Wall clock time and date at job start Tue Mar 31 2020 20:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34779 * 119.99943 * 154.99835 * 11 9 7 13 13 O 1.21586 * 120.00441 * 0.02562 * 12 11 9 14 14 N 1.34779 * 119.99707 * 179.97438 * 12 11 9 15 15 C 1.46504 * 119.99722 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.46763 * 180.02562 * 15 14 12 17 17 C 1.38715 * 120.40803 * 90.00150 * 16 15 14 18 18 C 1.38558 * 118.43727 * 179.97438 * 17 16 15 19 19 C 1.38398 * 119.15065 * 359.97438 * 18 17 16 20 20 Cl 1.73606 * 119.63472 * 180.02562 * 19 18 17 21 21 N 1.31940 * 120.73143 * 0.02562 * 19 18 17 22 22 C 1.31907 * 121.70646 * 359.72464 * 21 19 18 23 23 C 1.53000 * 109.47355 * 60.00012 * 9 7 2 24 24 F 1.39897 * 109.46935 * 59.99980 * 23 9 7 25 25 F 1.39899 * 109.47307 * 180.02562 * 23 9 7 26 26 F 1.39901 * 109.47163 * 300.00307 * 23 9 7 27 27 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 28 28 H 0.96997 * 120.00208 * 335.00126 * 11 9 7 29 29 H 0.96997 * 120.00445 * 0.02562 * 14 12 11 30 30 H 1.08998 * 109.47182 * 299.99646 * 15 14 12 31 31 H 1.08989 * 109.47422 * 60.00247 * 15 14 12 32 32 H 1.08005 * 120.77608 * 359.95038 * 17 16 15 33 33 H 1.07997 * 120.42454 * 179.97438 * 18 17 16 34 34 H 1.08002 * 119.60861 * 180.28443 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 0.4928 13 8 0.7163 -4.9705 0.9374 14 7 2.7125 -5.8369 0.4923 15 6 2.3143 -7.1410 1.0280 16 6 3.4668 -8.1049 0.9117 17 6 4.3878 -8.2258 1.9420 18 6 5.4312 -9.1250 1.7922 19 6 5.5190 -9.8679 0.6278 20 17 6.8209 -10.9987 0.4271 21 7 4.6242 -9.7262 -0.3315 22 6 3.6158 -8.8833 -0.2199 23 6 0.3709 -2.5799 -1.2494 24 9 1.1748 -2.5056 -2.3920 25 9 -0.3290 -3.7912 -1.2491 26 9 -0.5381 -1.5165 -1.2489 27 1 -0.4850 0.8401 0.0004 28 1 3.0968 -3.4866 -0.3555 29 1 3.6063 -5.7108 0.1373 30 1 2.0355 -7.0334 2.0762 31 1 1.4635 -7.5215 0.4630 32 1 4.2938 -7.6326 2.8397 33 1 6.1666 -9.2446 2.5740 34 1 2.9002 -8.7978 -1.0243 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932918464.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:30 Heat of formation + Delta-G solvation = -157.150752 kcal Electronic energy + Delta-G solvation = -26539.586864 eV Core-core repulsion = 21890.360224 eV Total energy + Delta-G solvation = -4649.226640 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.055 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.36713 -48.00186 -47.68142 -41.52418 -40.73843 -37.77204 -36.77915 -35.95080 -34.46964 -33.59585 -32.43979 -30.12877 -27.22849 -26.51230 -24.86366 -23.73996 -22.93141 -21.85993 -20.06964 -18.87435 -18.77323 -18.55368 -18.46074 -17.91238 -17.86940 -16.96527 -16.54136 -16.12072 -16.06607 -15.53973 -15.25888 -15.06306 -14.91619 -14.58305 -14.51548 -14.41061 -14.25275 -14.24122 -13.98765 -13.92735 -13.79454 -13.04723 -12.83486 -12.73313 -12.69164 -12.58003 -12.35641 -12.19865 -11.57045 -11.35788 -10.99525 -10.71662 -10.65209 -10.30133 -10.01623 -9.77078 -8.18544 -6.49211 -0.29389 0.10680 0.75083 1.48668 1.51113 1.59018 1.77056 2.16925 2.38722 2.56127 2.61497 2.97479 3.35676 3.41961 3.54228 3.78768 3.83795 3.87598 3.92327 3.95829 4.23818 4.51267 4.66562 4.69709 4.83422 4.93723 5.12780 5.39960 5.45728 5.47803 5.55617 5.68312 6.12377 6.55834 6.60266 7.17326 7.22534 7.67026 8.73838 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.021252 B = 0.002473 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.213543 B =11319.178096 C =11865.495058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.015 3.985 3 Si 0.982 3.018 4 H -0.286 1.286 5 H -0.262 1.262 6 H -0.267 1.267 7 C -0.562 4.562 8 H 0.092 0.908 9 C 0.272 3.728 10 H 0.048 0.952 11 N -0.720 5.720 12 C 0.697 3.303 13 O -0.625 6.625 14 N -0.728 5.728 15 C 0.189 3.811 16 C -0.147 4.147 17 C -0.034 4.034 18 C -0.149 4.149 19 C 0.162 3.838 20 Cl -0.033 7.033 21 N -0.506 5.506 22 C 0.134 3.866 23 C 0.412 3.588 24 F -0.204 7.204 25 F -0.218 7.218 26 F -0.152 7.152 27 H 0.268 0.732 28 H 0.410 0.590 29 H 0.409 0.591 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.173 0.827 33 H 0.173 0.827 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.704 -15.471 3.564 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.190 4.190 3 Si 0.805 3.195 4 H -0.212 1.212 5 H -0.186 1.186 6 H -0.192 1.192 7 C -0.599 4.599 8 H 0.110 0.890 9 C 0.164 3.836 10 H 0.066 0.934 11 N -0.374 5.374 12 C 0.397 3.603 13 O -0.506 6.506 14 N -0.386 5.386 15 C 0.064 3.936 16 C -0.150 4.150 17 C -0.060 4.060 18 C -0.169 4.169 19 C -0.002 4.002 20 Cl -0.005 7.005 21 N -0.217 5.217 22 C -0.024 4.024 23 C 0.355 3.645 24 F -0.186 7.186 25 F -0.200 7.200 26 F -0.133 7.133 27 H 0.078 0.922 28 H 0.246 0.754 29 H 0.245 0.755 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.190 0.810 33 H 0.191 0.809 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 11.685 -16.123 3.178 20.164 hybrid contribution 0.523 1.160 -0.160 1.282 sum 12.208 -14.964 3.018 19.546 Atomic orbital electron populations 1.70530 1.07462 1.28182 1.44656 1.25982 0.95869 1.03616 0.93539 0.85232 0.77998 0.76886 0.79334 1.21156 1.18619 1.19170 1.21201 0.94564 0.88335 1.55752 0.88955 1.19154 0.88370 0.86507 0.89568 0.93397 1.44994 1.17377 1.09182 1.65879 1.16188 0.84318 0.80945 0.78816 1.90906 1.21690 1.83570 1.54397 1.44914 1.16176 1.09546 1.67937 1.19899 0.93831 0.79308 1.00518 1.20849 0.98327 0.99512 0.96269 1.21907 0.90551 0.94613 0.98940 1.22135 1.00830 0.96320 0.97618 1.22030 0.91785 0.94040 0.92315 1.98414 1.44847 1.59564 1.97639 1.67058 1.03606 1.20299 1.30772 1.22879 0.93256 0.89312 0.96924 1.23389 0.80910 0.72361 0.87834 1.92982 1.74184 1.96154 1.55304 1.93062 1.81566 1.48384 1.97010 1.93374 1.69026 1.54592 1.96317 0.92193 0.75412 0.75507 0.90026 0.90765 0.80985 0.80929 0.80701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.84 9.50 21.45 0.20 -47.63 16 2 C 0.02 0.78 5.20 84.66 0.44 1.22 16 3 Si 0.98 39.68 29.54 68.60 2.03 41.71 16 4 H -0.29 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 6 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 7 C -0.56 -27.62 8.46 25.60 0.22 -27.40 16 8 H 0.09 4.14 7.74 -2.91 -0.02 4.11 16 9 C 0.27 13.29 2.21 44.24 0.10 13.39 16 10 H 0.05 2.71 7.58 -2.38 -0.02 2.69 16 11 N -0.72 -27.67 4.99 -461.41 -2.30 -29.97 16 12 C 0.70 25.59 8.10 179.05 1.45 27.04 16 13 O -0.63 -28.71 14.91 -3.99 -0.06 -28.77 16 14 N -0.73 -17.69 5.55 -482.30 -2.68 -20.37 16 15 C 0.19 3.76 5.83 85.63 0.50 4.26 16 16 C -0.15 -2.25 5.27 -19.77 -0.10 -2.35 16 17 C -0.03 -0.40 9.86 22.46 0.22 -0.18 16 18 C -0.15 -1.82 9.88 22.38 0.22 -1.60 16 19 C 0.16 2.83 7.27 84.71 0.62 3.44 16 20 Cl -0.03 -0.54 29.11 -2.72 -0.08 -0.62 16 21 N -0.51 -10.33 10.34 -186.69 -1.93 -12.26 16 22 C 0.13 2.31 10.86 84.66 0.92 3.23 16 23 C 0.41 21.03 2.81 71.98 0.20 21.23 16 24 F -0.20 -9.87 16.94 44.97 0.76 -9.11 16 25 F -0.22 -11.14 15.68 44.97 0.70 -10.43 16 26 F -0.15 -8.49 12.91 44.97 0.58 -7.91 16 27 H 0.27 13.98 8.31 -92.71 -0.77 13.20 16 28 H 0.41 12.99 8.55 -92.71 -0.79 12.20 16 29 H 0.41 7.65 8.48 -92.71 -0.79 6.86 16 30 H 0.08 1.65 8.09 -2.39 -0.02 1.63 16 31 H 0.07 1.62 8.09 -2.39 -0.02 1.60 16 32 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 33 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 34 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -67.34 327.55 1.63 -65.72 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -0.38 Total: 17.36 kcal Atomic # 6 Polarization: 37.50 SS G_CDS: 4.78 Total: 42.28 kcal Atomic # 7 Polarization: -103.52 SS G_CDS: -6.71 Total: -110.23 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.06 Total: -28.77 kcal Atomic # 9 Polarization: -29.50 SS G_CDS: 2.05 Total: -27.46 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -67.34 1.63 -65.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932918464.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.435 kcal (2) G-P(sol) polarization free energy of solvation -67.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds