Wall clock time and date at job start Tue Mar 31 2020 19:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47121 * 94.00487 * 3 2 1 5 5 C 1.36940 * 119.99883 * 88.19763 * 4 3 2 6 6 H 1.07997 * 119.99758 * 173.42430 * 5 4 3 7 7 C 1.38814 * 120.00091 * 353.14636 * 5 4 3 8 8 N 1.31625 * 119.99674 * 335.77520 * 7 5 4 9 9 Si 1.86798 * 120.00230 * 155.77161 * 7 5 4 10 10 H 1.48506 * 109.46835 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.46919 * 119.99755 * 9 7 5 12 12 H 1.48500 * 109.47216 * 240.00276 * 9 7 5 13 13 S 1.65602 * 120.00041 * 268.19311 * 4 3 2 14 14 O 1.42095 * 106.40105 * 23.54403 * 13 4 3 15 15 O 1.42096 * 106.40115 * 156.46212 * 13 4 3 16 16 C 1.76201 * 107.21676 * 270.00131 * 13 4 3 17 17 C 1.35313 * 126.12825 * 269.68357 * 16 13 4 18 18 C 1.39864 * 107.92160 * 179.90654 * 17 16 13 19 19 C 1.50704 * 125.89960 * 180.14372 * 18 17 16 20 20 F 1.39905 * 109.46735 * 185.23718 * 19 18 17 21 21 F 1.39899 * 109.47210 * 305.23982 * 19 18 17 22 22 F 1.39902 * 109.47091 * 65.24147 * 19 18 17 23 23 N 1.30839 * 108.20059 * 0.37084 * 18 17 16 24 24 N 1.34946 * 126.12224 * 90.00562 * 16 13 4 25 25 C 1.46494 * 126.04195 * 359.93545 * 24 16 13 26 26 H 4.40644 * 5.51453 * 180.02562 * 4 1 2 27 27 H 1.08999 * 109.46607 * 334.00438 * 3 2 1 28 28 H 1.08999 * 109.46779 * 214.01102 * 3 2 1 29 29 H 0.97003 * 119.99367 * 179.97438 * 8 7 5 30 30 H 1.08004 * 126.03765 * 0.04655 * 17 16 13 31 31 H 1.09002 * 109.47131 * 90.00467 * 25 24 16 32 32 H 1.08998 * 109.47219 * 210.00390 * 25 24 16 33 33 H 1.08999 * 109.47077 * 330.00221 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0973 -1.3778 5 6 3.3268 1.3258 -1.9514 6 1 3.7858 1.4007 -2.9261 7 6 2.9267 2.4745 -1.2825 8 7 1.9746 2.4102 -0.3759 9 14 3.7395 4.1114 -1.6689 10 1 4.7722 3.9158 -2.7180 11 1 2.7152 5.0699 -2.1559 12 1 4.3769 4.6498 -0.4405 13 16 3.4536 -1.2790 -2.2417 14 8 2.6759 -2.3120 -1.6523 15 8 3.3598 -0.9222 -3.6139 16 6 5.1401 -1.6980 -1.9506 17 6 6.2022 -1.2848 -2.6802 18 6 7.3547 -1.8400 -2.1150 19 6 8.7649 -1.6399 -2.6074 20 9 9.6365 -2.4442 -1.8653 21 9 8.8414 -1.9927 -3.9590 22 9 9.1259 -0.2969 -2.4548 23 7 6.9967 -2.5672 -1.0879 24 7 5.6033 -2.4933 -0.9638 25 6 4.7924 -3.1611 0.0573 26 1 -1.0501 0.0002 0.0000 27 1 3.0097 -0.9229 0.4504 28 1 3.0089 0.8527 0.5748 29 1 1.6953 3.2129 0.0918 30 1 6.1664 -0.6384 -3.5447 31 1 4.4929 -4.1453 -0.3029 32 1 5.3768 -3.2709 0.9708 33 1 3.9043 -2.5640 0.2638 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118816354.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:28 Heat of formation + Delta-G solvation = -75.114766 kcal Electronic energy + Delta-G solvation = -27764.426925 eV Core-core repulsion = 23120.801339 eV Total energy + Delta-G solvation = -4643.625586 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.049 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -51.31906 -48.82744 -48.81873 -42.65411 -38.33751 -38.08920 -36.82300 -34.93781 -33.72268 -32.91161 -31.91661 -29.53970 -28.36825 -26.35900 -25.72953 -23.58866 -22.37313 -20.53447 -20.00827 -19.70775 -19.61168 -19.47052 -18.64560 -18.17318 -17.77894 -16.86309 -16.73719 -16.46608 -16.19878 -15.66213 -15.59569 -15.40357 -15.23277 -15.12082 -15.02006 -14.95265 -14.93470 -14.42214 -13.98031 -13.93710 -13.62373 -13.45969 -13.23266 -12.94270 -12.85412 -12.82974 -12.70883 -12.34962 -12.19618 -11.98220 -11.57660 -11.21459 -10.94589 -10.57954 -10.19709 -10.10230 -8.27930 -5.82254 -0.72750 -0.07618 0.71167 0.76276 1.48241 1.54076 1.59598 1.64293 1.96391 2.36841 2.41749 2.49946 2.60739 2.71096 2.78652 3.07252 3.18706 3.33886 3.61044 3.90722 3.94608 4.17110 4.25976 4.30911 4.37304 4.57365 4.85662 4.95140 5.23082 5.34812 5.49920 5.59076 5.83285 6.34625 6.84027 7.21080 7.25965 8.67769 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.005112 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.744910 B = 5475.782238 C = 6694.964420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.142 4.142 3 C 0.242 3.758 4 N -0.823 5.823 5 C -0.333 4.333 6 H 0.113 0.887 7 C 0.018 3.982 8 N -0.852 5.852 9 Si 0.961 3.039 10 H -0.262 1.262 11 H -0.284 1.284 12 H -0.274 1.274 13 S 2.646 3.354 14 O -0.970 6.970 15 O -0.974 6.974 16 C -0.479 4.479 17 C -0.135 4.135 18 C -0.051 4.051 19 C 0.570 3.430 20 F -0.165 7.165 21 F -0.162 7.162 22 F -0.163 7.163 23 N -0.224 5.224 24 N -0.288 5.288 25 C 0.067 3.933 26 H 0.231 0.769 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.274 0.726 30 H 0.180 0.820 31 H 0.110 0.890 32 H 0.129 0.871 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.288 -6.099 2.313 9.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.145 4.145 3 C 0.117 3.883 4 N -0.654 5.654 5 C -0.469 4.469 6 H 0.131 0.869 7 C -0.191 4.191 8 N -0.490 5.490 9 Si 0.785 3.215 10 H -0.186 1.186 11 H -0.210 1.210 12 H -0.200 1.200 13 S 2.732 3.268 14 O -0.959 6.959 15 O -0.963 6.963 16 C -0.683 4.683 17 C -0.166 4.166 18 C -0.215 4.215 19 C 0.513 3.487 20 F -0.147 7.147 21 F -0.143 7.143 22 F -0.145 7.145 23 N -0.053 5.053 24 N -0.073 5.073 25 C -0.072 4.072 26 H 0.248 0.752 27 H 0.106 0.894 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.197 0.803 31 H 0.128 0.872 32 H 0.147 0.853 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.095 -7.444 2.923 10.691 hybrid contribution 0.613 1.617 -0.624 1.839 sum 7.708 -5.827 2.299 9.932 Atomic orbital electron populations 1.25130 0.96450 1.05621 0.99952 1.23300 0.94945 0.96150 1.00057 1.18049 0.84903 1.01675 0.83638 1.53601 1.68193 1.19763 1.23840 1.19636 1.41591 0.82438 1.03260 0.86927 1.25738 0.95147 1.01642 0.96525 1.70269 1.22136 1.30739 1.25894 0.85384 0.78900 0.78537 0.78677 1.18570 1.20977 1.19960 1.05284 0.74701 0.72727 0.74068 1.93475 1.67823 1.56302 1.78284 1.93465 1.86233 1.83392 1.33177 1.35278 1.27843 1.05957 0.99188 1.21398 0.88333 1.03848 1.03027 1.22340 0.95014 1.04585 0.99576 1.16535 0.82422 0.74423 0.75315 1.93226 1.71302 1.73431 1.76702 1.93247 1.96488 1.91763 1.32791 1.93258 1.92376 1.33448 1.95370 1.77069 0.92200 1.18956 1.17049 1.48569 1.03273 1.33543 1.21898 1.22879 0.94572 0.99679 0.90037 0.75240 0.89438 0.87971 0.91562 0.80279 0.87171 0.85268 0.87718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 61. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.96 19.25 74.32 1.43 -8.53 16 2 C -0.14 -6.09 11.42 31.13 0.36 -5.73 16 3 C 0.24 9.79 5.07 84.57 0.43 10.22 16 4 N -0.82 -35.89 2.88 -352.52 -1.01 -36.90 16 5 C -0.33 -15.73 9.40 84.03 0.79 -14.94 16 6 H 0.11 5.31 7.39 -2.91 -0.02 5.29 16 7 C 0.02 0.81 4.95 84.86 0.42 1.23 16 8 N -0.85 -40.16 8.99 21.65 0.19 -39.96 16 9 Si 0.96 37.24 29.62 68.60 2.03 39.27 16 10 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 11 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 12 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 13 S 2.65 107.95 5.56 -56.49 -0.31 107.64 16 14 O -0.97 -39.00 14.82 -128.00 -1.90 -40.90 16 15 O -0.97 -45.21 16.72 -128.00 -2.14 -47.35 16 16 C -0.48 -17.28 7.00 83.54 0.58 -16.70 16 17 C -0.14 -4.70 10.47 21.99 0.23 -4.47 16 18 C -0.05 -1.66 6.51 43.10 0.28 -1.38 16 19 C 0.57 15.90 3.51 71.24 0.25 16.15 16 20 F -0.17 -4.48 17.14 44.97 0.77 -3.71 16 21 F -0.16 -4.30 17.30 44.97 0.78 -3.53 16 22 F -0.16 -4.51 17.30 44.97 0.78 -3.74 16 23 N -0.22 -7.31 12.35 -47.38 -0.59 -7.90 16 24 N -0.29 -9.19 4.01 -366.72 -1.47 -10.66 16 25 C 0.07 1.57 10.54 127.77 1.35 2.91 16 26 H 0.23 7.06 7.80 -4.41 -0.03 7.02 16 27 H 0.09 2.88 5.77 -2.39 -0.01 2.86 16 28 H 0.10 4.32 6.28 -2.39 -0.02 4.30 16 29 H 0.27 12.27 8.31 -92.71 -0.77 11.50 16 30 H 0.18 5.74 8.06 -2.91 -0.02 5.72 16 31 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.10 2.53 4.72 -2.39 -0.01 2.52 16 Total: -1.00 -59.13 320.73 4.44 -54.69 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.19 Total: 14.27 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: 6.12 Total: -21.23 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -2.88 Total: -95.42 kcal Atomic # 8 Polarization: -84.21 SS G_CDS: -4.04 Total: -88.25 kcal Atomic # 9 Polarization: -13.30 SS G_CDS: 2.33 Total: -10.97 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 2.03 Total: 39.27 kcal Atomic # 16 Polarization: 107.95 SS G_CDS: -0.31 Total: 107.64 kcal Total: -59.13 4.44 -54.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118816354.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.426 kcal (2) G-P(sol) polarization free energy of solvation -59.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds