Wall clock time and date at job start Tue Mar 31 2020 20:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34779 * 119.99943 * 154.99835 * 11 9 7 13 13 O 1.21586 * 120.00441 * 0.02562 * 12 11 9 14 14 N 1.34779 * 119.99707 * 179.97438 * 12 11 9 15 15 C 1.46504 * 119.99722 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.46763 * 180.02562 * 15 14 12 17 17 C 1.38715 * 120.40803 * 90.00150 * 16 15 14 18 18 C 1.38558 * 118.43727 * 179.97438 * 17 16 15 19 19 C 1.38398 * 119.15065 * 359.97438 * 18 17 16 20 20 Cl 1.73606 * 119.63472 * 180.02562 * 19 18 17 21 21 N 1.31940 * 120.73143 * 0.02562 * 19 18 17 22 22 C 1.31907 * 121.70646 * 359.72464 * 21 19 18 23 23 C 1.53000 * 109.47355 * 60.00012 * 9 7 2 24 24 F 1.39897 * 109.46935 * 59.99980 * 23 9 7 25 25 F 1.39899 * 109.47307 * 180.02562 * 23 9 7 26 26 F 1.39901 * 109.47163 * 300.00307 * 23 9 7 27 27 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 28 28 H 0.96997 * 120.00208 * 335.00126 * 11 9 7 29 29 H 0.96997 * 120.00445 * 0.02562 * 14 12 11 30 30 H 1.08998 * 109.47182 * 299.99646 * 15 14 12 31 31 H 1.08989 * 109.47422 * 60.00247 * 15 14 12 32 32 H 1.08005 * 120.77608 * 359.95038 * 17 16 15 33 33 H 1.07997 * 120.42454 * 179.97438 * 18 17 16 34 34 H 1.08002 * 119.60861 * 180.28443 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 0.4928 13 8 0.7163 -4.9705 0.9374 14 7 2.7125 -5.8369 0.4923 15 6 2.3143 -7.1410 1.0280 16 6 3.4668 -8.1049 0.9117 17 6 4.3878 -8.2258 1.9420 18 6 5.4312 -9.1250 1.7922 19 6 5.5190 -9.8679 0.6278 20 17 6.8209 -10.9987 0.4271 21 7 4.6242 -9.7262 -0.3315 22 6 3.6158 -8.8833 -0.2199 23 6 0.3709 -2.5799 -1.2494 24 9 1.1748 -2.5056 -2.3920 25 9 -0.3290 -3.7912 -1.2491 26 9 -0.5381 -1.5165 -1.2489 27 1 -0.4850 0.8401 0.0004 28 1 3.0968 -3.4866 -0.3555 29 1 3.6063 -5.7108 0.1373 30 1 2.0355 -7.0334 2.0762 31 1 1.4635 -7.5215 0.4630 32 1 4.2938 -7.6326 2.8397 33 1 6.1666 -9.2446 2.5740 34 1 2.9002 -8.7978 -1.0243 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932918464.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:31 Heat of formation + Delta-G solvation = -135.751630 kcal Electronic energy + Delta-G solvation = -26538.658929 eV Core-core repulsion = 21890.360224 eV Total energy + Delta-G solvation = -4648.298704 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.055 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.33299 -45.98679 -45.60114 -40.76396 -39.32917 -37.07293 -35.42342 -34.44313 -32.93034 -32.57323 -31.50732 -28.45485 -26.19330 -24.55585 -24.21172 -22.54821 -21.54720 -20.28652 -18.53164 -17.83315 -17.18198 -16.97485 -16.83682 -16.60002 -16.27833 -15.39207 -15.27975 -14.90903 -14.67903 -14.58531 -14.27124 -13.69645 -13.54115 -13.34548 -12.91916 -12.79922 -12.48971 -12.38500 -12.27718 -12.13692 -11.99029 -11.96955 -11.81020 -11.67555 -11.18374 -10.88566 -10.81814 -10.42319 -10.39710 -10.02167 -9.74305 -9.68159 -9.26569 -8.93655 -8.73187 -8.21761 -6.25254 -4.49478 0.40366 0.73565 1.42112 2.96265 3.18223 3.23469 3.24857 3.40956 3.70323 4.03979 4.17537 4.26837 4.44557 4.48224 4.56339 4.64369 4.79629 4.92034 5.11540 5.38017 5.44052 5.60476 5.82388 5.84483 5.88550 6.05499 6.21459 6.60985 6.79552 7.15365 7.27796 7.32596 7.59285 7.63829 8.46363 8.58880 9.09380 9.20851 10.66224 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.021252 B = 0.002473 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.213543 B =11319.178096 C =11865.495058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.915 3.085 4 H -0.283 1.283 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.553 4.553 8 H 0.076 0.924 9 C 0.263 3.737 10 H 0.085 0.915 11 N -0.725 5.725 12 C 0.700 3.300 13 O -0.582 6.582 14 N -0.752 5.752 15 C 0.186 3.814 16 C -0.150 4.150 17 C -0.042 4.042 18 C -0.156 4.156 19 C 0.177 3.823 20 Cl -0.033 7.033 21 N -0.479 5.479 22 C 0.139 3.861 23 C 0.415 3.585 24 F -0.210 7.210 25 F -0.217 7.217 26 F -0.137 7.137 27 H 0.269 0.731 28 H 0.395 0.605 29 H 0.394 0.606 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.530 -15.379 3.015 18.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.209 1.209 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.591 4.591 8 H 0.094 0.906 9 C 0.157 3.843 10 H 0.103 0.897 11 N -0.377 5.377 12 C 0.399 3.601 13 O -0.459 6.459 14 N -0.410 5.410 15 C 0.061 3.939 16 C -0.153 4.153 17 C -0.069 4.069 18 C -0.177 4.177 19 C 0.012 3.988 20 Cl -0.005 7.005 21 N -0.190 5.190 22 C -0.018 4.018 23 C 0.359 3.641 24 F -0.192 7.192 25 F -0.199 7.199 26 F -0.119 7.119 27 H 0.080 0.920 28 H 0.228 0.772 29 H 0.227 0.773 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.168 0.832 33 H 0.165 0.835 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 9.434 -15.977 2.639 18.741 hybrid contribution 1.185 1.246 0.006 1.719 sum 10.619 -14.731 2.645 18.351 Atomic orbital electron populations 1.70394 1.05842 1.27503 1.43477 1.25078 0.95157 1.00081 0.94061 0.86270 0.79333 0.81333 0.78885 1.20861 1.19806 1.19842 1.20836 0.93745 0.88125 1.56344 0.90555 1.19602 0.88207 0.84870 0.91625 0.89695 1.45270 1.17436 1.09658 1.65383 1.16039 0.84269 0.80464 0.79291 1.90932 1.19498 1.82835 1.52607 1.45108 1.16480 1.10160 1.69214 1.19844 0.93033 0.80308 1.00670 1.21118 0.98580 0.99826 0.95754 1.21641 0.91462 0.94977 0.98780 1.21873 1.00559 0.97387 0.97883 1.21744 0.91773 0.93545 0.91704 1.98416 1.44954 1.59494 1.97594 1.67086 1.02784 1.19382 1.29713 1.22750 0.93319 0.89362 0.96396 1.23180 0.80932 0.72812 0.87173 1.92985 1.74461 1.96188 1.55577 1.93071 1.81437 1.48387 1.96966 1.93403 1.68419 1.53830 1.96200 0.92031 0.77209 0.77314 0.90300 0.90172 0.83248 0.83490 0.81335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.70 9.50 55.43 0.53 -22.18 16 2 C 0.07 1.67 5.20 -17.82 -0.09 1.58 16 3 Si 0.92 19.75 29.54 -169.99 -5.02 14.73 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.55 -13.81 8.46 -34.44 -0.29 -14.10 16 8 H 0.08 1.79 7.74 -52.49 -0.41 1.38 16 9 C 0.26 6.39 2.21 -69.09 -0.15 6.24 16 10 H 0.09 2.32 7.58 -51.92 -0.39 1.93 16 11 N -0.73 -14.20 4.99 -59.81 -0.30 -14.50 16 12 C 0.70 13.07 8.10 -86.91 -0.70 12.36 16 13 O -0.58 -13.25 14.91 5.29 0.08 -13.17 16 14 N -0.75 -9.76 5.55 -66.42 -0.37 -10.13 16 15 C 0.19 2.00 5.83 -5.19 -0.03 1.97 16 16 C -0.15 -1.30 5.27 -104.48 -0.55 -1.85 16 17 C -0.04 -0.31 9.86 -39.29 -0.39 -0.70 16 18 C -0.16 -1.18 9.88 -39.40 -0.39 -1.57 16 19 C 0.18 1.69 7.27 -17.45 -0.13 1.57 16 20 Cl -0.03 -0.29 29.11 -51.86 -1.51 -1.80 16 21 N -0.48 -5.18 10.34 -10.36 -0.11 -5.28 16 22 C 0.14 1.30 10.86 -17.55 -0.19 1.11 16 23 C 0.42 10.53 2.81 37.16 0.10 10.63 16 24 F -0.21 -5.13 16.94 2.25 0.04 -5.09 16 25 F -0.22 -5.46 15.68 2.25 0.04 -5.43 16 26 F -0.14 -3.77 12.91 2.25 0.03 -3.74 16 27 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.39 6.60 8.55 -40.82 -0.35 6.25 16 29 H 0.39 4.17 8.48 -40.82 -0.35 3.82 16 30 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 31 H 0.08 0.91 8.09 -51.94 -0.42 0.49 16 32 H 0.15 0.84 8.06 -52.48 -0.42 0.42 16 33 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 34 H 0.17 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 327.55 15.07 4.94 4.94 Total: -1.00 -31.15 327.55 -7.21 -38.36 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -2.74 Total: 6.05 kcal Atomic # 6 Polarization: 20.05 SS G_CDS: -2.81 Total: 17.24 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -0.25 Total: -52.09 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.08 Total: -13.17 kcal Atomic # 9 Polarization: -14.36 SS G_CDS: 0.10 Total: -14.26 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.51 Total: -1.80 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.15 -7.21 -38.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932918464.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.392 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds