Wall clock time and date at job start Tue Mar 31 2020 20:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30911 * 1 3 3 Si 1.86799 * 120.00021 * 2 1 4 4 H 1.48503 * 109.46859 * 240.00130 * 3 2 1 5 5 H 1.48496 * 109.47290 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46896 * 120.00456 * 3 2 1 7 7 C 1.39872 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99702 * 163.25104 * 7 2 1 9 9 C 1.41197 * 119.99897 * 343.24928 * 7 2 1 10 10 C 1.40789 * 120.56055 * 155.70829 * 9 7 2 11 11 N 1.31475 * 120.38630 * 180.02562 * 10 9 7 12 12 C 1.32744 * 121.74005 * 0.02562 * 11 10 9 13 13 N 1.38410 * 119.43638 * 179.97438 * 12 11 10 14 14 C 1.46500 * 120.00211 * 0.02562 * 13 12 11 15 15 C 1.50701 * 109.47347 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99868 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00120 * 179.97438 * 15 14 13 18 18 C 1.46496 * 120.00105 * 179.97438 * 17 15 14 19 19 C 1.53009 * 109.47204 * 180.02562 * 18 17 15 20 20 F 1.39900 * 109.46921 * 59.99801 * 19 18 17 21 21 F 1.39894 * 109.47109 * 179.97438 * 19 18 17 22 22 F 1.39901 * 109.46811 * 300.00172 * 19 18 17 23 23 C 1.39790 * 121.12561 * 359.97438 * 12 11 10 24 24 Cl 1.73608 * 120.26279 * 180.02562 * 23 12 11 25 25 C 1.36669 * 119.47667 * 0.02562 * 23 12 11 26 26 H 0.97002 * 119.99496 * 359.97438 * 1 2 3 27 27 H 1.07993 * 119.81098 * 359.74324 * 10 9 7 28 28 H 0.97006 * 120.00069 * 180.02562 * 13 12 11 29 29 H 1.08999 * 109.46590 * 300.00008 * 14 13 12 30 30 H 1.09000 * 109.46762 * 59.99902 * 14 13 12 31 31 H 0.97001 * 120.00065 * 0.02562 * 17 15 14 32 32 H 1.08999 * 109.47483 * 299.99901 * 18 17 15 33 33 H 1.09000 * 109.47084 * 60.00539 * 18 17 15 34 34 H 1.07996 * 120.80237 * 180.02562 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0968 1.6963 -1.2126 5 1 1.2782 2.7464 0.0006 6 1 3.0969 1.6963 1.2125 7 6 2.0084 -1.2114 -0.0005 8 1 3.0540 -1.2311 -0.2701 9 6 1.3473 -2.4083 0.3513 10 6 1.8243 -3.6510 -0.1073 11 7 1.2057 -4.7634 0.2220 12 6 0.1221 -4.7592 0.9887 13 7 -0.4917 -5.9587 1.3056 14 6 0.0555 -7.2186 0.7962 15 6 -0.7904 -8.3669 1.2828 16 8 -1.7557 -8.1538 1.9855 17 7 -0.4749 -9.6305 0.9363 18 6 -1.2969 -10.7468 1.4099 19 6 -0.7255 -12.0627 0.8777 20 9 0.5862 -12.2213 1.3378 21 9 -1.5101 -13.1287 1.3304 22 9 -0.7295 -12.0410 -0.5211 23 6 -0.4098 -3.5641 1.4816 24 17 -1.8277 -3.5847 2.4831 25 6 0.1954 -2.3792 1.1688 26 1 -0.4849 0.8401 0.0004 27 1 2.7007 -3.6905 -0.7371 28 1 -1.2842 -5.9651 1.8649 29 1 0.0532 -7.2013 -0.2937 30 1 1.0771 -7.3425 1.1555 31 1 0.2969 -9.8009 0.3740 32 1 -1.2934 -10.7640 2.4997 33 1 -2.3189 -10.6230 1.0517 34 1 -0.1971 -1.4434 1.5382 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162498925.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:23 Heat of formation + Delta-G solvation = -184.536248 kcal Electronic energy + Delta-G solvation = -25466.435581 eV Core-core repulsion = 20816.021417 eV Total energy + Delta-G solvation = -4650.414164 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.055 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.21630 -48.73066 -48.69348 -41.13023 -40.36310 -37.28656 -36.80563 -36.20177 -35.15841 -32.35909 -31.77607 -30.63632 -28.27606 -26.27589 -24.42171 -23.64285 -22.85316 -21.86785 -19.67929 -19.60249 -19.50393 -19.25911 -18.52048 -17.66310 -17.21380 -16.91062 -16.75500 -16.41081 -15.96935 -15.70650 -15.59193 -15.26839 -15.21598 -15.11746 -14.83755 -14.83580 -14.69677 -14.46136 -14.22192 -13.86330 -13.63394 -13.55957 -13.16065 -13.01334 -12.84951 -12.66642 -12.41992 -12.02444 -11.62662 -11.29336 -11.23418 -10.63536 -10.50138 -10.16747 -9.98438 -8.72406 -8.46879 -6.18570 0.66307 0.99210 1.32664 1.34738 1.44049 1.44873 1.54839 1.58231 1.75636 2.24545 2.61228 2.63441 2.75389 2.93634 3.13859 3.58739 3.65278 4.09400 4.12401 4.27601 4.45585 4.51230 4.59361 4.77403 4.91606 5.08084 5.23555 5.30909 5.79836 5.80555 6.06822 6.32247 6.56940 6.69917 6.83112 6.87390 6.89921 7.66881 8.35234 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.026587 B = 0.002213 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.876636 B =12650.429161 C =13445.243260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.033 3.967 3 Si 0.982 3.018 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.479 4.479 8 H 0.090 0.910 9 C 0.011 3.989 10 C 0.014 3.986 11 N -0.502 5.502 12 C 0.292 3.708 13 N -0.730 5.730 14 C 0.128 3.872 15 C 0.527 3.473 16 O -0.561 6.561 17 N -0.715 5.715 18 C 0.079 3.921 19 C 0.459 3.541 20 F -0.181 7.181 21 F -0.175 7.175 22 F -0.181 7.181 23 C -0.114 4.114 24 Cl -0.090 7.090 25 C -0.104 4.104 26 H 0.288 0.712 27 H 0.155 0.845 28 H 0.408 0.592 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.423 0.577 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.454 -18.183 1.057 18.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.181 4.181 3 Si 0.803 3.197 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.510 4.510 8 H 0.108 0.892 9 C 0.005 3.995 10 C -0.145 4.145 11 N -0.218 5.218 12 C 0.058 3.942 13 N -0.374 5.374 14 C 0.001 3.999 15 C 0.315 3.685 16 O -0.439 6.439 17 N -0.371 5.371 18 C -0.046 4.046 19 C 0.404 3.596 20 F -0.162 7.162 21 F -0.157 7.157 22 F -0.162 7.162 23 C -0.147 4.147 24 Cl -0.062 7.062 25 C -0.131 4.131 26 H 0.099 0.901 27 H 0.172 0.828 28 H 0.247 0.753 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.261 0.739 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.036 -18.849 1.222 18.917 hybrid contribution -0.230 1.307 0.218 1.345 sum -1.266 -17.542 1.440 17.646 Atomic orbital electron populations 1.69855 1.08980 1.30705 1.36198 1.26733 0.95430 1.04562 0.91414 0.85232 0.78645 0.75668 0.80114 1.18108 1.19941 1.18575 1.19594 0.98275 0.91329 1.41754 0.89215 1.18609 0.93165 0.94993 0.92686 1.22646 1.02044 0.86830 1.02978 1.66822 1.07912 1.31922 1.15184 1.17540 0.93119 0.84679 0.98888 1.43559 1.33404 1.01219 1.59221 1.20795 0.97083 0.81395 1.00639 1.20692 0.84618 0.84142 0.79091 1.90715 1.29755 1.84743 1.38708 1.45402 1.32716 1.04548 1.54455 1.22544 0.97577 0.80958 1.03567 1.20403 0.76175 0.87204 0.75811 1.93238 1.38114 1.96285 1.88564 1.93228 1.74428 1.59131 1.88894 1.93239 1.96270 1.96761 1.29957 1.21008 0.93973 0.95067 1.04630 1.98250 1.40363 1.98662 1.68937 1.21247 0.97939 0.95629 0.98316 0.90133 0.82797 0.75326 0.88423 0.88187 0.73917 0.85849 0.85909 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.75 10.91 21.82 0.24 -41.51 16 2 C 0.03 1.57 5.18 85.23 0.44 2.01 16 3 Si 0.98 36.24 29.59 68.60 2.03 38.27 16 4 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 5 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 6 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 7 C -0.48 -23.73 9.07 23.39 0.21 -23.52 16 8 H 0.09 4.15 7.90 -2.91 -0.02 4.13 16 9 C 0.01 0.56 5.59 -21.18 -0.12 0.44 16 10 C 0.01 0.62 10.97 85.37 0.94 1.56 16 11 N -0.50 -21.73 9.52 -191.09 -1.82 -23.55 16 12 C 0.29 12.58 7.48 133.32 1.00 13.57 16 13 N -0.73 -26.24 5.61 -348.48 -1.96 -28.19 16 14 C 0.13 3.41 6.14 85.63 0.53 3.93 16 15 C 0.53 12.23 7.90 87.66 0.69 12.92 16 16 O -0.56 -16.99 15.67 -3.04 -0.05 -17.03 16 17 N -0.72 -10.65 5.42 -463.06 -2.51 -13.16 16 18 C 0.08 0.96 5.64 86.38 0.49 1.44 16 19 C 0.46 5.49 3.11 71.99 0.22 5.71 16 20 F -0.18 -2.44 17.18 44.97 0.77 -1.67 16 21 F -0.18 -2.33 17.32 44.97 0.78 -1.56 16 22 F -0.18 -2.47 17.18 44.97 0.77 -1.70 16 23 C -0.11 -5.25 6.32 22.28 0.14 -5.11 16 24 Cl -0.09 -3.63 27.56 -2.72 -0.07 -3.70 16 25 C -0.10 -5.26 8.52 22.65 0.19 -5.07 16 26 H 0.29 13.28 8.30 -92.71 -0.77 12.51 16 27 H 0.15 6.27 8.06 -2.91 -0.02 6.24 16 28 H 0.41 15.00 6.04 -92.70 -0.56 14.44 16 29 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.42 4.44 8.36 -92.71 -0.78 3.66 16 32 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.12 6.57 6.20 -2.91 -0.02 6.56 16 Total: -1.00 -59.83 330.60 2.79 -57.04 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: -0.13 Total: 28.85 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 4.73 Total: 7.90 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -6.04 Total: -106.41 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.05 Total: -17.03 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 2.32 Total: -4.93 kcal Atomic # 14 Polarization: 36.24 SS G_CDS: 2.03 Total: 38.27 kcal Atomic # 17 Polarization: -3.63 SS G_CDS: -0.07 Total: -3.70 kcal Total: -59.83 2.79 -57.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162498925.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.496 kcal (2) G-P(sol) polarization free energy of solvation -59.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds