 0.68 16 LS Contribution 366.15 15.07 5.52 5.52 Total: -1.00 -28.96 366.15 -8.19 -37.14 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.18 Total: 6.40 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -0.22 Total: 7.28 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.33 Total: -31.81 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.62 Total: -32.44 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Atomic # 17 Polarization: -2.41 SS G_CDS: -2.98 Total: -5.39 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.96 -8.19 -37.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871347562.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.736 kcal (2) G-P(sol) polarization free energy of solvation -28.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds