Wall clock time and date at job start Tue Mar 31 2020 19:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99574 * 2 1 4 4 H 1.48498 * 109.46885 * 264.64708 * 3 2 1 5 5 H 1.48490 * 109.47074 * 24.64839 * 3 2 1 6 6 H 1.48498 * 109.46666 * 144.65151 * 3 2 1 7 7 C 1.37869 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00244 * 5.03618 * 7 2 1 9 9 C 1.50705 * 120.00203 * 185.03778 * 7 2 1 10 10 H 1.09004 * 109.46732 * 325.31755 * 9 7 2 11 11 N 1.46500 * 109.46797 * 85.31106 * 9 7 2 12 12 C 1.34775 * 120.00184 * 204.99979 * 11 9 7 13 13 O 1.21291 * 119.99830 * 0.02562 * 12 11 9 14 14 C 1.50697 * 120.00435 * 179.97438 * 12 11 9 15 15 H 1.09000 * 109.47490 * 305.00353 * 14 12 11 16 16 O 1.42900 * 109.47314 * 185.00301 * 14 12 11 17 17 C 1.50706 * 109.46712 * 65.00264 * 14 12 11 18 18 C 1.38230 * 120.00497 * 95.00152 * 17 14 12 19 19 C 1.38221 * 120.01403 * 180.02562 * 18 17 14 20 20 C 1.38262 * 120.02647 * 359.97438 * 19 18 17 21 21 C 1.38197 * 120.00854 * 359.97438 * 20 19 18 22 22 C 1.38326 * 120.00497 * 274.72433 * 17 14 12 23 23 Cl 1.73602 * 120.01524 * 359.97438 * 22 17 14 24 24 C 1.52990 * 109.47377 * 205.31134 * 9 7 2 25 25 F 1.39896 * 109.47294 * 304.14684 * 24 9 7 26 26 F 1.39907 * 109.47278 * 64.14684 * 24 9 7 27 27 F 1.39898 * 109.47352 * 184.14366 * 24 9 7 28 28 H 0.96999 * 120.00146 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00368 * 25.00002 * 11 9 7 30 30 H 0.96708 * 114.00151 * 300.00002 * 16 14 12 31 31 H 1.08006 * 119.99970 * 0.02562 * 18 17 14 32 32 H 1.08000 * 119.99259 * 179.97438 * 19 18 17 33 33 H 1.07998 * 119.99807 * 179.97438 * 20 19 18 34 34 H 1.08005 * 119.99969 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.6096 1.9812 -1.3940 5 1 1.3945 2.6827 0.5839 6 1 3.4855 1.4755 0.8100 7 6 2.0045 -1.1940 -0.0005 8 1 1.4677 -2.1275 -0.0831 9 6 3.5072 -1.1965 0.1141 10 1 3.9125 -0.3269 -0.4034 11 7 3.8892 -1.1456 1.5275 12 6 5.0884 -0.6442 1.8839 13 8 5.8511 -0.2347 1.0344 14 6 5.4811 -0.5913 3.3378 15 1 4.7190 -0.0524 3.9007 16 8 6.7348 0.0820 3.4684 17 6 5.6054 -1.9935 3.8758 18 6 6.8395 -2.6155 3.9059 19 6 6.9536 -3.9018 4.3988 20 6 5.8337 -4.5669 4.8626 21 6 4.5996 -3.9456 4.8340 22 6 4.4855 -2.6562 4.3450 23 17 2.9366 -1.8728 4.3148 24 6 4.0649 -2.4727 -0.5193 25 9 3.4730 -3.5887 0.0818 26 9 3.7814 -2.4757 -1.8893 27 9 5.4501 -2.5206 -0.3296 28 1 -0.4850 0.8400 0.0004 29 1 3.2791 -1.4728 2.2069 30 1 7.4611 -0.3432 2.9920 31 1 7.7148 -2.0964 3.5441 32 1 7.9179 -4.3876 4.4218 33 1 5.9234 -5.5721 5.2473 34 1 3.7250 -4.4652 5.1967 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928812287.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:15 Heat of formation + Delta-G solvation = -244.804352 kcal Electronic energy + Delta-G solvation = -28524.847261 eV Core-core repulsion = 23839.526924 eV Total energy + Delta-G solvation = -4685.320336 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.048 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.95162 -48.45717 -48.43588 -41.60547 -39.99471 -37.92356 -37.52693 -36.53430 -34.59553 -32.94934 -31.80120 -31.03396 -27.95325 -26.96381 -23.75949 -23.72234 -22.86798 -21.67436 -20.34226 -19.43524 -19.23949 -18.79049 -18.53843 -18.35925 -17.63628 -17.11735 -16.72136 -16.24444 -15.69422 -15.65522 -15.32689 -15.29267 -14.97106 -14.92194 -14.87451 -14.76096 -14.65907 -14.62566 -14.57071 -14.39764 -13.69827 -13.45405 -13.07331 -12.95775 -12.66939 -12.55389 -12.42115 -12.25071 -12.08175 -11.89812 -11.83733 -11.10804 -10.90047 -10.25485 -9.95388 -9.76913 -8.58987 -6.76963 0.00058 0.19081 0.96851 1.20774 1.26645 1.33340 1.39993 1.86677 2.06414 2.13126 2.54751 2.88251 3.10646 3.15577 3.26972 3.30889 3.44939 3.68490 3.76393 3.92821 4.15094 4.33035 4.36263 4.43017 4.55707 4.83321 4.88353 5.13984 5.26526 5.31353 5.38255 5.77466 5.82201 6.29873 6.38980 6.55582 6.95330 7.04882 8.53129 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.012554 B = 0.005934 C = 0.005587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.876301 B = 4717.794499 C = 5010.428794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.067 3.933 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.205 3.795 10 H 0.078 0.922 11 N -0.708 5.708 12 C 0.475 3.525 13 O -0.560 6.560 14 C 0.138 3.862 15 H 0.135 0.865 16 O -0.531 6.531 17 C -0.129 4.129 18 C -0.102 4.102 19 C -0.105 4.105 20 C -0.097 4.097 21 C -0.111 4.111 22 C -0.049 4.049 23 Cl -0.066 7.066 24 C 0.445 3.555 25 F -0.185 7.185 26 F -0.184 7.184 27 F -0.189 7.189 28 H 0.281 0.719 29 H 0.405 0.595 30 H 0.392 0.608 31 H 0.149 0.851 32 H 0.166 0.834 33 H 0.169 0.831 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.970 -7.530 11.884 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.735 3.265 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.086 0.914 9 C 0.101 3.899 10 H 0.096 0.904 11 N -0.366 5.366 12 C 0.261 3.739 13 O -0.440 6.440 14 C 0.075 3.925 15 H 0.152 0.848 16 O -0.337 6.337 17 C -0.130 4.130 18 C -0.120 4.120 19 C -0.123 4.123 20 C -0.115 4.115 21 C -0.129 4.129 22 C -0.076 4.076 23 Cl -0.037 7.037 24 C 0.389 3.611 25 F -0.167 7.167 26 F -0.166 7.166 27 F -0.171 7.171 28 H 0.091 0.909 29 H 0.248 0.752 30 H 0.243 0.757 31 H 0.167 0.833 32 H 0.184 0.816 33 H 0.187 0.813 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 11.840 -6.688 11.649 17.905 hybrid contribution -0.278 0.293 -0.516 0.655 sum 11.562 -6.394 11.133 17.277 Atomic orbital electron populations 1.69917 1.07450 1.29369 1.45979 1.25466 0.95266 1.01567 0.91731 0.86253 0.79800 0.80245 0.80246 1.18644 1.19233 1.18277 1.20688 0.87328 0.95545 1.54341 0.91384 1.19809 0.96807 0.90690 0.82636 0.90440 1.47685 1.17777 1.61740 1.09422 1.22050 0.82095 0.77092 0.92621 1.90645 1.52066 1.48491 1.52770 1.20635 0.89308 0.91755 0.90793 0.84821 1.86589 1.17547 1.54885 1.74716 1.20058 0.94601 0.95845 1.02526 1.21188 0.95832 0.96185 0.98774 1.21658 1.00852 0.93461 0.96312 1.21646 0.90849 1.01370 0.97602 1.21396 1.00583 0.91842 0.99086 1.21025 0.85777 0.95853 1.04916 1.98392 1.28574 1.80800 1.95930 1.21328 0.75005 0.87988 0.76790 1.93086 1.83935 1.56192 1.83464 1.93102 1.93456 1.96890 1.33141 1.93134 1.32020 1.96975 1.94966 0.90933 0.75210 0.75652 0.83344 0.81640 0.81307 0.82895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.73 13.96 21.44 0.30 -49.43 16 2 C 0.07 3.55 5.47 84.65 0.46 4.01 16 3 Si 0.91 42.04 26.92 68.60 1.85 43.89 16 4 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 6 H -0.26 -12.08 6.83 99.48 0.68 -11.40 16 7 C -0.54 -28.57 8.68 25.60 0.22 -28.34 16 8 H 0.07 3.92 7.69 -2.91 -0.02 3.89 16 9 C 0.21 9.75 1.45 44.24 0.06 9.82 16 10 H 0.08 3.86 5.33 -2.38 -0.01 3.85 16 11 N -0.71 -30.15 4.89 -446.10 -2.18 -32.33 16 12 C 0.48 18.99 6.45 87.66 0.56 19.56 16 13 O -0.56 -25.06 14.93 15.93 0.24 -24.83 16 14 C 0.14 4.36 3.22 29.10 0.09 4.46 16 15 H 0.13 4.17 7.11 -2.39 -0.02 4.15 16 16 O -0.53 -15.37 12.64 -129.99 -1.64 -17.01 16 17 C -0.13 -3.45 5.02 -19.84 -0.10 -3.55 16 18 C -0.10 -2.12 9.30 22.26 0.21 -1.91 16 19 C -0.11 -1.64 10.05 22.27 0.22 -1.41 16 20 C -0.10 -1.48 10.05 22.27 0.22 -1.25 16 21 C -0.11 -2.24 9.83 22.29 0.22 -2.02 16 22 C -0.05 -1.29 6.16 22.32 0.14 -1.15 16 23 Cl -0.07 -1.94 24.34 -2.72 -0.07 -2.01 16 24 C 0.44 20.01 2.83 71.98 0.20 20.21 16 25 F -0.19 -8.14 16.65 44.97 0.75 -7.39 16 26 F -0.18 -8.33 17.12 44.97 0.77 -7.56 16 27 F -0.19 -8.16 15.57 44.97 0.70 -7.46 16 28 H 0.28 14.53 8.31 -92.71 -0.77 13.76 16 29 H 0.40 16.45 4.85 -92.71 -0.45 16.00 16 30 H 0.39 9.14 7.07 -74.05 -0.52 8.62 16 31 H 0.15 2.50 6.41 -2.91 -0.02 2.48 16 32 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 33 H 0.17 1.37 8.06 -2.91 -0.02 1.34 16 34 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -64.80 317.48 3.44 -61.36 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.21 Total: 24.37 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: 2.52 Total: 18.40 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -1.88 Total: -81.76 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -1.41 Total: -41.84 kcal Atomic # 9 Polarization: -24.63 SS G_CDS: 2.22 Total: -22.41 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.85 Total: 43.89 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -0.07 Total: -2.01 kcal Total: -64.80 3.44 -61.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928812287.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.449 kcal (2) G-P(sol) polarization free energy of solvation -64.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds