Wall clock time and date at job start Tue Mar 31 2020 19:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34831 * 116.99793 * 2 1 4 4 O 1.21550 * 119.99596 * 0.02562 * 3 2 1 5 5 C 1.47010 * 119.99998 * 180.02562 * 3 2 1 6 6 C 1.36689 * 125.16040 * 180.02562 * 5 3 2 7 7 C 1.36776 * 114.73109 * 179.78444 * 6 5 3 8 8 C 1.36632 * 114.75002 * 0.43332 * 7 6 5 9 9 C 1.47205 * 125.15490 * 179.85346 * 8 7 6 10 10 O 1.21613 * 120.00112 * 359.72069 * 9 8 7 11 11 N 1.34777 * 119.99637 * 179.71749 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72411 * 11 9 8 13 13 H 1.08999 * 109.47480 * 35.27807 * 12 11 9 14 14 C 1.50696 * 109.47278 * 155.27952 * 12 11 9 15 15 H 1.08002 * 120.00157 * 359.97438 * 14 12 11 16 16 C 1.37881 * 120.00447 * 179.97438 * 14 12 11 17 17 N 1.31510 * 119.99635 * 359.97438 * 16 14 12 18 18 Si 1.86792 * 120.00210 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47212 * 89.99990 * 18 16 14 20 20 H 1.48498 * 109.47421 * 210.00302 * 18 16 14 21 21 H 1.48504 * 109.47342 * 330.00327 * 18 16 14 22 22 C 1.53008 * 109.47014 * 275.27733 * 12 11 9 23 23 F 1.39897 * 109.46860 * 60.00461 * 22 12 11 24 24 F 1.39911 * 109.46854 * 179.97438 * 22 12 11 25 25 F 1.39898 * 109.47268 * 299.99952 * 22 12 11 26 26 S 1.75830 * 125.16546 * 0.02589 * 5 3 2 27 27 H 1.09000 * 109.47615 * 60.00007 * 1 2 3 28 28 H 1.09000 * 109.46768 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47629 * 299.99767 * 1 2 3 30 30 H 1.07992 * 122.63723 * 0.02562 * 6 5 3 31 31 H 1.07998 * 122.62429 * 180.27722 * 7 6 5 32 32 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 33 33 H 0.97000 * 120.00295 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2014 0.0000 4 8 1.4019 2.2207 0.0005 5 6 3.5321 1.2784 -0.0006 6 6 4.2597 2.4356 -0.0001 7 6 5.6159 2.2587 0.0039 8 6 6.0228 0.9544 -0.0026 9 6 7.4241 0.5037 -0.0032 10 8 8.3255 1.3201 -0.0028 11 7 7.7081 -0.8138 -0.0042 12 6 9.1027 -1.2624 -0.0109 13 1 9.7085 -0.5749 0.5794 14 6 9.1887 -2.6447 0.5833 15 1 8.2940 -3.1394 0.9315 16 6 10.4095 -3.2779 0.6824 17 7 11.4989 -2.6757 0.2579 18 14 10.5161 -4.9908 1.4195 19 1 10.3579 -6.0031 0.3446 20 1 11.8372 -5.1666 2.0745 21 1 9.4377 -5.1648 2.4257 22 6 9.6218 -1.2928 -1.4500 23 9 9.5421 -0.0096 -2.0015 24 9 10.9539 -1.7206 -1.4563 25 9 8.8444 -2.1753 -2.2076 26 16 4.6187 -0.1040 -0.0019 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.7998 3.4127 0.0011 31 1 6.3109 3.0854 0.0091 32 1 6.9892 -1.4650 -0.0049 33 1 12.3578 -3.1209 0.3279 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928811318.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:38 Heat of formation + Delta-G solvation = -218.232362 kcal Electronic energy + Delta-G solvation = -26692.697684 eV Core-core repulsion = 22010.573302 eV Total energy + Delta-G solvation = -4682.124382 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.043 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.43875 -46.09456 -45.69637 -40.60380 -39.36113 -37.54614 -36.49692 -34.83770 -32.74509 -30.78456 -28.88477 -27.82540 -25.60289 -24.64189 -22.47000 -21.97929 -20.60414 -19.31377 -19.13898 -17.73431 -17.07920 -16.90678 -16.73983 -16.68335 -16.36228 -16.14162 -15.57620 -15.04853 -14.66286 -14.47056 -14.04398 -13.73925 -13.50805 -13.14399 -13.01250 -12.70309 -12.64838 -12.53705 -12.48126 -12.37375 -12.32735 -12.08354 -11.90567 -11.29122 -11.22397 -11.15093 -10.94975 -10.93341 -10.91132 -10.49214 -9.77736 -9.69514 -9.10873 -8.83851 -8.81639 -8.46969 -6.31908 -4.57114 -0.13769 1.12487 1.56208 1.79698 2.30720 2.61729 3.14564 3.20643 3.23053 3.38583 3.48043 4.14144 4.45763 4.50311 4.78059 4.84861 4.86328 4.92872 4.98558 5.13582 5.19593 5.68268 5.70387 5.76330 5.85038 5.98497 6.05521 6.09638 6.76635 6.90924 7.32534 7.34852 7.53604 8.03234 8.36617 8.56113 9.11113 10.59611 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.017586 B = 0.003305 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.811757 B = 8469.882556 C = 9340.987933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.354 6.354 3 C 0.542 3.458 4 O -0.497 6.497 5 C -0.249 4.249 6 C -0.049 4.049 7 C -0.090 4.090 8 C -0.204 4.204 9 C 0.574 3.426 10 O -0.511 6.511 11 N -0.702 5.702 12 C 0.245 3.755 13 H 0.090 0.910 14 C -0.555 4.555 15 H 0.079 0.921 16 C 0.066 3.934 17 N -0.838 5.838 18 Si 0.917 3.083 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.269 1.269 22 C 0.416 3.584 23 F -0.217 7.217 24 F -0.134 7.134 25 F -0.208 7.208 26 S 0.242 5.758 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.159 0.841 31 H 0.164 0.836 32 H 0.397 0.603 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.183 3.566 -0.027 16.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.271 6.271 3 C 0.386 3.614 4 O -0.387 6.387 5 C -0.369 4.369 6 C -0.083 4.083 7 C -0.122 4.122 8 C -0.326 4.326 9 C 0.357 3.643 10 O -0.388 6.388 11 N -0.352 5.352 12 C 0.140 3.860 13 H 0.108 0.892 14 C -0.592 4.592 15 H 0.097 0.903 16 C -0.143 4.143 17 N -0.471 5.471 18 Si 0.743 3.257 19 H -0.201 1.201 20 H -0.207 1.207 21 H -0.194 1.194 22 C 0.360 3.640 23 F -0.199 7.199 24 F -0.115 7.115 25 F -0.190 7.190 26 S 0.512 5.488 27 H 0.084 0.916 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.177 0.823 31 H 0.181 0.819 32 H 0.231 0.769 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.701 2.766 -0.071 15.943 hybrid contribution -0.175 0.386 -0.047 0.426 sum -15.876 3.152 -0.119 16.186 Atomic orbital electron populations 1.23328 0.75302 1.04088 1.02792 1.86586 1.24074 1.31999 1.84434 1.19748 0.86988 0.81819 0.72839 1.90873 1.65854 1.35900 1.46055 1.23693 0.93946 0.99024 1.20236 1.20553 0.92467 0.98583 0.96714 1.20536 0.95112 0.96387 1.00154 1.25469 0.98166 0.98342 1.10648 1.17131 0.85861 0.83504 0.77761 1.90836 1.45857 1.53078 1.49036 1.46027 1.10452 1.05461 1.73214 1.19848 0.78296 0.99677 0.88147 0.89227 1.20855 0.95158 0.98901 1.44300 0.90281 1.25078 0.95260 0.99418 0.94549 1.70389 0.99009 1.37751 1.39929 0.86180 0.77891 0.82365 0.79261 1.20120 1.20725 1.19384 1.23104 0.77952 0.71539 0.91384 1.93075 1.96390 1.41866 1.88573 1.93418 1.33225 1.88763 1.96144 1.92996 1.76049 1.70441 1.79488 1.84356 0.92957 1.05805 1.65655 0.91619 0.87653 0.91609 0.82310 0.81883 0.76864 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.34 16 2 O -0.35 -3.76 10.41 -40.85 -0.43 -4.19 16 3 C 0.54 6.63 7.94 34.29 0.27 6.91 16 4 O -0.50 -6.89 16.61 -19.30 -0.32 -7.21 16 5 C -0.25 -3.02 6.46 -36.59 -0.24 -3.25 16 6 C -0.05 -0.56 9.88 -40.67 -0.40 -0.96 16 7 C -0.09 -1.16 9.88 -40.69 -0.40 -1.56 16 8 C -0.20 -3.04 6.46 -36.52 -0.24 -3.28 16 9 C 0.57 11.01 7.33 -12.62 -0.09 10.92 16 10 O -0.51 -11.45 15.38 5.27 0.08 -11.36 16 11 N -0.70 -13.94 4.98 -56.08 -0.28 -14.22 16 12 C 0.25 5.88 2.21 -69.08 -0.15 5.72 16 13 H 0.09 2.37 7.58 -51.93 -0.39 1.98 16 14 C -0.56 -13.65 8.46 -34.44 -0.29 -13.94 16 15 H 0.08 1.83 7.74 -52.49 -0.41 1.42 16 16 C 0.07 1.67 5.20 -17.82 -0.09 1.57 16 17 N -0.84 -22.27 9.50 55.43 0.53 -21.74 16 18 Si 0.92 19.46 29.54 -169.99 -5.02 14.44 16 19 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 C 0.42 10.37 2.81 37.16 0.10 10.48 16 23 F -0.22 -5.35 15.65 2.25 0.04 -5.32 16 24 F -0.13 -3.62 12.91 2.25 0.03 -3.59 16 25 F -0.21 -4.98 16.94 2.25 0.04 -4.95 16 26 S 0.24 2.97 22.17 -107.50 -2.38 0.59 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.16 1.51 8.04 -52.49 -0.42 1.09 16 31 H 0.16 1.96 8.04 -52.49 -0.42 1.54 16 32 H 0.40 6.87 7.64 -40.82 -0.31 6.56 16 33 H 0.27 6.79 8.31 -40.82 -0.34 6.46 16 LS Contribution 324.39 15.07 4.89 4.89 Total: -1.00 -30.15 324.39 -5.65 -35.81 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -2.36 Total: 2.92 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: -0.46 Total: 13.94 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.25 Total: -35.97 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.67 Total: -22.77 kcal Atomic # 9 Polarization: -13.96 SS G_CDS: 0.10 Total: -13.85 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -2.38 Total: 0.59 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.15 -5.65 -35.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928811318.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.427 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds