Wall clock time and date at job start Tue Mar 31 2020 19:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86792 * 120.00186 * 2 1 4 4 H 1.48495 * 109.47378 * 275.55846 * 3 2 1 5 5 H 1.48499 * 109.47189 * 35.55588 * 3 2 1 6 6 H 1.48500 * 109.47342 * 155.55389 * 3 2 1 7 7 C 1.38955 * 119.99576 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99604 * 33.18886 * 7 2 1 9 9 N 1.37094 * 119.99814 * 213.18507 * 7 2 1 10 10 C 1.46504 * 119.99997 * 40.83160 * 9 7 2 11 11 C 1.50702 * 109.47014 * 96.62257 * 10 9 7 12 12 C 1.38231 * 119.99822 * 95.52273 * 11 10 9 13 13 C 1.38238 * 120.00217 * 179.97438 * 12 11 10 14 14 C 1.38231 * 119.99840 * 359.97189 * 13 12 11 15 15 C 1.38245 * 120.00058 * 0.28298 * 14 13 12 16 16 C 1.38226 * 120.00045 * 275.49813 * 11 10 9 17 17 C 1.34776 * 120.00220 * 220.83223 * 9 7 2 18 18 O 1.21292 * 120.00158 * 180.02562 * 17 9 7 19 19 C 1.50702 * 119.99532 * 359.97438 * 17 9 7 20 20 F 1.39900 * 109.47550 * 299.99986 * 19 17 9 21 21 F 1.39895 * 109.47122 * 60.00810 * 19 17 9 22 22 S 1.81401 * 109.46665 * 180.02562 * 19 17 9 23 23 O 1.42094 * 110.54559 * 43.24995 * 22 19 17 24 24 O 1.42100 * 110.54016 * 180.02562 * 22 19 17 25 25 F 1.61004 * 104.45004 * 291.62487 * 22 19 17 26 26 H 0.97001 * 119.99832 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46865 * 336.62547 * 10 9 7 28 28 H 1.09001 * 109.47078 * 216.62379 * 10 9 7 29 29 H 1.08009 * 120.00238 * 359.97438 * 12 11 10 30 30 H 1.07999 * 120.00496 * 180.02562 * 13 12 11 31 31 H 1.08002 * 120.00229 * 180.02562 * 14 13 12 32 32 H 1.07992 * 119.99827 * 179.72235 * 15 14 13 33 33 H 1.08004 * 120.00425 * 0.02562 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.3783 2.1142 -1.3934 5 1 1.5093 2.6159 0.8141 6 1 3.5995 1.4091 0.5794 7 6 2.0088 -1.2034 0.0005 8 1 1.6009 -2.0626 -0.5111 9 7 3.2121 -1.3000 0.6504 10 6 3.3940 -0.6573 1.9544 11 6 3.1696 -1.6689 3.0486 12 6 4.2456 -2.3333 3.6069 13 6 4.0399 -3.2609 4.6110 14 6 2.7582 -3.5235 5.0573 15 6 1.6817 -2.8629 4.4954 16 6 1.8879 -1.9320 3.4945 17 6 4.2277 -1.9862 0.0898 18 8 5.2921 -2.0720 0.6651 19 6 4.0403 -2.6477 -1.2512 20 9 3.0045 -3.5845 -1.1685 21 9 3.7181 -1.6793 -2.2079 22 16 5.5757 -3.4857 -1.7317 23 8 6.1305 -4.1833 -0.6250 24 8 5.4243 -4.1178 -2.9953 25 9 6.6166 -2.2892 -2.0091 26 1 -0.4850 0.8401 -0.0004 27 1 2.6781 0.1577 2.0607 28 1 4.4075 -0.2626 2.0266 29 1 5.2471 -2.1278 3.2585 30 1 4.8805 -3.7797 5.0475 31 1 2.5975 -4.2479 5.8421 32 1 0.6800 -3.0715 4.8410 33 1 1.0472 -1.4129 3.0583 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179617013.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:48 Heat of formation + Delta-G solvation = -209.532490 kcal Electronic energy + Delta-G solvation = -28563.564970 eV Core-core repulsion = 23881.817843 eV Total energy + Delta-G solvation = -4681.747127 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.043 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.64210 -49.63290 -48.60288 -41.25799 -39.80588 -39.06963 -38.05809 -37.28002 -34.41599 -32.78104 -31.72939 -30.07433 -27.70338 -26.79568 -23.40044 -23.00209 -22.06300 -21.72610 -20.53772 -20.16914 -19.69322 -18.71662 -18.50549 -17.95920 -17.49800 -17.32720 -17.00227 -16.53015 -16.29240 -15.90867 -15.80001 -15.62236 -15.50639 -15.30350 -15.25381 -14.97463 -14.68782 -14.42717 -14.31843 -14.21681 -14.11181 -14.06314 -13.92889 -13.48410 -13.27202 -13.03363 -12.73805 -12.69599 -12.12709 -11.96710 -11.78950 -11.41437 -10.96864 -10.06973 -9.76660 -9.69169 -8.80369 -6.36827 -2.25665 0.36824 0.55326 0.69761 0.92105 1.20587 1.31657 1.34627 1.38855 1.56211 2.05665 2.32232 2.49233 2.71569 2.93140 2.97767 3.24876 3.87978 3.89438 4.19747 4.29177 4.33768 4.48271 4.72029 4.78024 5.03614 5.12681 5.21164 5.60679 5.63448 5.70050 5.80189 5.90857 6.15801 6.48568 6.88115 7.19895 8.31157 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.010876 B = 0.006855 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.911664 B = 4083.830310 C = 5643.420472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.269 1.269 5 H -0.260 1.260 6 H -0.246 1.246 7 C -0.387 4.387 8 H 0.089 0.911 9 N -0.399 5.399 10 C 0.142 3.858 11 C -0.118 4.118 12 C -0.109 4.109 13 C -0.130 4.130 14 C -0.114 4.114 15 C -0.131 4.131 16 C -0.107 4.107 17 C 0.404 3.596 18 O -0.561 6.561 19 C -0.194 4.194 20 F -0.150 7.150 21 F -0.147 7.147 22 S 2.635 3.365 23 O -0.871 6.871 24 O -0.889 6.889 25 F -0.440 7.440 26 H 0.290 0.710 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.123 0.877 30 H 0.147 0.853 31 H 0.153 0.847 32 H 0.141 0.859 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.352 -2.893 3.975 8.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.148 4.148 3 Si 0.715 3.285 4 H -0.194 1.194 5 H -0.184 1.184 6 H -0.169 1.169 7 C -0.514 4.514 8 H 0.106 0.894 9 N -0.113 5.113 10 C 0.021 3.979 11 C -0.119 4.119 12 C -0.127 4.127 13 C -0.148 4.148 14 C -0.132 4.132 15 C -0.149 4.149 16 C -0.126 4.126 17 C 0.188 3.812 18 O -0.448 6.448 19 C -0.310 4.310 20 F -0.131 7.131 21 F -0.128 7.128 22 S 2.709 3.291 23 O -0.870 6.870 24 O -0.888 6.888 25 F -0.440 7.440 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.141 0.859 30 H 0.164 0.836 31 H 0.171 0.829 32 H 0.159 0.841 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.073 -3.071 4.091 8.729 hybrid contribution -1.175 1.297 -0.476 1.814 sum 5.898 -1.774 3.615 7.142 Atomic orbital electron populations 1.69945 1.07938 1.30481 1.38941 1.25780 0.95089 1.00959 0.92925 0.86575 0.81509 0.80444 0.79967 1.19436 1.18426 1.16935 1.19054 0.95177 0.99362 1.37758 0.89360 1.43719 1.09904 1.43128 1.14594 1.20877 1.02479 0.93954 0.80569 1.20107 0.94524 0.99994 0.97303 1.21310 0.98576 0.96422 0.96408 1.21446 0.98431 0.97859 0.97039 1.21513 0.92071 0.99494 1.00138 1.21397 1.00388 0.96483 0.96638 1.21171 0.96035 0.98549 0.96810 1.20251 0.85722 0.88600 0.86649 1.90760 1.25109 1.66010 1.62943 1.33983 1.09073 0.91169 0.96739 1.93109 1.60466 1.62789 1.96750 1.93144 1.94386 1.63285 1.61990 1.06972 0.74025 0.72255 0.75803 1.93786 1.71504 1.67204 1.54498 1.93783 1.84287 1.69955 1.40758 1.93638 1.77523 1.77416 1.95380 0.89947 0.89874 0.89310 0.85887 0.83558 0.82885 0.84142 0.87290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.37 13.96 21.67 0.30 -42.06 16 2 C 0.06 3.15 4.96 84.93 0.42 3.57 16 3 Si 0.89 36.89 26.45 68.60 1.81 38.70 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 6 H -0.25 -9.81 6.13 99.48 0.61 -9.20 16 7 C -0.39 -19.24 8.10 84.04 0.68 -18.56 16 8 H 0.09 4.82 6.35 -2.91 -0.02 4.81 16 9 N -0.40 -18.21 2.08 -639.59 -1.33 -19.54 16 10 C 0.14 5.84 3.72 85.63 0.32 6.16 16 11 C -0.12 -4.52 5.40 -19.87 -0.11 -4.63 16 12 C -0.11 -3.74 9.32 22.27 0.21 -3.53 16 13 C -0.13 -3.66 10.05 22.27 0.22 -3.43 16 14 C -0.11 -2.95 10.05 22.27 0.22 -2.73 16 15 C -0.13 -3.88 10.05 22.27 0.22 -3.66 16 16 C -0.11 -3.91 9.72 22.27 0.22 -3.69 16 17 C 0.40 17.68 7.06 87.66 0.62 18.30 16 18 O -0.56 -24.25 13.76 15.84 0.22 -24.04 16 19 C -0.19 -7.59 1.98 71.24 0.14 -7.45 16 20 F -0.15 -6.05 15.31 44.97 0.69 -5.36 16 21 F -0.15 -5.82 16.22 44.97 0.73 -5.09 16 22 S 2.64 83.94 5.74 -56.49 -0.32 83.61 16 23 O -0.87 -30.41 16.81 -119.93 -2.02 -32.43 16 24 O -0.89 -28.22 18.16 -127.65 -2.32 -30.54 16 25 F -0.44 -13.06 17.85 44.97 0.80 -12.26 16 26 H 0.29 13.35 8.31 -92.71 -0.77 12.58 16 27 H 0.08 3.36 5.09 -2.39 -0.01 3.35 16 28 H 0.09 3.45 7.54 -2.39 -0.02 3.43 16 29 H 0.12 4.27 7.58 -2.91 -0.02 4.25 16 30 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 31 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 32 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 33 H 0.11 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -58.49 314.19 2.83 -55.66 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 1.09 Total: 12.99 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 3.17 Total: -19.66 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -1.03 Total: -61.60 kcal Atomic # 8 Polarization: -82.89 SS G_CDS: -4.12 Total: -87.00 kcal Atomic # 9 Polarization: -24.93 SS G_CDS: 2.22 Total: -22.71 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 1.81 Total: 38.70 kcal Atomic # 16 Polarization: 83.94 SS G_CDS: -0.32 Total: 83.61 kcal Total: -58.49 2.83 -55.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179617013.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.869 kcal (2) G-P(sol) polarization free energy of solvation -58.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds