Wall clock time and date at job start Tue Mar 31 2020 19:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00227 * 2 1 4 4 H 1.48497 * 109.47108 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47035 * 299.99807 * 3 2 1 6 6 H 1.48502 * 109.47055 * 59.99661 * 3 2 1 7 7 C 1.37882 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00035 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47424 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99470 * 0.02562 * 10 9 7 12 12 N 1.34776 * 120.00412 * 180.02562 * 10 9 7 13 13 C 1.39917 * 120.00076 * 174.73008 * 12 10 9 14 14 C 1.38891 * 120.07284 * 326.55350 * 13 12 10 15 15 C 1.38097 * 119.92952 * 179.67866 * 14 13 12 16 16 C 1.38308 * 120.06683 * 0.62029 * 15 14 13 17 17 C 1.38251 * 120.14059 * 359.67515 * 16 15 14 18 18 S 1.76202 * 119.96035 * 180.02562 * 17 16 15 19 19 O 1.42099 * 104.27653 * 26.05019 * 18 17 16 20 20 O 1.42106 * 104.27712 * 153.90979 * 18 17 16 21 21 C 1.81400 * 104.45119 * 269.97791 * 18 17 16 22 22 F 1.39906 * 109.47195 * 60.00076 * 21 18 17 23 23 F 1.39898 * 109.47597 * 179.97438 * 21 18 17 24 24 F 1.39895 * 109.47472 * 300.00477 * 21 18 17 25 25 C 1.38135 * 120.07661 * 0.02562 * 17 16 15 26 26 H 0.97004 * 119.99847 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47000 * 300.00167 * 9 7 2 28 28 H 1.09000 * 109.47242 * 59.99645 * 9 7 2 29 29 H 0.97006 * 119.99424 * 354.73050 * 12 10 9 30 30 H 1.08002 * 120.03544 * 359.97438 * 14 13 12 31 31 H 1.07993 * 119.96009 * 180.29592 * 15 14 13 32 32 H 1.08005 * 119.92261 * 179.70015 * 16 15 14 33 33 H 1.08003 * 120.03420 * 180.02562 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 8 3.4227 -3.4230 0.0010 12 7 1.7810 -4.9154 0.0000 13 6 2.6854 -5.9771 -0.1113 14 6 3.8385 -5.8323 -0.8719 15 6 4.7324 -6.8799 -0.9743 16 6 4.4741 -8.0767 -0.3309 17 6 3.3243 -8.2260 0.4220 18 16 3.0003 -9.7525 1.2403 19 8 4.2868 -10.3199 1.4456 20 8 2.1743 -9.3926 2.3392 21 6 2.0616 -10.7245 0.0301 22 9 2.8329 -10.9037 -1.1233 23 9 1.7462 -11.9725 0.5780 24 9 0.8823 -10.0473 -0.2982 25 6 2.4291 -7.1799 0.5335 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5567 0.8903 28 1 0.6247 -2.5571 -0.8896 29 1 0.8306 -5.0937 0.0768 30 1 4.0381 -4.8998 -1.3789 31 1 5.6315 -6.7663 -1.5617 32 1 5.1725 -8.8961 -0.4165 33 1 1.5312 -7.2971 1.1222 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143201322.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:57 Heat of formation + Delta-G solvation = -227.513391 kcal Electronic energy + Delta-G solvation = -26450.681590 eV Core-core repulsion = 21768.154752 eV Total energy + Delta-G solvation = -4682.526838 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.043 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -51.50654 -49.19409 -49.14037 -41.56205 -39.60079 -38.96075 -37.82254 -35.85992 -35.14081 -32.54110 -31.77831 -30.13444 -28.35289 -26.03065 -24.77691 -23.62039 -21.95814 -21.43285 -20.15769 -20.06115 -20.03945 -19.20574 -18.51863 -18.07670 -17.36781 -17.20717 -16.93579 -16.50777 -16.33562 -16.16756 -15.95901 -15.92111 -15.54739 -15.49501 -15.20154 -15.19742 -15.05510 -14.73194 -14.32721 -14.20279 -13.88279 -13.82873 -13.65365 -13.28774 -12.92113 -12.80667 -12.66168 -12.60521 -12.28156 -12.07590 -11.59857 -11.46220 -10.74580 -10.64185 -10.42747 -9.34286 -8.27435 -6.34575 -2.31401 -0.43020 0.08982 0.85534 1.39636 1.41650 1.53109 1.54948 1.69901 1.88914 1.96091 2.09379 2.39500 2.43011 2.51108 2.80979 3.09089 3.66488 3.90442 3.95937 4.05083 4.21257 4.46234 4.60187 4.76220 5.00764 5.10783 5.18406 5.21425 5.32797 5.68880 5.79290 5.99170 6.49402 6.78883 7.21912 7.36706 8.84639 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.027106 B = 0.002588 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.740166 B =10814.548992 C =11165.428664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.012 3.988 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.058 0.942 9 C 0.009 3.991 10 C 0.523 3.477 11 O -0.555 6.555 12 N -0.673 5.673 13 C 0.122 3.878 14 C -0.075 4.075 15 C -0.112 4.112 16 C -0.029 4.029 17 C -0.642 4.642 18 S 2.523 3.477 19 O -0.866 6.866 20 O -0.874 6.874 21 C -0.014 4.014 22 F -0.154 7.154 23 F -0.162 7.162 24 F -0.157 7.157 25 C -0.050 4.050 26 H 0.267 0.733 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.427 0.573 30 H 0.127 0.873 31 H 0.169 0.831 32 H 0.179 0.821 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.445 -24.010 -1.289 24.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.187 4.187 3 Si 0.787 3.213 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.077 0.923 9 C -0.031 4.031 10 C 0.314 3.686 11 O -0.432 6.432 12 N -0.320 5.320 13 C 0.026 3.974 14 C -0.095 4.095 15 C -0.131 4.131 16 C -0.049 4.049 17 C -0.735 4.735 18 S 2.686 3.314 19 O -0.863 6.863 20 O -0.871 6.871 21 C -0.140 4.140 22 F -0.136 7.136 23 F -0.144 7.144 24 F -0.138 7.138 25 C -0.071 4.071 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.266 0.734 30 H 0.144 0.856 31 H 0.187 0.813 32 H 0.196 0.804 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.209 -24.061 -0.589 24.625 hybrid contribution -0.871 1.124 -1.033 1.758 sum 4.338 -22.937 -1.622 23.400 Atomic orbital electron populations 1.70024 1.07098 1.28095 1.51064 1.25747 0.95793 1.02671 0.94495 0.85431 0.78709 0.79034 0.78086 1.19823 1.19914 1.20036 1.21380 0.93792 0.91014 1.51294 0.92331 1.19122 0.94166 0.90209 0.99588 1.21731 0.90341 0.83905 0.72617 1.90543 1.18771 1.84939 1.48914 1.43760 1.11004 1.03992 1.73271 1.18062 0.93225 0.88695 0.97429 1.21787 0.93482 0.99867 0.94407 1.21508 1.00101 0.91579 0.99935 1.21346 0.93641 0.99346 0.90537 1.29550 1.06033 1.17211 1.20692 1.06270 0.75157 0.75278 0.74664 1.93660 1.33680 1.78082 1.80916 1.93669 1.70011 1.80630 1.42798 1.35012 0.90177 0.90477 0.98345 1.93289 1.73095 1.95609 1.51584 1.93272 1.93520 1.43219 1.84404 1.93293 1.48636 1.78280 1.93638 1.20829 0.99763 0.91262 0.95292 0.92364 0.93293 0.93133 0.73435 0.85554 0.81341 0.80411 0.81521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 57. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.03 13.29 21.45 0.28 -51.75 16 2 C 0.01 0.66 5.46 84.66 0.46 1.12 16 3 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.54 -29.93 8.92 25.60 0.23 -29.70 16 8 H 0.06 3.43 6.75 -2.91 -0.02 3.41 16 9 C 0.01 0.41 5.46 29.10 0.16 0.57 16 10 C 0.52 21.77 7.56 87.66 0.66 22.44 16 11 O -0.55 -26.40 13.16 -3.07 -0.04 -26.44 16 12 N -0.67 -20.66 5.34 -303.51 -1.62 -22.28 16 13 C 0.12 3.38 6.28 38.15 0.24 3.62 16 14 C -0.07 -2.06 8.66 22.39 0.19 -1.86 16 15 C -0.11 -2.19 10.04 22.25 0.22 -1.97 16 16 C -0.03 -0.48 9.47 22.29 0.21 -0.27 16 17 C -0.64 -11.90 5.64 22.25 0.13 -11.77 16 18 S 2.52 40.65 5.19 -56.49 -0.29 40.36 16 19 O -0.87 -15.52 17.12 -127.65 -2.19 -17.70 16 20 O -0.87 -17.50 17.12 -127.65 -2.19 -19.69 16 21 C -0.01 -0.22 3.55 113.37 0.40 0.18 16 22 F -0.15 -2.41 17.35 44.97 0.78 -1.63 16 23 F -0.16 -2.71 17.36 44.97 0.78 -1.93 16 24 F -0.16 -2.68 17.35 44.97 0.78 -1.90 16 25 C -0.05 -1.08 9.39 22.39 0.21 -0.87 16 26 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 27 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.43 10.19 8.82 -92.70 -0.82 9.37 16 30 H 0.13 4.10 6.43 -2.91 -0.02 4.08 16 31 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.18 1.79 7.56 -2.91 -0.02 1.77 16 33 H 0.17 2.89 7.57 -2.91 -0.02 2.87 16 Total: -1.00 -70.07 324.34 1.83 -68.24 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.39 Total: 7.48 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 3.12 Total: -18.53 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -1.34 Total: -74.03 kcal Atomic # 8 Polarization: -59.42 SS G_CDS: -4.41 Total: -63.83 kcal Atomic # 9 Polarization: -7.79 SS G_CDS: 2.34 Total: -5.45 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 40.65 SS G_CDS: -0.29 Total: 40.36 kcal Total: -70.07 1.83 -68.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201322.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.271 kcal (2) G-P(sol) polarization free energy of solvation -70.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds