Wall clock time and date at job start Tue Mar 31 2020 19:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21313 * 119.99662 * 2 1 4 4 C 1.46650 * 119.99883 * 180.02562 * 2 1 3 5 5 C 1.40058 * 120.24317 * 359.97438 * 4 2 1 6 6 C 1.37624 * 119.89946 * 180.25695 * 5 4 2 7 7 C 1.38698 * 120.39116 * 359.44534 * 6 5 4 8 8 C 1.50704 * 119.75142 * 180.28115 * 7 6 5 9 9 F 1.39905 * 109.47038 * 270.27442 * 8 7 6 10 10 F 1.39901 * 109.47154 * 30.27688 * 8 7 6 11 11 F 1.39904 * 109.46894 * 150.27829 * 8 7 6 12 12 C 1.37933 * 120.49708 * 0.55968 * 7 6 5 13 13 C 1.38970 * 120.08392 * 359.72354 * 12 7 6 14 14 N 1.38696 * 120.19171 * 179.97438 * 13 12 7 15 15 S 1.65602 * 120.00321 * 324.56536 * 14 13 12 16 16 O 1.42096 * 106.40332 * 181.42984 * 15 14 13 17 17 O 1.42099 * 106.40176 * 314.35157 * 15 14 13 18 18 C 1.76204 * 107.21434 * 67.88933 * 15 14 13 19 19 H 1.08003 * 119.99909 * 0.02562 * 18 15 14 20 20 C 1.37873 * 119.99792 * 179.97438 * 18 15 14 21 21 N 1.31509 * 120.00190 * 0.02562 * 20 18 15 22 22 Si 1.86804 * 119.99744 * 180.02562 * 20 18 15 23 23 H 1.48497 * 109.47334 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47120 * 120.00224 * 22 20 18 25 25 H 1.48505 * 109.46987 * 239.99912 * 22 20 18 26 26 H 1.08993 * 109.47348 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47169 * 300.00226 * 1 2 3 28 28 H 1.09009 * 109.46985 * 59.99873 * 1 2 3 29 29 H 1.07997 * 120.04742 * 359.97438 * 5 4 2 30 30 H 1.07993 * 119.80161 * 179.69816 * 6 5 4 31 31 H 1.07999 * 119.96207 * 179.74100 * 12 7 6 32 32 H 0.97004 * 119.99672 * 144.57651 * 14 13 12 33 33 H 0.97001 * 119.99932 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2403 -1.2700 -0.0006 5 6 1.5451 -2.4859 -0.0006 6 6 2.2403 -3.6736 0.0042 7 6 3.6273 -3.6749 -0.0025 8 6 4.3740 -4.9839 -0.0035 9 9 4.6060 -5.3895 1.3152 10 9 3.6124 -5.9547 -0.6629 11 9 5.5969 -4.8227 -0.6637 12 6 4.3284 -2.4870 -0.0024 13 6 3.6468 -1.2759 -0.0015 14 7 4.3495 -0.0801 -0.0009 15 16 5.7767 0.0413 0.8302 16 8 6.2247 1.3797 0.6651 17 8 5.5522 -0.5518 2.1018 18 6 6.9498 -0.9816 0.0042 19 1 6.6585 -1.5347 -0.8765 20 6 8.2399 -1.0749 0.4815 21 7 8.5948 -0.4009 1.5536 22 14 9.4838 -2.1587 -0.3946 23 1 8.8391 -2.8050 -1.5659 24 1 10.6264 -1.3290 -0.8543 25 1 9.9750 -3.2034 0.5396 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 0.4652 -2.4914 0.0003 30 1 1.7027 -4.6102 0.0092 31 1 5.4083 -2.4980 -0.0035 32 1 4.0049 0.6852 -0.4873 33 1 9.5024 -0.4669 1.8896 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192980413.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:16 Heat of formation + Delta-G solvation = -272.212504 kcal Electronic energy + Delta-G solvation = -27925.566114 eV Core-core repulsion = 23241.100978 eV Total energy + Delta-G solvation = -4684.465137 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.043 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -51.20534 -48.70773 -48.66862 -41.52601 -39.47073 -37.66067 -36.43175 -36.34419 -35.33007 -33.76625 -30.72838 -30.30506 -28.55101 -27.39642 -24.13423 -23.67727 -21.55152 -20.79414 -20.17039 -19.61759 -19.52896 -19.31652 -18.39422 -17.79848 -17.61109 -17.09212 -16.60865 -16.08084 -16.04805 -15.85963 -15.64927 -15.55726 -15.18637 -15.14202 -15.04311 -14.82067 -14.77845 -14.52515 -14.25512 -14.09288 -13.66224 -13.16572 -13.08734 -12.97729 -12.95521 -12.83450 -12.74993 -12.67712 -12.46944 -12.33472 -12.03102 -11.34244 -11.05485 -10.72902 -10.38730 -9.48090 -8.87852 -7.63812 -0.76324 -0.07077 0.22202 1.17858 1.27851 1.29738 1.47779 1.55239 2.11945 2.41109 2.46280 2.52666 2.64423 2.99754 3.04680 3.35124 3.46848 3.62388 3.90851 3.97520 4.05272 4.15526 4.33744 4.41007 4.62206 4.73206 4.88982 4.92435 5.02997 5.10165 5.17269 5.33045 5.56357 5.73582 6.01526 6.51138 6.63699 8.09796 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.009614 B = 0.007168 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.856150 B = 3905.042310 C = 6309.450482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.390 3.610 3 O -0.504 6.504 4 C -0.199 4.199 5 C -0.021 4.021 6 C -0.105 4.105 7 C -0.126 4.126 8 C 0.508 3.492 9 F -0.179 7.179 10 F -0.161 7.161 11 F -0.183 7.183 12 C -0.173 4.173 13 C 0.215 3.785 14 N -1.049 6.049 15 S 2.698 3.302 16 O -1.032 7.032 17 O -1.023 7.023 18 C -1.032 5.032 19 H 0.129 0.871 20 C 0.077 3.923 21 N -0.887 5.887 22 Si 0.984 3.016 23 H -0.244 1.244 24 H -0.255 1.255 25 H -0.255 1.255 26 H 0.123 0.877 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.210 0.790 30 H 0.186 0.814 31 H 0.147 0.853 32 H 0.429 0.571 33 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.978 -10.856 -6.610 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.272 3.728 3 O -0.383 6.383 4 C -0.204 4.204 5 C -0.039 4.039 6 C -0.123 4.123 7 C -0.129 4.129 8 C 0.454 3.546 9 F -0.160 7.160 10 F -0.143 7.143 11 F -0.165 7.165 12 C -0.195 4.195 13 C 0.114 3.886 14 N -0.797 5.797 15 S 2.801 3.199 16 O -1.022 7.022 17 O -1.013 7.013 18 C -1.166 5.166 19 H 0.147 0.853 20 C -0.137 4.137 21 N -0.517 5.517 22 Si 0.801 3.199 23 H -0.167 1.167 24 H -0.179 1.179 25 H -0.179 1.179 26 H 0.141 0.859 27 H 0.123 0.877 28 H 0.130 0.870 29 H 0.226 0.774 30 H 0.203 0.797 31 H 0.164 0.836 32 H 0.271 0.729 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.321 -9.737 -5.584 20.640 hybrid contribution 1.663 -0.158 -0.612 1.779 sum -15.658 -9.895 -6.196 19.531 Atomic orbital electron populations 1.22283 0.88041 1.07750 1.06226 1.23213 0.94450 0.85886 0.69206 1.90462 1.73086 1.35791 1.38936 1.21064 0.91093 0.98509 1.09752 1.21919 1.02688 0.87764 0.91535 1.21323 0.90112 1.01726 0.99183 1.20087 0.96551 0.90369 1.05855 1.18280 0.77349 0.85141 0.73840 1.93233 1.94748 1.91680 1.36334 1.93197 1.75053 1.65195 1.80812 1.93216 1.46454 1.95657 1.81153 1.21616 1.03143 0.91474 1.03238 1.17763 0.91907 0.84762 0.94180 1.53694 1.41057 1.18637 1.66357 1.00835 0.71954 0.73748 0.73412 1.93333 1.80514 1.41083 1.87287 1.93348 1.85772 1.79345 1.42862 1.30790 1.11266 1.46438 1.28142 0.85334 1.25975 1.00170 0.94168 0.93398 1.69975 1.23082 1.37424 1.21234 0.85179 0.77031 0.78115 0.79526 1.16695 1.17858 1.17941 0.85861 0.87689 0.86952 0.77370 0.79726 0.83563 0.72905 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.05 10.19 71.24 0.73 -1.33 16 2 C 0.39 9.83 7.21 27.89 0.20 10.03 16 3 O -0.50 -17.74 14.67 -3.13 -0.05 -17.79 16 4 C -0.20 -5.39 5.88 -20.05 -0.12 -5.51 16 5 C -0.02 -0.34 9.44 22.57 0.21 -0.13 16 6 C -0.10 -1.95 9.37 22.23 0.21 -1.74 16 7 C -0.13 -3.69 5.46 -19.83 -0.11 -3.80 16 8 C 0.51 14.67 3.36 71.24 0.24 14.91 16 9 F -0.18 -5.54 17.30 44.97 0.78 -4.76 16 10 F -0.16 -3.67 16.45 44.97 0.74 -2.94 16 11 F -0.18 -6.16 16.43 44.97 0.74 -5.42 16 12 C -0.17 -6.66 8.36 22.37 0.19 -6.47 16 13 C 0.21 8.23 6.16 38.82 0.24 8.46 16 14 N -1.05 -47.37 5.06 -50.85 -0.26 -47.63 16 15 S 2.70 153.53 4.66 -56.49 -0.26 153.26 16 16 O -1.03 -65.21 18.02 -128.00 -2.31 -67.52 16 17 O -1.02 -63.37 17.49 -128.00 -2.24 -65.61 16 18 C -1.03 -57.26 7.64 67.73 0.52 -56.75 16 19 H 0.13 6.43 6.75 -2.91 -0.02 6.41 16 20 C 0.08 4.31 5.46 84.65 0.46 4.77 16 21 N -0.89 -53.05 13.19 21.44 0.28 -52.77 16 22 Si 0.98 41.52 29.54 68.60 2.03 43.55 16 23 H -0.24 -9.66 7.11 99.48 0.71 -8.95 16 24 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 25 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 26 H 0.12 0.34 5.60 -2.39 -0.01 0.32 16 27 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.21 0.71 5.92 -2.91 -0.02 0.70 16 30 H 0.19 1.86 7.59 -2.91 -0.02 1.84 16 31 H 0.15 6.53 3.91 -2.91 -0.01 6.52 16 32 H 0.43 18.27 6.57 -96.74 -0.64 17.63 16 33 H 0.30 16.14 8.31 -92.71 -0.77 15.37 16 Total: -1.00 -85.01 313.60 2.81 -82.19 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.59 Total: 22.98 kcal Atomic # 6 Polarization: -40.32 SS G_CDS: 2.77 Total: -37.55 kcal Atomic # 7 Polarization: -100.43 SS G_CDS: 0.03 Total: -100.40 kcal Atomic # 8 Polarization: -146.33 SS G_CDS: -4.59 Total: -150.92 kcal Atomic # 9 Polarization: -15.37 SS G_CDS: 2.26 Total: -13.11 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 16 Polarization: 153.53 SS G_CDS: -0.26 Total: 153.26 kcal Total: -85.01 2.81 -82.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980413.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.019 kcal (2) G-P(sol) polarization free energy of solvation -85.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -275.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -272.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds