Wall clock time and date at job start Tue Mar 31 2020 19:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21273 * 120.00202 * 2 1 4 4 N 1.34777 * 119.99927 * 179.72608 * 2 1 3 5 5 C 1.38891 * 120.00329 * 180.27083 * 4 2 1 6 6 N 1.29515 * 125.27203 * 179.71995 * 5 4 2 7 7 C 1.33645 * 115.66874 * 179.79074 * 6 5 4 8 8 C 1.47195 * 122.49970 * 180.23778 * 7 6 5 9 9 O 1.21648 * 119.99608 * 180.28075 * 8 7 6 10 10 N 1.34777 * 120.00628 * 0.28696 * 8 7 6 11 11 C 1.46496 * 120.00402 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47192 * 325.00336 * 11 10 8 13 13 C 1.50702 * 109.47147 * 204.99949 * 11 10 8 14 14 H 1.07992 * 120.00328 * 274.94291 * 13 11 10 15 15 C 1.37883 * 119.99623 * 94.94453 * 13 11 10 16 16 N 1.31513 * 119.99841 * 184.87650 * 15 13 11 17 17 Si 1.86800 * 119.99908 * 4.87933 * 15 13 11 18 18 H 1.48499 * 109.47277 * 84.81050 * 17 15 13 19 19 H 1.48504 * 109.46719 * 204.80499 * 17 15 13 20 20 H 1.48498 * 109.47325 * 324.80904 * 17 15 13 21 21 C 1.52999 * 109.47011 * 85.00236 * 11 10 8 22 22 F 1.39903 * 109.46898 * 54.93575 * 21 11 10 23 23 F 1.39899 * 109.47271 * 174.93871 * 21 11 10 24 24 F 1.39902 * 109.47144 * 294.93809 * 21 11 10 25 25 C 1.34886 * 114.99181 * 0.50859 * 7 6 5 26 26 S 1.70980 * 109.20131 * 359.72898 * 25 7 6 27 27 H 1.09003 * 109.46978 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47644 * 119.99344 * 1 2 3 29 29 H 1.08996 * 109.47315 * 240.00175 * 1 2 3 30 30 H 0.97001 * 120.00035 * 0.27528 * 4 2 1 31 31 H 0.97003 * 119.99303 * 0.02562 * 10 8 7 32 32 H 0.97000 * 119.99986 * 180.02562 * 16 15 13 33 33 H 1.08006 * 125.39965 * 179.71447 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1672 0.0056 5 6 3.5697 -1.1673 0.0113 6 7 4.3175 -2.2247 0.0221 7 6 5.6353 -2.0018 0.0214 8 6 6.6221 -3.0940 0.0276 9 8 7.8115 -2.8389 0.0319 10 7 6.2079 -4.3766 0.0285 11 6 7.1901 -5.4635 0.0341 12 1 8.0604 -5.1698 -0.5526 13 6 6.5737 -6.7007 -0.5664 14 1 5.9885 -7.3664 0.0506 15 6 6.7568 -6.9826 -1.9036 16 7 6.1413 -8.0085 -2.4497 17 14 7.8793 -5.9073 -2.9396 18 1 9.2826 -6.3700 -2.7920 19 1 7.4752 -5.9995 -4.3656 20 1 7.7725 -4.4977 -2.4849 21 6 7.6199 -5.7550 1.4732 22 9 6.4889 -6.0195 2.2532 23 9 8.4686 -6.8670 1.4903 24 9 8.2951 -4.6450 1.9922 25 6 5.9933 -0.7014 0.0204 26 16 4.5858 0.2694 0.0127 27 1 -0.3633 1.0277 0.0005 28 1 -0.3634 -0.5137 -0.8900 29 1 -0.3634 -0.5138 0.8900 30 1 1.6958 -2.0072 0.0056 31 1 5.2594 -4.5799 0.0246 32 1 6.2704 -8.2071 -3.3903 33 1 7.0082 -0.3318 0.0242 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928815108.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:03 Heat of formation + Delta-G solvation = -205.976867 kcal Electronic energy + Delta-G solvation = -26975.371633 eV Core-core repulsion = 22326.071440 eV Total energy + Delta-G solvation = -4649.300193 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.049 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.91168 -48.42237 -48.39442 -41.68781 -41.06279 -39.56539 -36.70018 -36.03958 -34.53296 -31.93439 -31.11797 -30.13852 -26.96546 -26.49281 -24.05979 -22.77376 -22.50219 -21.18431 -20.10323 -19.52976 -19.35210 -18.70478 -18.53141 -18.19756 -17.85924 -17.54059 -17.05276 -16.76044 -16.14402 -15.98885 -15.37488 -15.30953 -15.20191 -14.98144 -14.89269 -14.85217 -14.59917 -14.54997 -14.52714 -14.26500 -13.77530 -13.41758 -13.14551 -13.09879 -13.04927 -12.63022 -12.20009 -12.03361 -11.88868 -11.44729 -11.23762 -11.06661 -10.98171 -10.50763 -10.22598 -9.42321 -8.58228 -6.76614 -0.55352 -0.09375 0.58442 0.63789 1.23455 1.29076 1.39368 1.47359 1.50201 1.91036 2.11622 2.14485 2.32480 2.90099 3.16195 3.29393 3.32734 3.56257 3.72333 4.07375 4.16754 4.34968 4.52330 4.56366 4.67563 4.89752 4.92687 5.14520 5.34359 5.75574 5.85372 6.37147 6.40876 6.66978 6.71587 6.96497 7.11498 8.54174 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.014233 B = 0.003779 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.803214 B = 7407.379014 C = 7860.576873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.510 3.490 3 O -0.548 6.548 4 N -0.612 5.612 5 C 0.244 3.756 6 N -0.491 5.491 7 C 0.009 3.991 8 C 0.574 3.426 9 O -0.566 6.566 10 N -0.692 5.692 11 C 0.208 3.792 12 H 0.081 0.919 13 C -0.537 4.537 14 H 0.068 0.932 15 C 0.067 3.933 16 N -0.894 5.894 17 Si 0.916 3.084 18 H -0.258 1.258 19 H -0.267 1.267 20 H -0.264 1.264 21 C 0.440 3.560 22 F -0.187 7.187 23 F -0.182 7.182 24 F -0.193 7.193 25 C -0.263 4.263 26 S 0.311 5.689 27 H 0.107 0.893 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.440 0.560 31 H 0.415 0.585 32 H 0.281 0.719 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.663 16.402 3.350 20.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.300 3.700 3 O -0.425 6.425 4 N -0.265 5.265 5 C -0.126 4.126 6 N -0.215 5.215 7 C -0.125 4.125 8 C 0.359 3.641 9 O -0.446 6.446 10 N -0.343 5.343 11 C 0.103 3.897 12 H 0.099 0.901 13 C -0.575 4.575 14 H 0.086 0.914 15 C -0.140 4.140 16 N -0.528 5.528 17 Si 0.739 3.261 18 H -0.182 1.182 19 H -0.192 1.192 20 H -0.189 1.189 21 C 0.385 3.615 22 F -0.168 7.168 23 F -0.163 7.163 24 F -0.174 7.174 25 C -0.407 4.407 26 S 0.563 5.437 27 H 0.126 0.874 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.283 0.717 31 H 0.253 0.747 32 H 0.091 0.909 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -11.989 17.720 3.216 21.635 hybrid contribution 0.873 -1.453 -0.238 1.712 sum -11.116 16.267 2.979 19.926 Atomic orbital electron populations 1.21989 0.84264 1.07691 1.07561 1.22378 0.93423 0.80970 0.73184 1.90659 1.70599 1.31885 1.49346 1.43108 0.99864 1.12921 1.70581 1.24641 0.91470 0.93455 1.03071 1.66986 1.02851 1.30501 1.21117 1.19680 0.89031 0.93489 1.10320 1.17884 0.87281 0.82999 0.75958 1.90748 1.17157 1.84383 1.52288 1.46954 1.11666 1.03998 1.71681 1.19835 0.93158 0.89172 0.87538 0.90127 1.20644 1.35460 1.05325 0.96076 0.91351 1.25508 0.95079 0.95325 0.98106 1.69912 1.40547 1.28029 1.14302 0.86192 0.80644 0.80209 0.79079 1.18206 1.19190 1.18898 1.21532 0.74649 0.73617 0.91742 1.93077 1.51905 1.93999 1.77868 1.93104 1.71874 1.54330 1.97016 1.93148 1.81267 1.53757 1.89244 1.27131 1.09249 0.97457 1.06821 1.84619 0.89306 1.04058 1.65748 0.87421 0.86034 0.85953 0.71739 0.74719 0.90881 0.78788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.43 10.32 71.23 0.74 0.31 16 2 C 0.51 6.92 7.90 87.66 0.69 7.62 16 3 O -0.55 -11.51 14.59 -3.01 -0.04 -11.56 16 4 N -0.61 -9.72 5.40 -310.01 -1.67 -11.40 16 5 C 0.24 6.08 8.36 179.27 1.50 7.58 16 6 N -0.49 -15.47 10.11 -187.17 -1.89 -17.37 16 7 C 0.01 0.32 6.66 40.45 0.27 0.59 16 8 C 0.57 24.72 7.44 86.60 0.64 25.37 16 9 O -0.57 -26.85 15.22 -4.18 -0.06 -26.91 16 10 N -0.69 -30.60 4.90 -449.58 -2.20 -32.81 16 11 C 0.21 10.02 1.71 44.25 0.08 10.10 16 12 H 0.08 4.07 4.73 -2.39 -0.01 4.06 16 13 C -0.54 -28.45 8.52 25.60 0.22 -28.24 16 14 H 0.07 3.93 8.00 -2.91 -0.02 3.90 16 15 C 0.07 3.57 5.47 84.66 0.46 4.03 16 16 N -0.89 -49.81 13.96 21.45 0.30 -49.51 16 17 Si 0.92 42.26 26.99 68.60 1.85 44.12 16 18 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.26 -12.60 6.82 99.48 0.68 -11.92 16 21 C 0.44 20.36 2.83 71.98 0.20 20.57 16 22 F -0.19 -8.35 16.93 44.97 0.76 -7.59 16 23 F -0.18 -8.42 16.89 44.97 0.76 -7.66 16 24 F -0.19 -8.77 15.83 44.97 0.71 -8.06 16 25 C -0.26 -7.78 10.55 67.05 0.71 -7.08 16 26 S 0.31 7.35 20.29 -56.49 -1.15 6.21 16 27 H 0.11 0.29 8.12 -2.39 -0.02 0.27 16 28 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.12 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H 0.44 4.57 8.82 -92.71 -0.82 3.75 16 31 H 0.41 17.45 8.07 -92.71 -0.75 16.70 16 32 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16 33 H 0.19 5.35 7.99 -2.91 -0.02 5.32 16 Total: -1.00 -70.56 322.24 2.51 -68.06 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -0.36 Total: 13.64 kcal Atomic # 6 Polarization: 35.33 SS G_CDS: 5.51 Total: 40.84 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -5.47 Total: -111.08 kcal Atomic # 8 Polarization: -38.36 SS G_CDS: -0.11 Total: -38.47 kcal Atomic # 9 Polarization: -25.54 SS G_CDS: 2.23 Total: -23.31 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.85 Total: 44.12 kcal Atomic # 16 Polarization: 7.35 SS G_CDS: -1.15 Total: 6.21 kcal Total: -70.56 2.51 -68.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928815108.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.921 kcal (2) G-P(sol) polarization free energy of solvation -70.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds