Wall clock time and date at job start Tue Mar 31 2020 20:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99692 * 2 1 4 4 O 1.20826 * 120.00059 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00036 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.46936 * 180.02562 * 5 3 2 7 7 N 1.46495 * 109.46670 * 179.97438 * 6 5 3 8 8 C 1.37095 * 120.00377 * 265.56338 * 7 6 5 9 9 H 1.07994 * 120.00730 * 145.67462 * 8 7 6 10 10 C 1.38957 * 119.99561 * 325.67816 * 8 7 6 11 11 N 1.31408 * 120.00046 * 338.40071 * 10 8 7 12 12 Si 1.86799 * 119.99821 * 158.40850 * 10 8 7 13 13 H 1.48497 * 109.47549 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47235 * 119.99785 * 12 10 8 15 15 H 1.48508 * 109.46539 * 239.99719 * 12 10 8 16 16 C 1.34776 * 120.00058 * 85.56521 * 7 6 5 17 17 O 1.21293 * 120.00243 * 359.97438 * 16 7 6 18 18 C 1.50707 * 120.00202 * 179.97438 * 16 7 6 19 19 C 1.52998 * 109.47094 * 179.97438 * 18 16 7 20 20 C 1.52999 * 109.47062 * 179.97438 * 19 18 16 21 21 H 1.08999 * 115.54988 * 330.67348 * 20 19 18 22 22 C 1.53005 * 117.49782 * 116.37821 * 20 19 18 23 23 C 1.52994 * 117.49958 * 185.00073 * 20 19 18 24 24 Cl 1.80293 * 117.50112 * 0.02562 * 23 20 19 25 25 Cl 1.80309 * 117.49981 * 145.02286 * 23 20 19 26 26 H 1.08999 * 109.47100 * 299.99287 * 1 2 3 27 27 H 1.08992 * 109.47442 * 60.00061 * 1 2 3 28 28 H 1.09001 * 109.46492 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46968 * 60.00283 * 5 3 2 30 30 H 1.09005 * 109.46805 * 299.99595 * 5 3 2 31 31 H 1.08998 * 109.47026 * 59.99730 * 6 5 3 32 32 H 1.08997 * 109.46866 * 299.99708 * 6 5 3 33 33 H 0.97003 * 120.00258 * 180.02562 * 11 10 8 34 34 H 1.08993 * 109.46867 * 60.00036 * 18 16 7 35 35 H 1.08999 * 109.46815 * 300.00338 * 18 16 7 36 36 H 1.09000 * 109.46805 * 60.00645 * 19 18 16 37 37 H 1.08999 * 109.47707 * 299.99965 * 19 18 16 38 38 H 1.08999 * 117.50026 * 214.98477 * 22 20 19 39 39 H 1.09000 * 117.49857 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0000 2.7423 0.0002 7 7 5.4630 2.8190 0.0002 8 6 6.1428 2.9459 1.1840 9 1 7.1076 2.4763 1.3058 10 6 5.5903 3.6790 2.2272 11 7 4.6670 4.5808 1.9798 12 14 6.1601 3.3826 3.9813 13 1 7.2000 2.3226 3.9916 14 1 6.7268 4.6379 4.5365 15 1 5.0060 2.9513 4.8104 16 6 6.1407 2.7647 -1.1635 17 8 5.5394 2.6519 -2.2108 18 6 7.6456 2.8442 -1.1635 19 6 8.1608 2.7595 -2.6017 20 6 9.6886 2.8408 -2.6017 21 1 10.1290 3.4118 -1.7844 22 6 10.4609 1.6211 -3.1086 23 6 10.3933 2.8913 -3.9588 24 17 9.3598 2.8512 -5.4355 25 17 11.8892 3.8903 -4.0835 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 3.9557 0.7811 -0.8908 30 1 3.9564 0.7807 0.8892 31 1 3.6106 3.2358 0.8906 32 1 3.6099 3.2369 -0.8893 33 1 4.2816 5.0928 2.7079 34 1 8.0531 2.0168 -0.5827 35 1 7.9595 3.7890 -0.7197 36 1 7.7533 3.5867 -3.1828 37 1 7.8469 1.8145 -3.0451 38 1 11.4097 1.3893 -2.6245 39 1 9.8806 0.7610 -3.4423 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871347562.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:43 Heat of formation + Delta-G solvation = -130.205757 kcal Electronic energy + Delta-G solvation = -24476.816050 eV Core-core repulsion = 20471.722067 eV Total energy + Delta-G solvation = -4005.093983 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 337.068 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.56784 -40.50259 -39.09092 -37.66935 -36.97986 -36.88395 -36.50877 -33.84398 -33.22367 -32.01337 -28.76563 -26.90463 -26.46475 -24.23681 -23.15656 -21.81869 -21.43905 -20.90478 -19.01510 -18.29626 -17.85500 -17.62945 -17.50702 -17.19022 -16.41567 -16.18257 -16.04745 -15.70443 -15.01857 -14.85797 -14.37427 -14.24139 -14.03821 -13.82190 -13.61790 -13.34963 -13.13979 -12.94172 -12.84685 -12.83133 -12.68381 -12.56568 -12.23502 -12.10552 -12.02114 -11.99024 -11.90570 -11.82176 -11.77416 -11.60823 -11.11492 -11.00629 -10.68493 -10.29789 -9.52247 -8.26248 -6.01682 0.24285 1.12525 1.25013 1.45643 1.54268 1.65594 1.67393 2.08376 2.29010 2.37824 2.97865 3.11764 3.26232 3.46947 3.83947 4.02373 4.15035 4.18154 4.27957 4.30785 4.31017 4.43067 4.60275 4.61022 4.63966 4.69669 4.74301 4.88039 5.01719 5.07368 5.24431 5.27178 5.41353 5.43353 5.58070 6.00805 6.43883 6.69449 7.16830 7.61906 8.05249 8.76238 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.011270 B = 0.003043 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.895762 B = 9199.703696 C =11112.470588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.472 3.528 4 O -0.539 6.539 5 C -0.113 4.113 6 C 0.130 3.870 7 N -0.451 5.451 8 C -0.350 4.350 9 H 0.115 0.885 10 C -0.001 4.001 11 N -0.895 5.895 12 Si 0.980 3.020 13 H -0.245 1.245 14 H -0.285 1.285 15 H -0.286 1.286 16 C 0.456 3.544 17 O -0.634 6.634 18 C -0.104 4.104 19 C -0.065 4.065 20 C -0.111 4.111 21 H 0.143 0.857 22 C -0.118 4.118 23 C -0.012 4.012 24 Cl -0.111 7.111 25 Cl -0.104 7.104 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.139 0.861 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.028 0.972 33 H 0.269 0.731 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.145 0.855 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.447 -9.437 -3.558 13.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.316 3.684 4 O -0.428 6.428 5 C -0.152 4.152 6 C 0.006 3.994 7 N -0.169 5.169 8 C -0.477 4.477 9 H 0.133 0.867 10 C -0.204 4.204 11 N -0.532 5.532 12 Si 0.803 3.197 13 H -0.168 1.168 14 H -0.211 1.211 15 H -0.212 1.212 16 C 0.247 3.753 17 O -0.522 6.522 18 C -0.144 4.144 19 C -0.103 4.103 20 C -0.130 4.130 21 H 0.161 0.839 22 C -0.156 4.156 23 C -0.064 4.064 24 Cl -0.084 7.084 25 Cl -0.077 7.077 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.157 0.843 29 H 0.121 0.879 30 H 0.138 0.862 31 H 0.114 0.886 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.124 0.876 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.162 0.838 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.844 -8.989 -4.084 12.610 hybrid contribution -0.533 0.756 0.478 1.042 sum 7.311 -8.232 -3.606 11.585 Atomic orbital electron populations 1.23580 0.74827 1.05890 1.02394 1.86508 1.25118 1.32342 1.83860 1.23909 0.92237 0.81262 0.71003 1.90643 1.67893 1.37551 1.46759 1.21670 0.86630 1.00790 1.06073 1.20932 0.82967 0.92954 1.02593 1.43701 1.04349 1.62867 1.05972 1.19927 1.06071 1.32130 0.89573 0.86711 1.26245 0.96866 0.93068 1.04230 1.70068 1.29118 1.20005 1.34017 0.85081 0.78506 0.78609 0.77459 1.16807 1.21095 1.21226 1.21368 0.91761 0.79431 0.82756 1.90523 1.71982 1.57039 1.32660 1.21289 0.90467 1.04833 0.97796 1.20850 0.90795 1.02736 0.95917 1.23328 0.95103 1.01436 0.93109 0.83915 1.24245 1.04111 0.91040 0.96164 1.27039 0.88784 1.03767 0.86778 1.98751 1.68822 1.98494 1.42349 1.98737 1.37688 1.73127 1.98186 0.92142 0.92232 0.84318 0.87866 0.86235 0.88645 0.95314 0.92121 0.87589 0.89213 0.92656 0.91229 0.83754 0.85425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.79 16 2 O -0.36 -11.31 10.57 -51.41 -0.54 -11.85 16 3 C 0.47 18.19 7.96 71.24 0.57 18.76 16 4 O -0.54 -24.19 15.73 21.96 0.35 -23.85 16 5 C -0.11 -4.46 6.11 29.85 0.18 -4.27 16 6 C 0.13 6.34 4.21 86.38 0.36 6.71 16 7 N -0.45 -21.37 2.55 -635.54 -1.62 -22.99 16 8 C -0.35 -15.97 8.70 84.04 0.73 -15.24 16 9 H 0.12 4.66 6.98 -2.91 -0.02 4.64 16 10 C 0.00 -0.06 4.94 84.93 0.42 0.36 16 11 N -0.89 -47.15 11.31 21.67 0.24 -46.90 16 12 Si 0.98 36.84 29.60 68.60 2.03 38.87 16 13 H -0.25 -8.31 7.11 99.48 0.71 -7.61 16 14 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 15 H -0.29 -11.01 7.11 99.48 0.71 -10.30 16 16 C 0.46 20.50 7.61 87.66 0.67 21.17 16 17 O -0.63 -32.04 15.64 -3.07 -0.05 -32.09 16 18 C -0.10 -3.49 4.32 29.85 0.13 -3.36 16 19 C -0.06 -1.90 3.87 30.59 0.12 -1.78 16 20 C -0.11 -2.35 5.58 -10.79 -0.06 -2.41 16 21 H 0.14 2.68 8.07 -2.39 -0.02 2.66 16 22 C -0.12 -1.90 9.86 30.60 0.30 -1.60 16 23 C -0.01 -0.27 3.62 30.59 0.11 -0.16 16 24 Cl -0.11 -2.81 28.23 -2.72 -0.08 -2.89 16 25 Cl -0.10 -2.19 29.29 -2.72 -0.08 -2.27 16 26 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 27 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 28 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.10 3.95 8.14 -2.39 -0.02 3.93 16 30 H 0.12 4.29 8.14 -2.38 -0.02 4.27 16 31 H 0.10 5.12 5.29 -2.39 -0.01 5.11 16 32 H 0.03 1.55 7.52 -2.39 -0.02 1.53 16 33 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 34 H 0.11 3.02 7.64 -2.39 -0.02 3.00 16 35 H 0.09 3.02 8.10 -2.39 -0.02 3.00 16 36 H 0.05 1.90 7.98 -2.39 -0.02 1.88 16 37 H 0.07 2.09 7.83 -2.39 -0.02 2.07 16 38 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.13 1.93 8.03 -2.39 -0.02 1.91 16 Total: -1.00 -65.01 366.15 6.05 -58.96 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 1.07 Total: 25.04 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 4.73 Total: 19.97 kcal Atomic # 7 Polarization: -68.52 SS G_CDS: -1.38 Total: -69.89 kcal Atomic # 8 Polarization: -67.54 SS G_CDS: -0.25 Total: -67.79 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.03 Total: 38.87 kcal Atomic # 17 Polarization: -5.00 SS G_CDS: -0.16 Total: -5.16 kcal Total: -65.01 6.05 -58.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871347562.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.247 kcal (2) G-P(sol) polarization free energy of solvation -65.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds