Wall clock time and date at job start Tue Mar 31 2020 19:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.43196 * 120.00096 * 328.65031 * 3 2 1 5 5 N 3.51034 * 140.68439 * 328.65584 * 2 1 3 6 6 C 1.41148 * 119.99688 * 148.37869 * 3 2 1 7 7 C 1.38986 * 119.99609 * 174.11570 * 6 3 2 8 8 H 1.07998 * 120.00243 * 337.55223 * 7 6 3 9 9 C 1.40842 * 119.99519 * 157.55330 * 7 6 3 10 10 N 1.30336 * 120.00238 * 350.58068 * 9 7 6 11 11 Si 1.86800 * 119.99661 * 170.58300 * 9 7 6 12 12 H 1.48494 * 109.47465 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47237 * 120.00042 * 11 9 7 14 14 H 1.48504 * 109.47002 * 239.99378 * 11 9 7 15 15 N 1.38358 * 120.00179 * 354.12003 * 6 3 2 16 16 C 1.39277 * 120.00017 * 120.39995 * 15 6 3 17 17 N 1.32367 * 119.71509 * 1.98619 * 16 15 6 18 18 C 1.31947 * 121.64863 * 179.75815 * 17 16 15 19 19 C 1.38064 * 120.90257 * 0.51635 * 18 17 16 20 20 S 1.76203 * 120.33351 * 179.72409 * 19 18 17 21 21 N 1.65594 * 107.22040 * 270.02710 * 20 19 18 22 22 O 1.42104 * 106.40045 * 23.56809 * 20 19 18 23 23 O 1.42100 * 106.39971 * 156.48515 * 20 19 18 24 24 C 1.38836 * 119.33792 * 359.74944 * 19 18 17 25 25 C 1.38522 * 118.48427 * 359.97438 * 24 19 18 26 26 F 1.35098 * 120.47535 * 180.02562 * 25 24 19 27 27 H 0.96996 * 119.99543 * 185.02029 * 10 9 7 28 28 H 0.96999 * 119.99493 * 300.40002 * 15 6 3 29 29 H 1.08000 * 119.55006 * 180.26714 * 18 17 16 30 30 H 0.97003 * 119.99587 * 359.97438 * 21 20 19 31 31 H 0.96997 * 120.00435 * 180.02562 * 21 20 19 32 32 H 1.08007 * 120.75715 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2845 -1.0581 0.6452 5 7 3.8519 -1.8995 1.1569 6 6 3.2732 1.0419 -0.6409 7 6 4.6576 1.1099 -0.5375 8 1 5.1620 0.6263 0.2859 9 6 5.4025 1.8096 -1.5066 10 7 4.8217 2.2351 -2.5930 11 14 7.2231 2.1275 -1.2348 12 1 7.6381 1.5468 0.0673 13 1 8.0044 1.4979 -2.3296 14 1 7.4741 3.5911 -1.2261 15 7 2.5865 1.9948 -1.3720 16 6 2.6753 3.3396 -1.0205 17 7 3.4494 3.7040 -0.0106 18 6 3.5655 4.9674 0.3520 19 6 2.8701 5.9611 -0.3076 20 16 3.0308 7.6427 0.1937 21 7 1.8651 7.9275 1.3349 22 8 4.2805 7.7443 0.8625 23 8 2.6876 8.4328 -0.9364 24 6 2.0425 5.6222 -1.3696 25 6 1.9447 4.2887 -1.7314 26 9 1.1517 3.9139 -2.7590 27 1 5.3481 2.6523 -3.2928 28 1 2.0431 1.7263 -2.1293 29 1 4.2103 5.2273 1.1785 30 1 1.2600 7.2164 1.5980 31 1 1.7869 8.8055 1.7397 32 1 1.4883 6.3811 -1.9020 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158218255.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:29 Heat of formation + Delta-G solvation = -42.253427 kcal Electronic energy + Delta-G solvation = -26088.354148 eV Core-core repulsion = 21896.842723 eV Total energy + Delta-G solvation = -4191.511425 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 337.043 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.91924 -41.36339 -38.97430 -38.14261 -37.07378 -36.83670 -36.56506 -35.33473 -33.94715 -33.45013 -32.79250 -30.31193 -28.86090 -25.31868 -24.72909 -22.98340 -20.87497 -20.57897 -19.65141 -19.30625 -19.11586 -18.27895 -18.05070 -17.80816 -17.50427 -16.85278 -16.79434 -16.38306 -16.28195 -15.50983 -15.34451 -14.77464 -14.62937 -14.38708 -14.19692 -13.99407 -13.90680 -13.51297 -13.44235 -13.29460 -13.17693 -13.13547 -13.10786 -12.99221 -12.78147 -12.75613 -12.60365 -12.23559 -11.88247 -11.59386 -11.24692 -10.89016 -10.58241 -9.96645 -9.40366 -8.75781 -7.17163 -0.57473 -0.32025 0.02086 0.57278 1.33839 1.48404 1.50964 1.92481 2.03555 2.04811 2.19199 2.23983 2.44370 2.50642 2.61404 2.82638 2.92876 3.31970 3.40310 3.53981 3.79131 3.80922 3.99293 4.28367 4.53420 4.58197 4.62973 4.71132 5.20353 5.37054 5.37851 5.60735 5.87950 6.06629 6.25927 6.43617 6.51051 6.99279 7.13478 7.31233 7.62813 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.011766 B = 0.004700 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.256938 B = 5956.223861 C = 6952.552684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C 0.314 3.686 3 C -0.321 4.321 4 C 0.330 3.670 5 N -0.554 5.554 6 C 0.365 3.635 7 C -0.334 4.334 8 H 0.109 0.891 9 C 0.053 3.947 10 N -0.734 5.734 11 Si 0.973 3.027 12 H -0.250 1.250 13 H -0.256 1.256 14 H -0.256 1.256 15 N -0.620 5.620 16 C 0.452 3.548 17 N -0.526 5.526 18 C 0.239 3.761 19 C -0.775 4.775 20 S 2.750 3.250 21 N -1.234 6.234 22 O -0.990 6.990 23 O -0.994 6.994 24 C 0.034 3.966 25 C -0.053 4.053 26 F -0.136 7.136 27 H 0.314 0.686 28 H 0.416 0.584 29 H 0.199 0.801 30 H 0.429 0.571 31 H 0.430 0.570 32 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.864 15.882 0.132 15.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.238 5.238 2 C 0.008 3.992 3 C -0.340 4.340 4 C 0.024 3.976 5 N -0.237 5.237 6 C 0.261 3.739 7 C -0.360 4.360 8 H 0.127 0.873 9 C -0.177 4.177 10 N -0.353 5.353 11 Si 0.792 3.208 12 H -0.173 1.173 13 H -0.180 1.180 14 H -0.180 1.180 15 N -0.240 5.240 16 C 0.213 3.787 17 N -0.243 5.243 18 C 0.075 3.925 19 C -0.867 4.867 20 S 2.836 3.164 21 N -0.915 5.915 22 O -0.979 6.979 23 O -0.983 6.983 24 C 0.008 3.992 25 C -0.080 4.080 26 F -0.115 7.115 27 H 0.126 0.874 28 H 0.255 0.745 29 H 0.216 0.784 30 H 0.259 0.741 31 H 0.263 0.737 32 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.201 14.471 0.680 14.537 hybrid contribution -0.631 -0.164 -1.101 1.280 sum 0.569 14.307 -0.421 14.324 Atomic orbital electron populations 1.81068 1.12787 1.12207 1.17749 1.25320 0.91919 0.91379 0.90592 1.12815 0.81735 1.04475 1.35010 1.24783 0.91728 0.90852 0.90250 1.81079 1.10145 1.14276 1.18208 1.16648 0.89602 0.83739 0.83875 1.20430 0.91138 1.18641 1.05820 0.87334 1.27062 1.06646 0.90691 0.93322 1.69428 1.41872 1.19524 1.04474 0.85186 0.74538 0.80013 0.81058 1.17268 1.17979 1.18042 1.41622 1.48491 1.01925 1.32002 1.18614 0.87168 0.84851 0.88086 1.67630 1.20464 1.20572 1.15633 1.22844 0.89889 0.85379 0.94372 1.31044 1.16988 1.25747 1.12960 0.99999 0.72561 0.71135 0.72673 1.52677 1.53413 1.23905 1.61493 1.93572 1.43397 1.85720 1.75205 1.93557 1.84208 1.67667 1.52890 1.21203 0.92069 0.93955 0.91996 1.17978 1.02227 0.93991 0.93820 1.91467 1.71870 1.91936 1.56226 0.87383 0.74503 0.78424 0.74133 0.73695 0.80064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -25.48 18.54 19.00 0.35 -25.13 16 2 C 0.31 13.88 14.82 88.33 1.31 15.19 16 3 C -0.32 -13.75 5.88 -20.07 -0.12 -13.87 16 4 C 0.33 14.87 13.99 88.32 1.24 16.11 16 5 N -0.55 -25.91 18.54 19.01 0.35 -25.56 16 6 C 0.36 14.62 5.51 39.01 0.22 14.83 16 7 C -0.33 -13.07 7.57 23.09 0.17 -12.89 16 8 H 0.11 4.37 7.18 -2.91 -0.02 4.35 16 9 C 0.05 1.89 4.78 85.55 0.41 2.30 16 10 N -0.73 -26.09 11.12 21.98 0.24 -25.84 16 11 Si 0.97 28.65 29.58 68.60 2.03 30.68 16 12 H -0.25 -7.56 7.11 99.48 0.71 -6.85 16 13 H -0.26 -7.24 7.11 99.48 0.71 -6.54 16 14 H -0.26 -7.45 7.11 99.48 0.71 -6.74 16 15 N -0.62 -23.00 3.31 -184.51 -0.61 -23.61 16 16 C 0.45 15.60 6.07 133.01 0.81 16.41 16 17 N -0.53 -17.51 8.50 -192.94 -1.64 -19.15 16 18 C 0.24 6.25 10.67 84.63 0.90 7.15 16 19 C -0.78 -17.56 5.96 22.37 0.13 -17.43 16 20 S 2.75 51.56 6.29 -56.49 -0.36 51.21 16 21 N -1.23 -12.40 9.55 37.02 0.35 -12.04 16 22 O -0.99 -24.20 17.30 -128.00 -2.21 -26.41 16 23 O -0.99 -24.31 17.35 -128.00 -2.22 -26.53 16 24 C 0.03 0.84 9.63 22.48 0.22 1.06 16 25 C -0.05 -1.62 7.35 22.59 0.17 -1.46 16 26 F -0.14 -4.27 16.65 44.97 0.75 -3.52 16 27 H 0.31 10.02 8.29 -92.71 -0.77 9.25 16 28 H 0.42 15.05 8.29 -92.71 -0.77 14.29 16 29 H 0.20 4.09 7.62 -2.91 -0.02 4.07 16 30 H 0.43 2.77 8.92 -96.75 -0.86 1.90 16 31 H 0.43 2.64 8.96 -96.75 -0.87 1.77 16 32 H 0.18 3.48 7.70 -2.91 -0.02 3.46 16 Total: -1.00 -60.83 327.25 1.28 -59.55 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -1.21 Total: 18.95 kcal Atomic # 6 Polarization: 21.95 SS G_CDS: 5.45 Total: 27.41 kcal Atomic # 7 Polarization: -130.39 SS G_CDS: -0.95 Total: -131.34 kcal Atomic # 8 Polarization: -48.50 SS G_CDS: -4.44 Total: -52.94 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.75 Total: -3.52 kcal Atomic # 14 Polarization: 28.65 SS G_CDS: 2.03 Total: 30.68 kcal Atomic # 16 Polarization: 51.56 SS G_CDS: -0.36 Total: 51.21 kcal Total: -60.83 1.28 -59.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158218255.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.298 kcal (2) G-P(sol) polarization free energy of solvation -60.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds