Wall clock time and date at job start Tue Mar 31 2020 20:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00015 * 204.99781 * 11 9 7 13 13 O 1.21585 * 120.00300 * 0.02562 * 12 11 9 14 14 N 1.34779 * 119.99711 * 180.02562 * 12 11 9 15 15 C 1.46507 * 119.99956 * 180.02562 * 14 12 11 16 16 C 1.50693 * 109.47141 * 179.97438 * 15 14 12 17 17 C 1.38242 * 119.60386 * 94.99655 * 16 15 14 18 18 C 1.38603 * 119.17453 * 179.97438 * 17 16 15 19 19 C 1.38779 * 118.41212 * 0.02562 * 18 17 16 20 20 Cl 1.73600 * 120.43120 * 179.97438 * 19 18 17 21 21 C 1.38308 * 119.13656 * 359.97438 * 19 18 17 22 22 N 1.31849 * 119.60764 * 274.72522 * 16 15 14 23 23 C 1.53000 * 109.47174 * 300.00082 * 9 7 2 24 24 F 1.39903 * 109.47440 * 60.00123 * 23 9 7 25 25 F 1.39899 * 109.47255 * 180.02562 * 23 9 7 26 26 F 1.39900 * 109.47102 * 299.99874 * 23 9 7 27 27 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 28 28 H 0.97005 * 119.99880 * 25.00131 * 11 9 7 29 29 H 0.97001 * 120.00313 * 359.97438 * 14 12 11 30 30 H 1.09005 * 109.46616 * 299.99557 * 15 14 12 31 31 H 1.08993 * 109.46852 * 59.99259 * 15 14 12 32 32 H 1.07999 * 120.40923 * 359.97438 * 17 16 15 33 33 H 1.08005 * 120.79354 * 180.02562 * 18 17 16 34 34 H 1.08001 * 119.62738 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 -0.4938 13 8 0.7166 -4.9703 -0.9392 14 7 2.7125 -5.8369 -0.4933 15 6 2.3147 -7.1408 -1.0299 16 6 3.4671 -8.1047 -0.9134 17 6 3.5459 -8.9458 0.1808 18 6 4.6094 -9.8293 0.2787 19 6 5.5595 -9.8336 -0.7328 20 17 6.9133 -10.9181 -0.6630 21 6 5.4138 -8.9626 -1.7973 22 7 4.3853 -8.1396 -1.8590 23 6 0.3719 -2.5805 1.2490 24 9 -0.5373 -1.5171 1.2496 25 9 -0.3272 -3.7922 1.2493 26 9 1.1766 -2.5067 2.3910 27 1 -0.4850 0.8401 0.0004 28 1 3.0969 -3.4866 0.3545 29 1 3.6064 -5.7108 -0.1383 30 1 1.4635 -7.5216 -0.4654 31 1 2.0364 -7.0326 -2.0782 32 1 2.7883 -8.9149 0.9498 33 1 4.6966 -10.4984 1.1221 34 1 6.1483 -8.9596 -2.5891 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932911220.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:06 Heat of formation + Delta-G solvation = -134.187934 kcal Electronic energy + Delta-G solvation = -26538.253108 eV Core-core repulsion = 21890.022211 eV Total energy + Delta-G solvation = -4648.230897 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.055 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.31044 -45.96249 -45.57886 -40.78248 -39.25947 -37.13371 -35.19278 -34.30050 -32.91993 -32.60644 -31.51133 -28.48534 -26.36167 -24.52716 -24.17444 -22.55394 -21.52197 -20.24056 -18.52987 -17.55389 -17.15230 -16.90418 -16.80919 -16.56997 -16.31267 -15.63562 -15.35423 -14.85711 -14.63267 -14.42928 -14.15351 -13.76417 -13.39836 -13.27440 -12.88792 -12.66443 -12.49627 -12.40381 -12.35722 -12.27886 -12.23982 -11.94262 -11.78513 -11.63209 -11.15397 -10.85988 -10.78498 -10.38934 -10.30554 -9.96193 -9.70016 -9.64441 -9.26204 -8.87008 -8.69858 -8.17018 -6.22155 -4.46002 0.38483 0.71575 1.55780 2.93723 3.20999 3.25790 3.27414 3.46828 3.75312 3.85429 4.20103 4.22222 4.26815 4.47368 4.59393 4.75302 4.85586 4.95084 5.19460 5.31272 5.43042 5.65232 5.72920 5.87248 5.91248 6.04106 6.24490 6.66130 6.83909 7.20349 7.36469 7.44611 7.63055 7.67851 8.50183 8.63691 9.14018 9.24881 10.69449 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.021141 B = 0.002486 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.136802 B =11261.298880 C =11864.969465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.065 3.935 3 Si 0.915 3.085 4 H -0.283 1.283 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.553 4.553 8 H 0.076 0.924 9 C 0.263 3.737 10 H 0.086 0.914 11 N -0.725 5.725 12 C 0.702 3.298 13 O -0.582 6.582 14 N -0.748 5.748 15 C 0.193 3.807 16 C 0.119 3.881 17 C -0.139 4.139 18 C -0.067 4.067 19 C -0.089 4.089 20 Cl -0.055 7.055 21 C 0.116 3.884 22 N -0.451 5.451 23 C 0.416 3.584 24 F -0.137 7.137 25 F -0.217 7.217 26 F -0.211 7.211 27 H 0.269 0.731 28 H 0.394 0.606 29 H 0.393 0.607 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.775 -17.866 0.614 20.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.209 1.209 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.590 4.590 8 H 0.095 0.905 9 C 0.157 3.843 10 H 0.103 0.897 11 N -0.377 5.377 12 C 0.401 3.599 13 O -0.459 6.459 14 N -0.405 5.405 15 C 0.067 3.933 16 C -0.019 4.019 17 C -0.159 4.159 18 C -0.093 4.093 19 C -0.118 4.118 20 Cl -0.027 7.027 21 C -0.043 4.043 22 N -0.160 5.160 23 C 0.359 3.641 24 F -0.119 7.119 25 F -0.199 7.199 26 F -0.192 7.192 27 H 0.079 0.921 28 H 0.228 0.772 29 H 0.227 0.773 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.168 0.832 33 H 0.165 0.835 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 9.503 -17.385 -0.504 19.819 hybrid contribution 1.393 0.145 1.426 1.999 sum 10.896 -17.240 0.922 20.415 Atomic orbital electron populations 1.70394 1.05837 1.27466 1.43577 1.25076 0.95156 1.00067 0.94077 0.86270 0.79328 0.81333 0.78886 1.20879 1.19862 1.19790 1.20843 0.93765 0.88128 1.56237 0.90546 1.19602 0.88231 0.84867 0.91610 0.89651 1.45252 1.17415 1.09593 1.65479 1.15989 0.84230 0.80408 0.79236 1.90928 1.19575 1.82804 1.52570 1.44945 1.16471 1.10098 1.69017 1.19860 0.91762 0.80250 1.01390 1.21494 0.94825 0.95567 0.90058 1.22135 0.98915 0.95718 0.99181 1.21585 0.92244 0.97844 0.97660 1.22183 0.92977 0.97566 0.99059 1.98393 1.43385 1.62632 1.98253 1.22853 0.95412 0.90070 0.95972 1.67721 1.01383 1.19756 1.27142 1.23190 0.80909 0.72796 0.87185 1.93402 1.68416 1.53827 1.96205 1.93068 1.81483 1.48346 1.96970 1.92982 1.74435 1.96197 1.55636 0.92059 0.77222 0.77350 0.89702 0.89582 0.83233 0.83476 0.81598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.00 9.50 55.43 0.53 -22.47 16 2 C 0.07 1.69 5.20 -17.82 -0.09 1.60 16 3 Si 0.92 20.05 29.54 -169.99 -5.02 15.03 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.55 -14.06 8.46 -34.44 -0.29 -14.35 16 8 H 0.08 1.83 7.74 -52.49 -0.41 1.42 16 9 C 0.26 6.53 2.21 -69.09 -0.15 6.38 16 10 H 0.09 2.38 7.58 -51.93 -0.39 1.99 16 11 N -0.72 -14.74 4.99 -59.82 -0.30 -15.04 16 12 C 0.70 13.80 8.10 -86.92 -0.70 13.09 16 13 O -0.58 -13.73 14.92 5.29 0.08 -13.65 16 14 N -0.75 -10.79 5.55 -66.41 -0.37 -11.16 16 15 C 0.19 2.41 5.98 -5.19 -0.03 2.38 16 16 C 0.12 1.23 6.15 -82.59 -0.51 0.72 16 17 C -0.14 -1.13 9.72 -39.44 -0.38 -1.51 16 18 C -0.07 -0.48 9.98 -39.25 -0.39 -0.88 16 19 C -0.09 -0.71 6.34 -39.36 -0.25 -0.96 16 20 Cl -0.06 -0.40 28.99 -51.86 -1.50 -1.90 16 21 C 0.12 1.02 10.99 -17.51 -0.19 0.83 16 22 N -0.45 -4.97 10.27 -9.44 -0.10 -5.07 16 23 C 0.42 10.65 2.81 37.16 0.10 10.75 16 24 F -0.14 -3.80 12.91 2.25 0.03 -3.77 16 25 F -0.22 -5.51 15.67 2.25 0.04 -5.47 16 26 F -0.21 -5.17 16.94 2.25 0.04 -5.14 16 27 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.39 6.89 8.55 -40.82 -0.35 6.54 16 29 H 0.39 4.77 8.48 -40.82 -0.35 4.43 16 30 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 31 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.15 0.74 8.06 -52.48 -0.42 0.32 16 34 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 327.56 15.07 4.94 4.94 Total: -1.00 -31.18 327.56 -7.27 -38.46 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -2.74 Total: 7.19 kcal Atomic # 6 Polarization: 20.95 SS G_CDS: -2.89 Total: 18.06 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.24 Total: -53.73 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.08 Total: -13.65 kcal Atomic # 9 Polarization: -14.49 SS G_CDS: 0.10 Total: -14.38 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.50 Total: -1.90 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.18 -7.27 -38.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932911220.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.730 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds