Wall clock time and date at job start Tue Mar 31 2020 19:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21313 * 119.99662 * 2 1 4 4 C 1.46650 * 119.99883 * 180.02562 * 2 1 3 5 5 C 1.40058 * 120.24317 * 359.97438 * 4 2 1 6 6 C 1.37624 * 119.89946 * 180.25695 * 5 4 2 7 7 C 1.38698 * 120.39116 * 359.44534 * 6 5 4 8 8 C 1.50704 * 119.75142 * 180.28115 * 7 6 5 9 9 F 1.39905 * 109.47038 * 270.27442 * 8 7 6 10 10 F 1.39901 * 109.47154 * 30.27688 * 8 7 6 11 11 F 1.39904 * 109.46894 * 150.27829 * 8 7 6 12 12 C 1.37933 * 120.49708 * 0.55968 * 7 6 5 13 13 C 1.38970 * 120.08392 * 359.72354 * 12 7 6 14 14 N 1.38696 * 120.19171 * 179.97438 * 13 12 7 15 15 S 1.65602 * 120.00321 * 324.56536 * 14 13 12 16 16 O 1.42096 * 106.40332 * 181.42984 * 15 14 13 17 17 O 1.42099 * 106.40176 * 314.35157 * 15 14 13 18 18 C 1.76204 * 107.21434 * 67.88933 * 15 14 13 19 19 H 1.08003 * 119.99909 * 0.02562 * 18 15 14 20 20 C 1.37873 * 119.99792 * 179.97438 * 18 15 14 21 21 N 1.31509 * 120.00190 * 0.02562 * 20 18 15 22 22 Si 1.86804 * 119.99744 * 180.02562 * 20 18 15 23 23 H 1.48497 * 109.47334 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47120 * 120.00224 * 22 20 18 25 25 H 1.48505 * 109.46987 * 239.99912 * 22 20 18 26 26 H 1.08993 * 109.47348 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47169 * 300.00226 * 1 2 3 28 28 H 1.09009 * 109.46985 * 59.99873 * 1 2 3 29 29 H 1.07997 * 120.04742 * 359.97438 * 5 4 2 30 30 H 1.07993 * 119.80161 * 179.69816 * 6 5 4 31 31 H 1.07999 * 119.96207 * 179.74100 * 12 7 6 32 32 H 0.97004 * 119.99672 * 144.57651 * 14 13 12 33 33 H 0.97001 * 119.99932 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2403 -1.2700 -0.0006 5 6 1.5451 -2.4859 -0.0006 6 6 2.2403 -3.6736 0.0042 7 6 3.6273 -3.6749 -0.0025 8 6 4.3740 -4.9839 -0.0035 9 9 4.6060 -5.3895 1.3152 10 9 3.6124 -5.9547 -0.6629 11 9 5.5969 -4.8227 -0.6637 12 6 4.3284 -2.4870 -0.0024 13 6 3.6468 -1.2759 -0.0015 14 7 4.3495 -0.0801 -0.0009 15 16 5.7767 0.0413 0.8302 16 8 6.2247 1.3797 0.6651 17 8 5.5522 -0.5518 2.1018 18 6 6.9498 -0.9816 0.0042 19 1 6.6585 -1.5347 -0.8765 20 6 8.2399 -1.0749 0.4815 21 7 8.5948 -0.4009 1.5536 22 14 9.4838 -2.1587 -0.3946 23 1 8.8391 -2.8050 -1.5659 24 1 10.6264 -1.3290 -0.8543 25 1 9.9750 -3.2034 0.5396 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 0.4652 -2.4914 0.0003 30 1 1.7027 -4.6102 0.0092 31 1 5.4083 -2.4980 -0.0035 32 1 4.0049 0.6852 -0.4873 33 1 9.5024 -0.4669 1.8896 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192980413.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:17 Heat of formation + Delta-G solvation = -245.249739 kcal Electronic energy + Delta-G solvation = -27924.396921 eV Core-core repulsion = 23241.100978 eV Total energy + Delta-G solvation = -4683.295943 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.043 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -50.00797 -47.53923 -47.43143 -40.35937 -38.30674 -35.51367 -34.91382 -34.19921 -33.28332 -32.65673 -29.80885 -29.05405 -26.66245 -26.09281 -23.00874 -22.41230 -20.23101 -19.11004 -18.73913 -18.32862 -18.22119 -17.74993 -16.64492 -16.48244 -16.21424 -15.54188 -15.06032 -14.89318 -14.59714 -14.38632 -14.22712 -14.15865 -13.92505 -13.88911 -13.64439 -13.60162 -13.49025 -13.46398 -12.97646 -12.36514 -12.20047 -12.15252 -12.05303 -11.68844 -11.31403 -11.16476 -10.94188 -10.69027 -10.60328 -10.48217 -10.41862 -9.62641 -9.37580 -9.25454 -8.99152 -8.12140 -6.85781 -5.52556 0.38404 1.31050 1.96351 2.24795 2.74193 3.00323 3.09237 3.16768 3.53856 3.74805 3.93114 4.01551 4.10062 4.38687 4.48842 4.54762 4.64978 4.84934 5.02916 5.24957 5.26586 5.27091 5.37672 5.52590 5.63069 5.76355 6.00195 6.05298 6.13785 6.25106 6.54993 6.75134 7.15850 7.41081 7.67824 7.74586 8.71117 10.08568 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.009614 B = 0.007168 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.856150 B = 3905.042310 C = 6309.450482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.396 3.604 3 O -0.455 6.455 4 C -0.197 4.197 5 C -0.051 4.051 6 C -0.126 4.126 7 C -0.118 4.118 8 C 0.506 3.494 9 F -0.171 7.171 10 F -0.179 7.179 11 F -0.169 7.169 12 C -0.139 4.139 13 C 0.264 3.736 14 N -1.053 6.053 15 S 2.691 3.309 16 O -0.987 6.987 17 O -0.986 6.986 18 C -1.026 5.026 19 H 0.112 0.888 20 C 0.137 3.863 21 N -0.837 5.837 22 Si 0.919 3.081 23 H -0.257 1.257 24 H -0.269 1.269 25 H -0.267 1.267 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.145 0.855 30 H 0.140 0.860 31 H 0.180 0.820 32 H 0.427 0.573 33 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.610 -8.194 -5.274 17.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.275 3.725 3 O -0.330 6.330 4 C -0.203 4.203 5 C -0.069 4.069 6 C -0.145 4.145 7 C -0.120 4.120 8 C 0.452 3.548 9 F -0.153 7.153 10 F -0.161 7.161 11 F -0.150 7.150 12 C -0.160 4.160 13 C 0.161 3.839 14 N -0.796 5.796 15 S 2.792 3.208 16 O -0.978 6.978 17 O -0.976 6.976 18 C -1.159 5.159 19 H 0.130 0.870 20 C -0.083 4.083 21 N -0.465 5.465 22 Si 0.742 3.258 23 H -0.181 1.181 24 H -0.194 1.194 25 H -0.192 1.192 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.163 0.837 30 H 0.157 0.843 31 H 0.197 0.803 32 H 0.267 0.733 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.910 -7.059 -4.254 16.168 hybrid contribution 0.842 -0.887 -1.008 1.585 sum -13.068 -7.947 -5.262 16.175 Atomic orbital electron populations 1.22210 0.93438 1.04777 1.05009 1.22267 0.91734 0.87257 0.71249 1.90468 1.71580 1.34316 1.36685 1.20557 0.92769 0.95859 1.11134 1.21210 0.99965 0.90197 0.95537 1.20689 0.91826 0.99312 1.02712 1.19925 0.94830 0.91733 1.05536 1.18284 0.77653 0.84715 0.74138 1.93248 1.94683 1.91595 1.35729 1.93167 1.75720 1.65925 1.81245 1.93248 1.45341 1.95526 1.80896 1.21859 1.04296 0.89802 1.00009 1.17372 0.89926 0.86140 0.90512 1.54501 1.42179 1.17041 1.65862 1.01463 0.71145 0.74679 0.73514 1.93408 1.78842 1.38907 1.86610 1.93420 1.84821 1.79080 1.40283 1.30555 1.11026 1.46597 1.27706 0.87033 1.24738 0.97890 0.92894 0.92799 1.69885 1.21909 1.35411 1.19329 0.86126 0.79609 0.79795 0.80270 1.18073 1.19362 1.19227 0.89719 0.88672 0.88727 0.83716 0.84267 0.80271 0.73299 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.59 10.19 36.01 0.37 -1.22 16 2 C 0.40 5.40 7.21 -30.91 -0.22 5.18 16 3 O -0.45 -7.91 14.67 5.53 0.08 -7.83 16 4 C -0.20 -2.90 5.88 -104.91 -0.62 -3.52 16 5 C -0.05 -0.55 9.44 -39.12 -0.37 -0.92 16 6 C -0.13 -1.49 9.37 -39.64 -0.37 -1.86 16 7 C -0.12 -1.82 5.46 -104.56 -0.57 -2.39 16 8 C 0.51 7.67 3.36 36.01 0.12 7.79 16 9 F -0.17 -2.73 17.30 2.25 0.04 -2.69 16 10 F -0.18 -2.32 16.45 2.25 0.04 -2.28 16 11 F -0.17 -2.84 16.43 2.25 0.04 -2.80 16 12 C -0.14 -2.61 8.36 -39.42 -0.33 -2.94 16 13 C 0.26 4.97 6.16 -83.57 -0.51 4.45 16 14 N -1.05 -22.42 5.06 32.58 0.16 -22.26 16 15 S 2.69 71.82 4.66 -107.50 -0.50 71.32 16 16 O -0.99 -29.15 18.02 -57.17 -1.03 -30.18 16 17 O -0.99 -28.61 17.49 -57.17 -1.00 -29.61 16 18 C -1.03 -27.11 7.64 30.60 0.23 -26.88 16 19 H 0.11 2.65 6.75 -52.48 -0.35 2.30 16 20 C 0.14 3.68 5.46 -17.82 -0.10 3.59 16 21 N -0.84 -23.93 13.19 55.43 0.73 -23.20 16 22 Si 0.92 20.04 29.54 -169.99 -5.02 15.02 16 23 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 26 H 0.08 0.45 5.60 -51.93 -0.29 0.16 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 29 H 0.15 0.91 5.92 -52.49 -0.31 0.60 16 30 H 0.14 1.21 7.59 -52.49 -0.40 0.81 16 31 H 0.18 3.77 3.91 -52.49 -0.21 3.56 16 32 H 0.43 8.45 6.57 -34.47 -0.23 8.22 16 33 H 0.29 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 313.60 15.07 4.73 4.73 Total: -1.00 -34.79 313.60 -5.87 -40.66 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -1.77 Total: 7.85 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -2.37 Total: -18.71 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.90 Total: -45.46 kcal Atomic # 8 Polarization: -65.67 SS G_CDS: -1.95 Total: -67.62 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 0.11 Total: -7.78 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 71.82 SS G_CDS: -0.50 Total: 71.32 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.79 -5.87 -40.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980413.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.586 kcal (2) G-P(sol) polarization free energy of solvation -34.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds