Wall clock time and date at job start Tue Mar 31 2020 19:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34820 * 117.00669 * 2 1 4 4 O 1.21549 * 119.99683 * 0.02562 * 3 2 1 5 5 C 1.47012 * 120.00331 * 180.02562 * 3 2 1 6 6 C 1.36690 * 125.16174 * 180.02562 * 5 3 2 7 7 C 1.36775 * 114.72917 * 179.97438 * 6 5 3 8 8 C 1.36624 * 114.75499 * 359.97438 * 7 6 5 9 9 C 1.47199 * 125.15982 * 179.97438 * 8 7 6 10 10 O 1.21624 * 119.99960 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00426 * 179.97438 * 9 8 7 12 12 C 1.46495 * 120.00291 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.47169 * 325.00208 * 12 11 9 14 14 C 1.50708 * 109.47406 * 205.00074 * 12 11 9 15 15 H 1.08002 * 119.99334 * 0.02562 * 14 12 11 16 16 C 1.37871 * 120.00004 * 179.97438 * 14 12 11 17 17 N 1.31510 * 120.00580 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 119.99849 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47019 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47230 * 120.00145 * 18 16 14 21 21 H 1.48499 * 109.47200 * 240.00122 * 18 16 14 22 22 C 1.52999 * 109.47380 * 85.00364 * 12 11 9 23 23 F 1.39893 * 109.47205 * 60.00053 * 22 12 11 24 24 F 1.39899 * 109.47181 * 180.02562 * 22 12 11 25 25 F 1.39900 * 109.46791 * 300.00035 * 22 12 11 26 26 S 1.75833 * 125.16518 * 359.95362 * 5 3 2 27 27 H 1.08999 * 109.47092 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46537 * 299.99911 * 1 2 3 29 29 H 1.09000 * 109.46788 * 59.99429 * 1 2 3 30 30 H 1.07995 * 122.63806 * 0.22052 * 6 5 3 31 31 H 1.07997 * 122.61791 * 179.97438 * 7 6 5 32 32 H 0.97005 * 120.00267 * 0.02562 * 11 9 8 33 33 H 0.97002 * 120.00727 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2012 0.0000 4 8 1.4023 2.2206 0.0005 5 6 3.5323 1.2780 -0.0006 6 6 4.2600 2.4351 -0.0001 7 6 5.6162 2.2581 -0.0003 8 6 6.0230 0.9538 -0.0003 9 6 7.4242 0.5029 -0.0009 10 8 8.3257 1.3192 -0.0011 11 7 7.7081 -0.8146 -0.0003 12 6 9.1026 -1.2634 -0.0004 13 1 9.7063 -0.5736 -0.5903 14 6 9.1863 -2.6434 -0.6003 15 1 8.2902 -3.1366 -0.9471 16 6 10.4067 -3.2758 -0.7072 17 7 11.4979 -2.6751 -0.2853 18 14 10.5104 -4.9861 -1.4513 19 1 9.1518 -5.4375 -1.8457 20 1 11.3875 -4.9524 -2.6492 21 1 11.0745 -5.9277 -0.4512 22 6 9.6270 -1.2993 1.4365 23 9 8.8523 -2.1846 2.1935 24 9 10.9589 -1.7274 1.4363 25 9 9.5494 -0.0183 1.9933 26 16 4.6188 -0.1045 -0.0001 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 3.8002 3.4123 0.0042 31 1 6.3112 3.0848 -0.0004 32 1 6.9891 -1.4658 0.0002 33 1 12.3565 -3.1202 -0.3601 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928811317.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:34 Heat of formation + Delta-G solvation = -218.329930 kcal Electronic energy + Delta-G solvation = -26690.744430 eV Core-core repulsion = 22008.615817 eV Total energy + Delta-G solvation = -4682.128613 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.043 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.44075 -46.09527 -45.69929 -40.60463 -39.36090 -37.54657 -36.49725 -34.83759 -32.74566 -30.78506 -28.88585 -27.82628 -25.60340 -24.64461 -22.47011 -21.97941 -20.60495 -19.31392 -19.13924 -17.73460 -17.08022 -16.90843 -16.74094 -16.68396 -16.36330 -16.14231 -15.57747 -15.04987 -14.66119 -14.47197 -14.04162 -13.73878 -13.50718 -13.14420 -13.01370 -12.70485 -12.64702 -12.53816 -12.48206 -12.37575 -12.32781 -12.08683 -11.90859 -11.29533 -11.23020 -11.15109 -10.94600 -10.92805 -10.90627 -10.49471 -9.76758 -9.69598 -9.10901 -8.83912 -8.81773 -8.47210 -6.32262 -4.57222 -0.13779 1.12478 1.56197 1.79697 2.30672 2.61728 3.13396 3.20736 3.24070 3.38613 3.47999 4.13988 4.45733 4.50300 4.78081 4.84792 4.86317 4.92846 4.98546 5.13571 5.19557 5.68262 5.70348 5.76238 5.85031 5.98509 6.05509 6.09620 6.76487 6.90888 7.32564 7.34879 7.53522 8.03154 8.36761 8.56143 9.11110 10.59434 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.017569 B = 0.003305 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.317046 B = 8470.496809 C = 9342.115312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.354 6.354 3 C 0.542 3.458 4 O -0.498 6.498 5 C -0.249 4.249 6 C -0.049 4.049 7 C -0.090 4.090 8 C -0.204 4.204 9 C 0.574 3.426 10 O -0.511 6.511 11 N -0.702 5.702 12 C 0.245 3.755 13 H 0.090 0.910 14 C -0.555 4.555 15 H 0.080 0.920 16 C 0.066 3.934 17 N -0.838 5.838 18 Si 0.917 3.083 19 H -0.269 1.269 20 H -0.279 1.279 21 H -0.279 1.279 22 C 0.417 3.583 23 F -0.208 7.208 24 F -0.134 7.134 25 F -0.217 7.217 26 S 0.242 5.758 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.159 0.841 31 H 0.164 0.836 32 H 0.397 0.603 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.196 3.569 0.082 16.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.271 6.271 3 C 0.386 3.614 4 O -0.387 6.387 5 C -0.369 4.369 6 C -0.083 4.083 7 C -0.122 4.122 8 C -0.326 4.326 9 C 0.357 3.643 10 O -0.388 6.388 11 N -0.351 5.351 12 C 0.140 3.860 13 H 0.108 0.892 14 C -0.592 4.592 15 H 0.098 0.902 16 C -0.143 4.143 17 N -0.471 5.471 18 Si 0.743 3.257 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.205 1.205 22 C 0.361 3.639 23 F -0.190 7.190 24 F -0.116 7.116 25 F -0.199 7.199 26 S 0.512 5.488 27 H 0.123 0.877 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.177 0.823 31 H 0.181 0.819 32 H 0.231 0.769 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.719 2.766 0.131 15.961 hybrid contribution -0.163 0.392 0.033 0.426 sum -15.882 3.158 0.164 16.194 Atomic orbital electron populations 1.23330 0.75295 1.04089 1.02791 1.86583 1.24077 1.32007 1.84428 1.19745 0.86988 0.81819 0.72841 1.90873 1.65866 1.35891 1.46057 1.23695 0.93946 0.99024 1.20230 1.20554 0.92464 0.98585 0.96717 1.20533 0.95115 0.96387 1.00152 1.25463 0.98162 0.98341 1.10654 1.17131 0.85864 0.83502 0.77761 1.90839 1.45846 1.53091 1.49048 1.46023 1.10452 1.05463 1.73208 1.19853 0.78277 0.99702 0.88187 0.89227 1.20896 0.95122 0.99084 1.44054 0.90226 1.25078 0.95258 0.99409 0.94567 1.70395 0.98931 1.37763 1.39991 0.86131 0.78595 0.82181 0.78796 1.19302 1.20479 1.20477 1.23088 0.77999 0.71553 0.91302 1.92995 1.76187 1.70281 1.79508 1.93414 1.33258 1.88768 1.96117 1.93076 1.96404 1.42036 1.88388 1.84359 0.92958 1.05802 1.65656 0.87651 0.91611 0.91615 0.82309 0.81885 0.76859 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.34 16 2 O -0.35 -3.76 10.41 -40.82 -0.43 -4.19 16 3 C 0.54 6.63 7.94 34.29 0.27 6.91 16 4 O -0.50 -6.89 16.61 -19.30 -0.32 -7.21 16 5 C -0.25 -3.02 6.46 -36.59 -0.24 -3.25 16 6 C -0.05 -0.56 9.88 -40.67 -0.40 -0.96 16 7 C -0.09 -1.16 9.88 -40.69 -0.40 -1.56 16 8 C -0.20 -3.04 6.46 -36.53 -0.24 -3.28 16 9 C 0.57 11.01 7.34 -12.62 -0.09 10.91 16 10 O -0.51 -11.45 15.39 5.26 0.08 -11.37 16 11 N -0.70 -13.94 4.98 -56.08 -0.28 -14.22 16 12 C 0.24 5.86 2.21 -69.08 -0.15 5.71 16 13 H 0.09 2.37 7.58 -51.93 -0.39 1.98 16 14 C -0.55 -13.63 8.46 -34.44 -0.29 -13.93 16 15 H 0.08 1.84 7.74 -52.49 -0.41 1.44 16 16 C 0.07 1.66 5.20 -17.82 -0.09 1.57 16 17 N -0.84 -22.26 9.50 55.43 0.53 -21.73 16 18 Si 0.92 19.46 29.54 -169.99 -5.02 14.44 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 C 0.42 10.38 2.81 37.16 0.10 10.48 16 23 F -0.21 -4.98 16.94 2.25 0.04 -4.94 16 24 F -0.13 -3.62 12.91 2.25 0.03 -3.59 16 25 F -0.22 -5.35 15.67 2.25 0.04 -5.32 16 26 S 0.24 2.97 22.17 -107.50 -2.38 0.59 16 27 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.16 1.51 8.04 -52.49 -0.42 1.09 16 31 H 0.16 1.96 8.04 -52.49 -0.42 1.54 16 32 H 0.40 6.87 7.64 -40.82 -0.31 6.56 16 33 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 324.43 15.07 4.89 4.89 Total: -1.00 -30.16 324.43 -5.65 -35.81 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -2.36 Total: 2.90 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: -0.46 Total: 13.94 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.25 Total: -35.95 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.66 Total: -22.77 kcal Atomic # 9 Polarization: -13.95 SS G_CDS: 0.10 Total: -13.85 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -2.38 Total: 0.59 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.16 -5.65 -35.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928811317.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.520 kcal (2) G-P(sol) polarization free energy of solvation -30.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds