Wall clock time and date at job start Tue Mar 31 2020 20:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40365 * 126.64992 * 2 1 4 4 C 1.35131 * 107.11522 * 179.74059 * 3 2 1 5 5 C 1.50705 * 125.61257 * 180.02562 * 4 3 2 6 6 F 1.39902 * 109.46768 * 210.00070 * 5 4 3 7 7 F 1.39907 * 109.47024 * 329.99575 * 5 4 3 8 8 O 1.33926 * 108.76732 * 359.97438 * 4 3 2 9 9 C 1.34909 * 109.38579 * 0.02562 * 8 4 3 10 10 C 1.46660 * 125.98583 * 180.02562 * 9 8 4 11 11 O 1.21693 * 119.99909 * 179.97438 * 10 9 8 12 12 N 1.34780 * 119.99967 * 359.95867 * 10 9 8 13 13 S 1.65599 * 119.99969 * 180.02562 * 12 10 9 14 14 O 1.42099 * 104.27851 * 181.06977 * 13 12 10 15 15 O 1.42102 * 104.27596 * 308.92798 * 13 12 10 16 16 C 1.81405 * 104.44907 * 64.99712 * 13 12 10 17 17 C 1.52999 * 109.46767 * 179.97438 * 16 13 12 18 18 C 1.50701 * 109.46860 * 179.97438 * 17 16 13 19 19 H 1.08004 * 120.00193 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00118 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00286 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00168 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47257 * 89.99662 * 22 20 18 24 24 H 1.48494 * 109.47570 * 210.00052 * 22 20 18 25 25 H 1.48508 * 109.46784 * 330.00304 * 22 20 18 26 26 H 1.09002 * 109.46772 * 90.02180 * 1 2 3 27 27 H 1.08998 * 109.46979 * 210.01991 * 1 2 3 28 28 H 1.08996 * 109.46430 * 330.02520 * 1 2 3 29 29 H 1.08001 * 126.43990 * 359.76044 * 3 2 1 30 30 H 1.08993 * 109.47321 * 89.99731 * 5 4 3 31 31 H 0.97003 * 120.00026 * 359.97438 * 12 10 9 32 32 H 1.08997 * 109.47384 * 299.99756 * 16 13 12 33 33 H 1.08998 * 109.46820 * 60.00390 * 16 13 12 34 34 H 1.08997 * 109.47685 * 300.00187 * 17 16 13 35 35 H 1.09003 * 109.47371 * 60.00803 * 17 16 13 36 36 H 0.96997 * 120.00459 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3449 1.1261 0.0000 4 6 3.6184 0.6743 0.0058 5 6 4.8551 1.5355 0.0086 6 9 5.8930 0.8631 -0.6455 7 9 4.5875 2.7379 -0.6548 8 8 3.6005 -0.6648 0.0100 9 6 2.3220 -1.0955 0.0063 10 6 1.8842 -2.4953 0.0095 11 8 0.6967 -2.7614 0.0061 12 7 2.7971 -3.4869 0.0159 13 16 2.3027 -5.0674 0.0188 14 8 3.5121 -5.8127 0.0513 15 8 1.3683 -5.1402 1.0869 16 6 1.4649 -5.2826 -1.5757 17 6 0.9570 -6.7209 -1.6948 18 6 0.2604 -6.8995 -3.0191 19 1 0.1877 -6.0702 -3.7073 20 6 -0.2840 -8.1216 -3.3524 21 7 -0.8915 -8.2776 -4.5084 22 14 -0.1589 -9.5557 -2.1621 23 1 -1.3388 -9.5551 -1.2605 24 1 -0.1190 -10.8296 -2.9241 25 1 1.0806 -9.4225 -1.3551 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 -0.8898 0.5141 28 1 -0.3632 0.8902 0.5134 29 1 2.0308 2.1595 -0.0036 30 1 5.1494 1.7456 1.0368 31 1 3.7436 -3.2747 0.0180 32 1 0.6231 -4.5931 -1.6398 33 1 2.1656 -5.0769 -2.3849 34 1 1.7990 -7.4101 -1.6308 35 1 0.2564 -6.9270 -0.8856 36 1 -1.2749 -9.1373 -4.7427 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118912141.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:51 Heat of formation + Delta-G solvation = -221.992962 kcal Electronic energy + Delta-G solvation = -26751.059728 eV Core-core repulsion = 22192.232579 eV Total energy + Delta-G solvation = -4558.827149 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.067 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.16494 -48.20204 -44.10531 -41.19548 -38.40738 -37.35735 -36.17993 -35.94061 -35.21290 -33.54298 -32.78668 -28.99507 -28.12406 -27.88391 -24.24031 -23.23951 -22.82478 -21.56999 -20.81129 -19.89861 -19.52303 -18.86961 -18.72371 -18.45118 -18.13309 -17.72861 -17.23118 -16.96861 -16.54139 -16.33106 -16.03918 -15.38183 -15.31417 -14.94983 -14.84804 -14.70981 -14.50520 -14.15432 -14.05383 -13.93778 -13.84435 -13.76625 -13.48536 -13.37619 -13.27186 -13.12542 -13.07405 -12.47899 -12.42270 -12.23468 -11.99610 -11.78653 -11.71184 -11.27365 -10.94038 -10.85520 -10.03150 -8.37481 -6.44309 -1.17082 -0.58164 0.82064 0.94136 1.23467 1.33387 1.34097 1.44403 1.51078 2.29273 2.37998 2.48004 2.88424 2.96282 3.02004 3.16005 3.46773 3.54367 3.74754 3.80871 3.84185 3.93733 4.07550 4.20274 4.43975 4.49099 4.74098 4.85937 4.98184 4.99277 5.01577 5.17557 5.32334 5.43733 5.60878 6.05291 6.14560 6.61367 7.19902 8.78174 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.019682 B = 0.002790 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.303817 B =10034.659306 C =10301.475795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.069 4.069 3 C -0.165 4.165 4 C -0.058 4.058 5 C 0.363 3.637 6 F -0.202 7.202 7 F -0.185 7.185 8 O -0.147 6.147 9 C -0.099 4.099 10 C 0.627 3.373 11 O -0.492 6.492 12 N -1.036 6.036 13 S 2.602 3.398 14 O -0.958 6.958 15 O -0.962 6.962 16 C -0.578 4.578 17 C -0.015 4.015 18 C -0.530 4.530 19 H 0.047 0.953 20 C 0.014 3.986 21 N -0.940 5.940 22 Si 0.927 3.073 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.244 1.244 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.199 0.801 30 H 0.196 0.804 31 H 0.449 0.551 32 H 0.138 0.862 33 H 0.150 0.850 34 H 0.042 0.958 35 H 0.034 0.966 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.035 24.866 12.780 30.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.072 4.072 3 C -0.184 4.184 4 C -0.112 4.112 5 C 0.310 3.690 6 F -0.183 7.183 7 F -0.166 7.166 8 O -0.043 6.043 9 C -0.152 4.152 10 C 0.416 3.584 11 O -0.366 6.366 12 N -0.801 5.801 13 S 2.700 3.300 14 O -0.949 6.949 15 O -0.952 6.952 16 C -0.711 4.711 17 C -0.054 4.054 18 C -0.569 4.569 19 H 0.066 0.934 20 C -0.185 4.185 21 N -0.579 5.579 22 Si 0.749 3.251 23 H -0.186 1.186 24 H -0.198 1.198 25 H -0.168 1.168 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.121 0.879 29 H 0.217 0.783 30 H 0.212 0.788 31 H 0.289 0.711 32 H 0.156 0.844 33 H 0.168 0.832 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.537 23.769 13.381 29.617 hybrid contribution 0.001 -0.505 -0.838 0.978 sum 11.538 23.264 12.543 28.839 Atomic orbital electron populations 1.20629 0.86656 1.04805 1.04088 1.21103 0.98833 0.90657 0.96578 1.21881 0.89780 1.01752 1.04982 1.23844 0.98818 0.81609 1.06893 1.20217 0.77722 0.74909 0.96146 1.93059 1.59849 1.80925 1.84498 1.93077 1.94009 1.45373 1.84147 1.83972 1.27578 1.21624 1.71146 1.21387 0.82326 0.93626 1.17890 1.16557 0.84791 0.83276 0.73787 1.91067 1.15638 1.82588 1.47290 1.54875 1.19434 1.25697 1.80052 1.05461 0.74444 0.72152 0.77898 1.93594 1.45290 1.68158 1.87828 1.93577 1.65117 1.84294 1.52260 1.30178 1.14057 1.07294 1.19526 1.19398 0.97510 0.90218 0.98277 1.21119 1.36345 0.97807 1.01632 0.93433 1.25893 0.93994 1.01678 0.96932 1.70008 1.38305 1.26071 1.23545 0.85992 0.80673 0.78737 0.79658 1.18649 1.19782 1.16782 0.89566 0.90950 0.87851 0.78350 0.78777 0.71079 0.84406 0.83239 0.93936 0.94817 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 9.82 71.24 0.70 -1.06 16 2 C -0.07 -1.25 6.20 -19.74 -0.12 -1.37 16 3 C -0.17 -2.02 10.38 22.07 0.23 -1.79 16 4 C -0.06 -0.76 6.93 24.97 0.17 -0.59 16 5 C 0.36 2.68 5.82 71.24 0.41 3.09 16 6 F -0.20 -2.72 17.31 44.97 0.78 -1.94 16 7 F -0.19 -1.77 17.02 44.97 0.77 -1.01 16 8 O -0.15 -2.68 10.38 -4.94 -0.05 -2.73 16 9 C -0.10 -2.15 7.13 24.07 0.17 -1.98 16 10 C 0.63 16.91 7.52 86.44 0.65 17.56 16 11 O -0.49 -16.06 12.83 12.05 0.15 -15.90 16 12 N -1.04 -25.88 5.60 -176.40 -0.99 -26.87 16 13 S 2.60 86.89 5.11 -56.49 -0.29 86.60 16 14 O -0.96 -34.17 18.08 -127.65 -2.31 -36.48 16 15 O -0.96 -38.32 17.04 -120.72 -2.06 -40.38 16 16 C -0.58 -21.62 5.82 71.98 0.42 -21.20 16 17 C -0.01 -0.70 4.05 29.85 0.12 -0.58 16 18 C -0.53 -30.35 9.66 25.60 0.25 -30.10 16 19 H 0.05 2.92 7.99 -2.91 -0.02 2.90 16 20 C 0.01 0.80 5.47 84.65 0.46 1.26 16 21 N -0.94 -58.22 13.96 21.45 0.30 -57.92 16 22 Si 0.93 43.78 27.47 68.60 1.88 45.66 16 23 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 25 H -0.24 -10.76 6.54 99.48 0.65 -10.11 16 26 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.07 1.56 6.44 -2.39 -0.02 1.55 16 28 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.20 1.14 8.06 -2.91 -0.02 1.11 16 30 H 0.20 -0.46 8.14 -2.39 -0.02 -0.48 16 31 H 0.45 8.07 8.55 -96.74 -0.83 7.24 16 32 H 0.14 5.16 7.19 -2.39 -0.02 5.14 16 33 H 0.15 4.87 8.14 -2.39 -0.02 4.85 16 34 H 0.04 1.93 7.20 -2.39 -0.02 1.91 16 35 H 0.03 1.57 7.57 -2.39 -0.02 1.55 16 36 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -79.64 338.20 1.93 -77.71 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.28 Total: 10.01 kcal Atomic # 6 Polarization: -40.23 SS G_CDS: 3.47 Total: -36.76 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -0.69 Total: -84.79 kcal Atomic # 8 Polarization: -91.22 SS G_CDS: -4.26 Total: -95.48 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 1.54 Total: -2.95 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.66 kcal Atomic # 16 Polarization: 86.89 SS G_CDS: -0.29 Total: 86.60 kcal Total: -79.64 1.93 -77.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118912141.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.287 kcal (2) G-P(sol) polarization free energy of solvation -79.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds