Wall clock time and date at job start Tue Mar 31 2020 19:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47121 * 94.00487 * 3 2 1 5 5 C 1.36940 * 119.99883 * 88.19763 * 4 3 2 6 6 H 1.07997 * 119.99758 * 173.42430 * 5 4 3 7 7 C 1.38814 * 120.00091 * 353.14636 * 5 4 3 8 8 N 1.31625 * 119.99674 * 335.77520 * 7 5 4 9 9 Si 1.86798 * 120.00230 * 155.77161 * 7 5 4 10 10 H 1.48506 * 109.46835 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.46919 * 119.99755 * 9 7 5 12 12 H 1.48500 * 109.47216 * 240.00276 * 9 7 5 13 13 S 1.65602 * 120.00041 * 268.19311 * 4 3 2 14 14 O 1.42095 * 106.40105 * 23.54403 * 13 4 3 15 15 O 1.42096 * 106.40115 * 156.46212 * 13 4 3 16 16 C 1.76201 * 107.21676 * 270.00131 * 13 4 3 17 17 C 1.35313 * 126.12825 * 269.68357 * 16 13 4 18 18 C 1.39864 * 107.92160 * 179.90654 * 17 16 13 19 19 C 1.50704 * 125.89960 * 180.14372 * 18 17 16 20 20 F 1.39905 * 109.46735 * 185.23718 * 19 18 17 21 21 F 1.39899 * 109.47210 * 305.23982 * 19 18 17 22 22 F 1.39902 * 109.47091 * 65.24147 * 19 18 17 23 23 N 1.30839 * 108.20059 * 0.37084 * 18 17 16 24 24 N 1.34946 * 126.12224 * 90.00562 * 16 13 4 25 25 C 1.46494 * 126.04195 * 359.93545 * 24 16 13 26 26 H 4.40644 * 5.51453 * 180.02562 * 4 1 2 27 27 H 1.08999 * 109.46607 * 334.00438 * 3 2 1 28 28 H 1.08999 * 109.46779 * 214.01102 * 3 2 1 29 29 H 0.97003 * 119.99367 * 179.97438 * 8 7 5 30 30 H 1.08004 * 126.03765 * 0.04655 * 17 16 13 31 31 H 1.09002 * 109.47131 * 90.00467 * 25 24 16 32 32 H 1.08998 * 109.47219 * 210.00390 * 25 24 16 33 33 H 1.08999 * 109.47077 * 330.00221 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0973 -1.3778 5 6 3.3268 1.3258 -1.9514 6 1 3.7858 1.4007 -2.9261 7 6 2.9267 2.4745 -1.2825 8 7 1.9746 2.4102 -0.3759 9 14 3.7395 4.1114 -1.6689 10 1 4.7722 3.9158 -2.7180 11 1 2.7152 5.0699 -2.1559 12 1 4.3769 4.6498 -0.4405 13 16 3.4536 -1.2790 -2.2417 14 8 2.6759 -2.3120 -1.6523 15 8 3.3598 -0.9222 -3.6139 16 6 5.1401 -1.6980 -1.9506 17 6 6.2022 -1.2848 -2.6802 18 6 7.3547 -1.8400 -2.1150 19 6 8.7649 -1.6399 -2.6074 20 9 9.6365 -2.4442 -1.8653 21 9 8.8414 -1.9927 -3.9590 22 9 9.1259 -0.2969 -2.4548 23 7 6.9967 -2.5672 -1.0879 24 7 5.6033 -2.4933 -0.9638 25 6 4.7924 -3.1611 0.0573 26 1 -1.0501 0.0002 0.0000 27 1 3.0097 -0.9229 0.4504 28 1 3.0089 0.8527 0.5748 29 1 1.6953 3.2129 0.0918 30 1 6.1664 -0.6384 -3.5447 31 1 4.4929 -4.1453 -0.3029 32 1 5.3768 -3.2709 0.9708 33 1 3.9043 -2.5640 0.2638 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118816354.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:30 Heat of formation + Delta-G solvation = -57.241556 kcal Electronic energy + Delta-G solvation = -27763.651885 eV Core-core repulsion = 23120.801339 eV Total energy + Delta-G solvation = -4642.850546 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.049 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -50.10846 -47.62885 -47.61017 -41.18300 -36.60976 -36.35712 -34.88239 -33.57282 -32.19455 -31.33335 -30.39160 -28.28386 -26.81816 -25.07938 -24.09739 -21.98476 -21.00469 -18.90330 -18.49958 -18.46643 -18.24056 -18.03645 -16.94175 -16.63931 -16.40662 -15.45994 -15.11506 -14.81377 -14.61404 -14.46090 -14.37427 -14.03627 -13.90416 -13.75667 -13.74735 -13.54785 -13.46699 -12.96815 -12.74352 -12.55531 -12.27272 -11.94162 -11.47038 -11.29015 -11.16149 -11.11333 -11.03494 -10.72583 -10.55272 -10.43219 -9.98412 -9.72244 -9.35782 -9.01317 -8.75039 -8.52038 -6.77512 -4.11252 0.98231 1.45671 2.03718 2.25215 2.88204 3.00859 3.10067 3.15138 3.58846 3.71768 3.90944 4.00240 4.07586 4.28651 4.41306 4.43589 4.71380 4.76441 5.14411 5.27761 5.37149 5.40099 5.50514 5.58730 5.86591 5.94300 6.29658 6.48502 6.75537 6.76880 7.02521 7.10283 7.29614 7.94592 8.38994 8.77506 8.81854 10.15809 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.005112 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.744910 B = 5475.782238 C = 6694.964420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.103 4.103 3 C 0.239 3.761 4 N -0.797 5.797 5 C -0.272 4.272 6 H 0.125 0.875 7 C 0.046 3.954 8 N -0.806 5.806 9 Si 0.910 3.090 10 H -0.260 1.260 11 H -0.276 1.276 12 H -0.275 1.275 13 S 2.565 3.435 14 O -0.974 6.974 15 O -0.954 6.954 16 C -0.457 4.457 17 C -0.137 4.137 18 C -0.045 4.045 19 C 0.560 3.440 20 F -0.170 7.170 21 F -0.168 7.168 22 F -0.166 7.166 23 N -0.231 5.231 24 N -0.294 5.294 25 C 0.086 3.914 26 H 0.201 0.799 27 H 0.060 0.940 28 H 0.109 0.891 29 H 0.279 0.721 30 H 0.169 0.831 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.047 -4.108 2.171 7.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.106 4.106 3 C 0.114 3.886 4 N -0.624 5.624 5 C -0.417 4.417 6 H 0.143 0.857 7 C -0.168 4.168 8 N -0.445 5.445 9 Si 0.734 3.266 10 H -0.184 1.184 11 H -0.202 1.202 12 H -0.200 1.200 13 S 2.653 3.347 14 O -0.963 6.963 15 O -0.942 6.942 16 C -0.655 4.655 17 C -0.168 4.168 18 C -0.209 4.209 19 C 0.504 3.496 20 F -0.151 7.151 21 F -0.149 7.149 22 F -0.148 7.148 23 N -0.059 5.059 24 N -0.079 5.079 25 C -0.055 4.055 26 H 0.218 0.782 27 H 0.078 0.922 28 H 0.127 0.873 29 H 0.090 0.910 30 H 0.186 0.814 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.917 -5.616 2.766 8.614 hybrid contribution 0.842 1.538 -0.493 1.821 sum 6.759 -4.078 2.273 8.215 Atomic orbital electron populations 1.24254 0.95346 1.06549 1.01137 1.22647 0.93811 0.95178 0.98917 1.17927 0.85275 1.00644 0.84768 1.54573 1.63432 1.20940 1.23482 1.19867 1.38162 0.81997 1.01670 0.85743 1.25372 0.95067 1.00165 0.96162 1.70201 1.19980 1.30933 1.23338 0.86139 0.80085 0.81145 0.79222 1.18383 1.20208 1.20038 1.10350 0.75416 0.73459 0.75466 1.93427 1.68120 1.56486 1.78225 1.93442 1.85734 1.82631 1.32386 1.36323 1.29550 1.02892 0.96714 1.21122 0.88105 1.04561 1.02971 1.22070 0.94102 1.04916 0.99829 1.16820 0.83392 0.74261 0.75162 1.93212 1.71654 1.73530 1.76740 1.93229 1.96590 1.91800 1.33270 1.93244 1.92526 1.33631 1.95364 1.77072 0.92301 1.19248 1.17249 1.48203 1.03093 1.34336 1.22233 1.22403 0.94404 0.99270 0.89381 0.78231 0.92183 0.87311 0.90978 0.81381 0.89078 0.88669 0.87501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 72. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.05 19.25 29.55 0.57 -4.48 16 2 C -0.10 -2.20 11.42 -37.12 -0.42 -2.62 16 3 C 0.24 4.81 5.07 -6.83 -0.03 4.78 16 4 N -0.80 -17.31 2.88 -62.77 -0.18 -17.49 16 5 C -0.27 -6.22 9.40 -15.06 -0.14 -6.36 16 6 H 0.13 2.80 7.39 -52.49 -0.39 2.42 16 7 C 0.05 1.01 4.95 -17.43 -0.09 0.93 16 8 N -0.81 -18.14 8.99 55.49 0.50 -17.64 16 9 Si 0.91 17.33 29.62 -169.99 -5.03 12.29 16 10 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 11 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 12 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 13 S 2.56 54.22 5.56 -107.50 -0.60 53.62 16 14 O -0.97 -20.78 14.82 -57.18 -0.85 -21.63 16 15 O -0.95 -22.63 16.72 -57.18 -0.96 -23.59 16 16 C -0.46 -8.78 7.00 -17.22 -0.12 -8.90 16 17 C -0.14 -2.54 10.47 -40.02 -0.42 -2.96 16 18 C -0.04 -0.79 6.51 -82.41 -0.54 -1.32 16 19 C 0.56 8.58 3.51 36.01 0.13 8.70 16 20 F -0.17 -2.55 17.14 2.25 0.04 -2.51 16 21 F -0.17 -2.46 17.30 2.25 0.04 -2.42 16 22 F -0.17 -2.50 17.30 2.25 0.04 -2.46 16 23 N -0.23 -4.15 12.35 33.67 0.42 -3.74 16 24 N -0.29 -5.18 4.01 -67.26 -0.27 -5.45 16 25 C 0.09 1.17 10.54 59.84 0.63 1.80 16 26 H 0.20 3.20 7.80 -54.09 -0.42 2.78 16 27 H 0.06 1.02 5.77 -51.93 -0.30 0.72 16 28 H 0.11 2.22 6.28 -51.93 -0.33 1.90 16 29 H 0.28 5.90 8.31 -40.82 -0.34 5.56 16 30 H 0.17 2.85 8.06 -52.48 -0.42 2.43 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.11 1.47 4.72 -51.93 -0.25 1.22 16 LS Contribution 320.73 15.07 4.83 4.83 Total: -1.00 -28.04 320.73 -4.54 -32.58 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -2.08 Total: 4.03 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -0.44 Total: -10.44 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.46 Total: -44.31 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -1.80 Total: -45.22 kcal Atomic # 9 Polarization: -7.50 SS G_CDS: 0.12 Total: -7.38 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.29 kcal Atomic # 16 Polarization: 54.22 SS G_CDS: -0.60 Total: 53.62 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.04 -4.54 -32.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118816354.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.661 kcal (2) G-P(sol) polarization free energy of solvation -28.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds