Wall clock time and date at job start Tue Mar 31 2020 19:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00227 * 2 1 4 4 H 1.48497 * 109.47108 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47035 * 299.99807 * 3 2 1 6 6 H 1.48502 * 109.47055 * 59.99661 * 3 2 1 7 7 C 1.37882 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00035 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47424 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99470 * 0.02562 * 10 9 7 12 12 N 1.34776 * 120.00412 * 180.02562 * 10 9 7 13 13 C 1.39917 * 120.00076 * 174.73008 * 12 10 9 14 14 C 1.38891 * 120.07284 * 326.55350 * 13 12 10 15 15 C 1.38097 * 119.92952 * 179.67866 * 14 13 12 16 16 C 1.38308 * 120.06683 * 0.62029 * 15 14 13 17 17 C 1.38251 * 120.14059 * 359.67515 * 16 15 14 18 18 S 1.76202 * 119.96035 * 180.02562 * 17 16 15 19 19 O 1.42099 * 104.27653 * 26.05019 * 18 17 16 20 20 O 1.42106 * 104.27712 * 153.90979 * 18 17 16 21 21 C 1.81400 * 104.45119 * 269.97791 * 18 17 16 22 22 F 1.39906 * 109.47195 * 60.00076 * 21 18 17 23 23 F 1.39898 * 109.47597 * 179.97438 * 21 18 17 24 24 F 1.39895 * 109.47472 * 300.00477 * 21 18 17 25 25 C 1.38135 * 120.07661 * 0.02562 * 17 16 15 26 26 H 0.97004 * 119.99847 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47000 * 300.00167 * 9 7 2 28 28 H 1.09000 * 109.47242 * 59.99645 * 9 7 2 29 29 H 0.97006 * 119.99424 * 354.73050 * 12 10 9 30 30 H 1.08002 * 120.03544 * 359.97438 * 14 13 12 31 31 H 1.07993 * 119.96009 * 180.29592 * 15 14 13 32 32 H 1.08005 * 119.92261 * 179.70015 * 16 15 14 33 33 H 1.08003 * 120.03420 * 180.02562 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 8 3.4227 -3.4230 0.0010 12 7 1.7810 -4.9154 0.0000 13 6 2.6854 -5.9771 -0.1113 14 6 3.8385 -5.8323 -0.8719 15 6 4.7324 -6.8799 -0.9743 16 6 4.4741 -8.0767 -0.3309 17 6 3.3243 -8.2260 0.4220 18 16 3.0003 -9.7525 1.2403 19 8 4.2868 -10.3199 1.4456 20 8 2.1743 -9.3926 2.3392 21 6 2.0616 -10.7245 0.0301 22 9 2.8329 -10.9037 -1.1233 23 9 1.7462 -11.9725 0.5780 24 9 0.8823 -10.0473 -0.2982 25 6 2.4291 -7.1799 0.5335 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5567 0.8903 28 1 0.6247 -2.5571 -0.8896 29 1 0.8306 -5.0937 0.0768 30 1 4.0381 -4.8998 -1.3789 31 1 5.6315 -6.7663 -1.5617 32 1 5.1725 -8.8961 -0.4165 33 1 1.5312 -7.2971 1.1222 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143201322.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:59 Heat of formation + Delta-G solvation = -204.347917 kcal Electronic energy + Delta-G solvation = -26449.677060 eV Core-core repulsion = 21768.154752 eV Total energy + Delta-G solvation = -4681.522307 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.043 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -50.75262 -48.43899 -48.38854 -40.34170 -38.34230 -38.12205 -36.98445 -34.55023 -33.11635 -31.61672 -30.34625 -28.57961 -27.58417 -24.31728 -23.72739 -22.49825 -20.95701 -20.28029 -19.35781 -19.29643 -19.12598 -18.24763 -16.85000 -16.68585 -16.29360 -16.20986 -15.62828 -15.39977 -15.23433 -15.18823 -15.13801 -14.74950 -14.56957 -14.45206 -14.44779 -14.25238 -14.06899 -13.28278 -13.14597 -13.03558 -12.97217 -12.65459 -12.27081 -12.03700 -11.83164 -11.51193 -11.33156 -10.89072 -10.82182 -10.40476 -10.10566 -9.61975 -9.42934 -9.01138 -8.57596 -8.22246 -6.19614 -4.20681 -1.51273 0.48328 1.04348 1.65381 2.33481 2.67057 2.70589 3.09403 3.16500 3.25415 3.30473 3.33936 3.42639 3.58052 3.61713 4.37150 4.51371 4.70232 4.94758 5.09822 5.15667 5.19360 5.45656 5.61659 5.88020 6.10085 6.10660 6.34053 6.84652 6.97865 7.09954 7.63404 7.83244 8.12238 8.75489 8.90178 9.45352 10.92491 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.027106 B = 0.002588 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.740166 B =10814.548992 C =11165.428664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.903 3.097 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.514 4.514 8 H 0.077 0.923 9 C 0.007 3.993 10 C 0.516 3.484 11 O -0.521 6.521 12 N -0.690 5.690 13 C 0.153 3.847 14 C -0.054 4.054 15 C -0.115 4.115 16 C -0.038 4.038 17 C -0.636 4.636 18 S 2.490 3.510 19 O -0.861 6.861 20 O -0.858 6.858 21 C -0.021 4.021 22 F -0.157 7.157 23 F -0.163 7.163 24 F -0.155 7.155 25 C -0.054 4.054 26 H 0.263 0.737 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.413 0.587 30 H 0.151 0.849 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.776 -22.335 -1.313 22.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.553 4.553 8 H 0.095 0.905 9 C -0.032 4.032 10 C 0.308 3.692 11 O -0.395 6.395 12 N -0.337 5.337 13 C 0.056 3.944 14 C -0.075 4.075 15 C -0.135 4.135 16 C -0.059 4.059 17 C -0.730 4.730 18 S 2.654 3.346 19 O -0.858 6.858 20 O -0.856 6.856 21 C -0.146 4.146 22 F -0.138 7.138 23 F -0.144 7.144 24 F -0.137 7.137 25 C -0.076 4.076 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.249 0.751 30 H 0.169 0.831 31 H 0.159 0.841 32 H 0.163 0.837 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.562 -22.349 -0.609 22.818 hybrid contribution -0.681 0.784 -1.010 1.449 sum 3.881 -21.565 -1.619 21.971 Atomic orbital electron populations 1.69955 1.06077 1.27114 1.50551 1.25007 0.94935 0.99616 0.94904 0.86347 0.80269 0.82773 0.77595 1.19440 1.20918 1.20895 1.21147 0.94276 0.88857 1.50978 0.90507 1.19310 0.93970 0.89901 1.00067 1.22463 0.91596 0.82785 0.72396 1.90564 1.17892 1.84055 1.46946 1.44277 1.09894 1.05127 1.74388 1.17910 0.92845 0.88354 0.95313 1.21800 0.92446 0.99627 0.93609 1.21208 0.99962 0.92307 1.00037 1.20876 0.93735 0.98949 0.92317 1.29285 1.05991 1.16843 1.20882 1.07151 0.75810 0.76150 0.75473 1.93670 1.33146 1.78131 1.80862 1.93686 1.69604 1.80363 1.41918 1.35212 0.90313 0.90603 0.98474 1.93276 1.73206 1.95632 1.51733 1.93263 1.93533 1.43247 1.84391 1.93286 1.48522 1.78246 1.93641 1.20653 0.98920 0.92124 0.95927 0.92739 0.92844 0.92758 0.75103 0.83127 0.84125 0.83700 0.83347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.09 13.29 55.43 0.74 -24.36 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -13.95 8.92 -34.44 -0.31 -14.26 16 8 H 0.08 2.17 6.75 -52.49 -0.35 1.82 16 9 C 0.01 0.15 5.46 -29.04 -0.16 -0.01 16 10 C 0.52 10.41 7.56 -10.99 -0.08 10.32 16 11 O -0.52 -11.94 13.16 5.55 0.07 -11.86 16 12 N -0.69 -10.49 5.34 -9.86 -0.05 -10.54 16 13 C 0.15 2.15 6.28 -83.70 -0.53 1.63 16 14 C -0.05 -0.75 8.66 -39.39 -0.34 -1.09 16 15 C -0.12 -1.24 10.04 -39.61 -0.40 -1.64 16 16 C -0.04 -0.38 9.47 -39.55 -0.37 -0.75 16 17 C -0.64 -6.67 5.64 -39.61 -0.22 -6.90 16 18 S 2.49 23.28 5.19 -107.50 -0.56 22.73 16 19 O -0.86 -9.01 17.12 -57.54 -0.99 -9.99 16 20 O -0.86 -9.55 17.12 -57.54 -0.99 -10.53 16 21 C -0.02 -0.19 3.55 101.05 0.36 0.17 16 22 F -0.16 -1.45 17.35 2.25 0.04 -1.41 16 23 F -0.16 -1.55 17.36 2.25 0.04 -1.51 16 24 F -0.16 -1.50 17.35 2.25 0.04 -1.46 16 25 C -0.05 -0.63 9.39 -39.39 -0.37 -1.00 16 26 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.41 4.95 8.82 -40.82 -0.36 4.59 16 30 H 0.15 2.33 6.43 -52.49 -0.34 1.99 16 31 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.15 1.04 7.56 -52.48 -0.40 0.64 16 33 H 0.15 1.42 7.57 -52.48 -0.40 1.03 16 LS Contribution 324.34 15.07 4.89 4.89 Total: -1.00 -32.59 324.34 -6.56 -39.14 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -2.25 Total: 0.83 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -2.52 Total: -12.07 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.68 Total: -34.90 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -1.90 Total: -32.38 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.12 Total: -4.38 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 23.28 SS G_CDS: -0.56 Total: 22.73 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.59 -6.56 -39.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201322.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.206 kcal (2) G-P(sol) polarization free energy of solvation -32.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds