Wall clock time and date at job start Tue Mar 31 2020 19:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86792 * 120.00186 * 2 1 4 4 H 1.48495 * 109.47378 * 275.55846 * 3 2 1 5 5 H 1.48499 * 109.47189 * 35.55588 * 3 2 1 6 6 H 1.48500 * 109.47342 * 155.55389 * 3 2 1 7 7 C 1.38955 * 119.99576 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99604 * 33.18886 * 7 2 1 9 9 N 1.37094 * 119.99814 * 213.18507 * 7 2 1 10 10 C 1.46504 * 119.99997 * 40.83160 * 9 7 2 11 11 C 1.50702 * 109.47014 * 96.62257 * 10 9 7 12 12 C 1.38231 * 119.99822 * 95.52273 * 11 10 9 13 13 C 1.38238 * 120.00217 * 179.97438 * 12 11 10 14 14 C 1.38231 * 119.99840 * 359.97189 * 13 12 11 15 15 C 1.38245 * 120.00058 * 0.28298 * 14 13 12 16 16 C 1.38226 * 120.00045 * 275.49813 * 11 10 9 17 17 C 1.34776 * 120.00220 * 220.83223 * 9 7 2 18 18 O 1.21292 * 120.00158 * 180.02562 * 17 9 7 19 19 C 1.50702 * 119.99532 * 359.97438 * 17 9 7 20 20 F 1.39900 * 109.47550 * 299.99986 * 19 17 9 21 21 F 1.39895 * 109.47122 * 60.00810 * 19 17 9 22 22 S 1.81401 * 109.46665 * 180.02562 * 19 17 9 23 23 O 1.42094 * 110.54559 * 43.24995 * 22 19 17 24 24 O 1.42100 * 110.54016 * 180.02562 * 22 19 17 25 25 F 1.61004 * 104.45004 * 291.62487 * 22 19 17 26 26 H 0.97001 * 119.99832 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46865 * 336.62547 * 10 9 7 28 28 H 1.09001 * 109.47078 * 216.62379 * 10 9 7 29 29 H 1.08009 * 120.00238 * 359.97438 * 12 11 10 30 30 H 1.07999 * 120.00496 * 180.02562 * 13 12 11 31 31 H 1.08002 * 120.00229 * 180.02562 * 14 13 12 32 32 H 1.07992 * 119.99827 * 179.72235 * 15 14 13 33 33 H 1.08004 * 120.00425 * 0.02562 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.3783 2.1142 -1.3934 5 1 1.5093 2.6159 0.8141 6 1 3.5995 1.4091 0.5794 7 6 2.0088 -1.2034 0.0005 8 1 1.6009 -2.0626 -0.5111 9 7 3.2121 -1.3000 0.6504 10 6 3.3940 -0.6573 1.9544 11 6 3.1696 -1.6689 3.0486 12 6 4.2456 -2.3333 3.6069 13 6 4.0399 -3.2609 4.6110 14 6 2.7582 -3.5235 5.0573 15 6 1.6817 -2.8629 4.4954 16 6 1.8879 -1.9320 3.4945 17 6 4.2277 -1.9862 0.0898 18 8 5.2921 -2.0720 0.6651 19 6 4.0403 -2.6477 -1.2512 20 9 3.0045 -3.5845 -1.1685 21 9 3.7181 -1.6793 -2.2079 22 16 5.5757 -3.4857 -1.7317 23 8 6.1305 -4.1833 -0.6250 24 8 5.4243 -4.1178 -2.9953 25 9 6.6166 -2.2892 -2.0091 26 1 -0.4850 0.8401 -0.0004 27 1 2.6781 0.1577 2.0607 28 1 4.4075 -0.2626 2.0266 29 1 5.2471 -2.1278 3.2585 30 1 4.8805 -3.7797 5.0475 31 1 2.5975 -4.2479 5.8421 32 1 0.6800 -3.0715 4.8410 33 1 1.0472 -1.4129 3.0583 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179617013.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:49 Heat of formation + Delta-G solvation = -192.992140 kcal Electronic energy + Delta-G solvation = -28562.847727 eV Core-core repulsion = 23881.817843 eV Total energy + Delta-G solvation = -4681.029884 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.043 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -49.08164 -48.23631 -47.05228 -39.65243 -38.41495 -37.61658 -36.60408 -35.58958 -32.65349 -31.32476 -30.45052 -28.52946 -26.11984 -25.09415 -22.10691 -21.57720 -20.66166 -20.15777 -18.94620 -18.55153 -18.20372 -17.20091 -16.97763 -16.52733 -16.02224 -15.70185 -15.34576 -15.04417 -14.86051 -14.50400 -14.26824 -14.23337 -14.07044 -13.71678 -13.62820 -13.39599 -13.01711 -12.97562 -12.93292 -12.73777 -12.65693 -12.56496 -12.45573 -12.14199 -11.65541 -11.37713 -11.18102 -11.08760 -10.65890 -10.49708 -10.29547 -9.73492 -9.23683 -8.48198 -8.37416 -8.30086 -6.97941 -4.50689 -0.83329 1.68163 1.84628 2.18881 2.50494 2.77585 2.91829 3.00599 3.08873 3.13301 3.77234 3.81624 4.10914 4.26996 4.37218 4.57666 4.91892 5.24394 5.26199 5.37585 5.57378 5.70289 5.92416 6.05654 6.12809 6.39247 6.50127 6.75607 6.86986 6.89603 7.11614 7.42212 7.49463 7.79252 8.27200 8.69729 8.97798 10.09322 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.010876 B = 0.006855 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.911664 B = 4083.830310 C = 5643.420472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.092 3.908 3 Si 0.850 3.150 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.252 1.252 7 C -0.380 4.380 8 H 0.118 0.882 9 N -0.389 5.389 10 C 0.147 3.853 11 C -0.098 4.098 12 C -0.093 4.093 13 C -0.132 4.132 14 C -0.123 4.123 15 C -0.131 4.131 16 C -0.087 4.087 17 C 0.410 3.590 18 O -0.558 6.558 19 C -0.177 4.177 20 F -0.145 7.145 21 F -0.143 7.143 22 S 2.592 3.408 23 O -0.864 6.864 24 O -0.898 6.898 25 F -0.451 7.451 26 H 0.284 0.716 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.126 -2.223 2.947 6.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.123 4.123 3 Si 0.673 3.327 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.176 1.176 7 C -0.506 4.506 8 H 0.135 0.865 9 N -0.103 5.103 10 C 0.025 3.975 11 C -0.099 4.099 12 C -0.112 4.112 13 C -0.150 4.150 14 C -0.141 4.141 15 C -0.149 4.149 16 C -0.105 4.105 17 C 0.193 3.807 18 O -0.445 6.445 19 C -0.297 4.297 20 F -0.126 7.126 21 F -0.125 7.125 22 S 2.670 3.330 23 O -0.862 6.862 24 O -0.896 6.896 25 F -0.450 7.450 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.146 0.854 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.878 -2.425 3.044 7.050 hybrid contribution -0.859 1.209 -0.175 1.493 sum 5.019 -1.216 2.869 5.907 Atomic orbital electron populations 1.69919 1.06883 1.29439 1.37552 1.25338 0.94723 0.98834 0.93390 0.87265 0.82050 0.83289 0.80088 1.19111 1.19819 1.17601 1.19351 0.94363 0.99909 1.37023 0.86467 1.43612 1.10228 1.42698 1.13771 1.20790 1.02441 0.93450 0.80797 1.20142 0.93648 0.99222 0.96856 1.21240 0.99262 0.95422 0.95268 1.21069 0.96864 0.98921 0.98180 1.21082 0.93026 0.99870 1.00164 1.21087 0.98567 0.97553 0.97702 1.21202 0.96880 0.97128 0.95316 1.19912 0.85779 0.89067 0.85904 1.90777 1.25181 1.66047 1.62496 1.33684 1.07521 0.90939 0.97512 1.93128 1.59965 1.62796 1.96750 1.93161 1.94190 1.62993 1.62122 1.08129 0.75443 0.73060 0.76382 1.93804 1.71806 1.66997 1.53600 1.93783 1.84688 1.70201 1.40975 1.93639 1.78229 1.77662 1.95488 0.90589 0.89566 0.89757 0.85373 0.86495 0.86743 0.86478 0.85315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -19.83 13.96 55.50 0.77 -19.05 16 2 C 0.09 2.18 4.96 -17.46 -0.09 2.10 16 3 Si 0.85 17.88 26.45 -169.99 -4.50 13.39 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.25 -5.17 6.13 56.52 0.35 -4.82 16 7 C -0.38 -9.18 8.10 -14.93 -0.12 -9.30 16 8 H 0.12 3.06 6.35 -52.49 -0.33 2.72 16 9 N -0.39 -8.75 2.08 -116.09 -0.24 -8.99 16 10 C 0.15 2.97 3.72 -5.19 -0.02 2.95 16 11 C -0.10 -1.85 5.40 -104.63 -0.57 -2.42 16 12 C -0.09 -1.65 9.32 -39.58 -0.37 -2.02 16 13 C -0.13 -2.04 10.05 -39.58 -0.40 -2.44 16 14 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 15 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 16 C -0.09 -1.57 9.72 -39.58 -0.38 -1.96 16 17 C 0.41 8.96 7.06 -10.98 -0.08 8.88 16 18 O -0.56 -12.21 13.76 -14.23 -0.20 -12.41 16 19 C -0.18 -3.48 1.98 36.01 0.07 -3.41 16 20 F -0.15 -2.89 15.31 2.25 0.03 -2.85 16 21 F -0.14 -2.84 16.22 2.25 0.04 -2.80 16 22 S 2.59 43.23 5.74 -107.50 -0.62 42.61 16 23 O -0.86 -15.81 16.81 -65.61 -1.10 -16.91 16 24 O -0.90 -15.15 18.16 -57.54 -1.04 -16.20 16 25 F -0.45 -7.13 17.85 2.25 0.04 -7.09 16 26 H 0.28 6.40 8.31 -40.82 -0.34 6.06 16 27 H 0.09 1.70 5.09 -51.93 -0.26 1.44 16 28 H 0.08 1.62 7.54 -51.93 -0.39 1.23 16 29 H 0.13 2.26 7.58 -52.48 -0.40 1.86 16 30 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 31 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.13 2.43 8.06 -52.48 -0.42 2.01 16 LS Contribution 314.19 15.07 4.73 4.73 Total: -1.00 -27.53 314.19 -7.09 -34.62 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -2.27 Total: 3.20 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -2.74 Total: -12.25 kcal Atomic # 7 Polarization: -28.58 SS G_CDS: 0.53 Total: -28.04 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -2.34 Total: -45.52 kcal Atomic # 9 Polarization: -12.85 SS G_CDS: 0.11 Total: -12.74 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -4.50 Total: 13.39 kcal Atomic # 16 Polarization: 43.23 SS G_CDS: -0.62 Total: 42.61 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.53 -7.09 -34.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179617013.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.369 kcal (2) G-P(sol) polarization free energy of solvation -27.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds