Wall clock time and date at job start Tue Mar 31 2020 19:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21309 * 120.00473 * 2 1 4 4 C 1.46763 * 119.99691 * 180.02562 * 2 1 3 5 5 C 1.40124 * 120.09406 * 0.26311 * 4 2 1 6 6 C 1.36526 * 119.89986 * 180.27643 * 5 4 2 7 7 C 1.39326 * 120.09712 * 359.45959 * 6 5 4 8 8 N 1.38888 * 119.90709 * 180.29582 * 7 6 5 9 9 S 1.65598 * 120.00283 * 326.64644 * 8 7 6 10 10 O 1.42096 * 106.40735 * 181.37555 * 9 8 7 11 11 O 1.42099 * 106.40186 * 314.29786 * 9 8 7 12 12 C 1.76200 * 107.21713 * 67.83273 * 9 8 7 13 13 H 1.08003 * 120.00015 * 0.02562 * 12 9 8 14 14 C 1.37878 * 120.00028 * 179.97438 * 12 9 8 15 15 N 1.31506 * 120.00014 * 0.02562 * 14 12 9 16 16 Si 1.86807 * 120.00024 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.46973 * 90.00179 * 16 14 12 18 18 H 1.48496 * 109.47139 * 210.00392 * 16 14 12 19 19 H 1.48504 * 109.47073 * 330.00553 * 16 14 12 20 20 C 1.39297 * 120.19063 * 0.27597 * 7 6 5 21 21 C 1.50698 * 119.95259 * 180.02562 * 20 7 6 22 22 F 1.39901 * 109.47124 * 179.97438 * 21 20 7 23 23 F 1.39902 * 109.46985 * 299.99856 * 21 20 7 24 24 F 1.39898 * 109.47647 * 59.99741 * 21 20 7 25 25 C 1.36558 * 120.09594 * 359.97438 * 20 7 6 26 26 H 1.09004 * 109.47335 * 240.00172 * 1 2 3 27 27 H 1.09008 * 109.46892 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47315 * 120.00256 * 1 2 3 29 29 H 1.08007 * 120.05126 * 0.02562 * 5 4 2 30 30 H 1.08005 * 119.95091 * 179.73601 * 6 5 4 31 31 H 0.97007 * 120.00127 * 146.64834 * 8 7 6 32 32 H 0.97003 * 120.00619 * 179.97438 * 15 14 12 33 33 H 1.08006 * 120.04909 * 179.97438 * 25 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0505 0.0000 4 6 2.2407 -1.2710 -0.0006 5 6 1.5420 -2.4857 -0.0067 6 6 2.2286 -3.6657 -0.0015 7 6 3.6218 -3.6635 -0.0015 8 7 4.3163 -4.8663 -0.0024 9 16 3.6929 -6.1830 0.7851 10 8 4.6403 -7.2302 0.6281 11 8 3.2498 -5.7194 2.0532 12 6 2.2497 -6.6816 -0.0943 13 1 1.9389 -6.1381 -0.9744 14 6 1.5179 -7.7662 0.3404 15 7 1.8966 -8.4282 1.4117 16 14 -0.0117 -8.2953 -0.5923 17 1 0.3624 -9.2814 -1.6377 18 1 -0.9767 -8.9156 0.3507 19 1 -0.6367 -7.1094 -1.2314 20 6 4.3204 -2.4583 -0.0010 21 6 5.8274 -2.4622 -0.0016 22 9 6.2971 -1.1444 -0.0015 23 9 6.2924 -3.1236 1.1402 24 9 6.2917 -3.1221 -1.1444 25 6 3.6416 -1.2734 -0.0010 26 1 -0.3634 -0.5138 0.8900 27 1 -0.3633 1.0278 -0.0005 28 1 -0.3634 -0.5139 -0.8900 29 1 0.4620 -2.4883 -0.0114 30 1 1.6909 -4.6024 -0.0019 31 1 5.1665 -4.9352 -0.4643 32 1 1.3816 -9.1911 1.7178 33 1 4.1840 -0.3394 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192982136.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:11 Heat of formation + Delta-G solvation = -278.333036 kcal Electronic energy + Delta-G solvation = -27715.040752 eV Core-core repulsion = 23030.310209 eV Total energy + Delta-G solvation = -4684.730543 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.043 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.36693 -48.86896 -48.81276 -41.37874 -39.78279 -37.63018 -36.39575 -36.27489 -35.24935 -33.58680 -31.64873 -29.92123 -28.42843 -26.99319 -24.70220 -23.65871 -21.37631 -20.93219 -19.99915 -19.84890 -19.67537 -19.22034 -18.41596 -18.27995 -17.26799 -16.99106 -16.59027 -16.14992 -15.97530 -15.88994 -15.69842 -15.66108 -15.25032 -15.15146 -15.11884 -14.96628 -14.90561 -14.51101 -14.19704 -13.97480 -13.74204 -13.26489 -13.00902 -12.96355 -12.93122 -12.92561 -12.70806 -12.64092 -12.49832 -12.23088 -11.92040 -11.24691 -10.97540 -10.81878 -10.52843 -9.55359 -8.79897 -7.56637 -0.58456 -0.07359 -0.03660 1.26063 1.40879 1.42022 1.46217 1.58852 2.18864 2.41956 2.46843 2.55770 2.57973 2.77922 3.18747 3.22251 3.47211 3.56612 3.80453 3.94581 4.03687 4.15292 4.30459 4.46606 4.69841 4.77916 4.80182 4.94334 4.97922 5.11760 5.23108 5.34484 5.49927 5.81352 5.82865 6.54988 6.71355 8.17444 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.005413 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.153240 B = 5171.281039 C = 7029.348813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.407 3.593 3 O -0.502 6.502 4 C -0.213 4.213 5 C 0.017 3.983 6 C -0.206 4.206 7 C 0.255 3.745 8 N -1.061 6.061 9 S 2.693 3.307 10 O -1.030 7.030 11 O -1.015 7.015 12 C -1.025 5.025 13 H 0.141 0.859 14 C 0.075 3.925 15 N -0.889 5.889 16 Si 0.994 3.006 17 H -0.262 1.262 18 H -0.267 1.267 19 H -0.230 1.230 20 C -0.248 4.248 21 C 0.512 3.488 22 F -0.168 7.168 23 F -0.183 7.183 24 F -0.176 7.176 25 C 0.007 3.993 26 H 0.117 0.883 27 H 0.088 0.912 28 H 0.122 0.878 29 H 0.193 0.807 30 H 0.168 0.832 31 H 0.424 0.576 32 H 0.302 0.698 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.361 13.067 -6.410 15.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.289 3.711 3 O -0.381 6.381 4 C -0.216 4.216 5 C -0.001 4.001 6 C -0.227 4.227 7 C 0.154 3.846 8 N -0.803 5.803 9 S 2.797 3.203 10 O -1.020 7.020 11 O -1.005 7.005 12 C -1.159 5.159 13 H 0.159 0.841 14 C -0.139 4.139 15 N -0.520 5.520 16 Si 0.812 3.188 17 H -0.187 1.187 18 H -0.191 1.191 19 H -0.152 1.152 20 C -0.254 4.254 21 C 0.458 3.542 22 F -0.149 7.149 23 F -0.164 7.164 24 F -0.157 7.157 25 C -0.012 4.012 26 H 0.136 0.864 27 H 0.107 0.893 28 H 0.141 0.859 29 H 0.210 0.790 30 H 0.185 0.815 31 H 0.260 0.740 32 H 0.112 0.888 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.677 13.017 -5.367 14.837 hybrid contribution 0.601 -0.857 -0.625 1.219 sum -4.076 12.160 -5.992 14.156 Atomic orbital electron populations 1.22333 0.89643 1.06322 1.07028 1.22790 0.93545 0.85765 0.69027 1.90548 1.73334 1.35157 1.39073 1.20669 0.93126 0.96459 1.11317 1.21628 1.02734 0.88528 0.87247 1.21867 0.91243 1.03564 1.06017 1.17651 0.92427 0.83990 0.90541 1.53994 1.33732 1.24453 1.68162 1.01105 0.75474 0.70024 0.73722 1.93354 1.66540 1.54666 1.87437 1.93375 1.83129 1.81081 1.42873 1.30685 1.30557 1.26147 1.28553 0.84086 1.26057 1.01734 0.92397 0.93735 1.69985 1.40833 1.18833 1.22338 0.85060 0.75230 0.80257 0.78291 1.18704 1.19095 1.15192 1.19513 0.90933 0.95149 1.19798 1.18164 0.88630 0.73780 0.73655 1.93169 1.90117 1.35413 1.96214 1.93232 1.90466 1.81211 1.51527 1.93180 1.90511 1.81034 1.51003 1.20951 0.94763 0.96420 0.89069 0.86438 0.89266 0.85933 0.78959 0.81465 0.73967 0.88783 0.82823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.04 8.92 71.24 0.64 -1.41 16 2 C 0.41 8.25 7.21 27.92 0.20 8.45 16 3 O -0.50 -13.80 17.07 -3.12 -0.05 -13.85 16 4 C -0.21 -4.95 5.87 -20.14 -0.12 -5.06 16 5 C 0.02 0.37 9.41 22.33 0.21 0.58 16 6 C -0.21 -6.43 8.86 22.13 0.20 -6.23 16 7 C 0.25 8.95 6.08 38.54 0.23 9.18 16 8 N -1.06 -42.25 5.16 -51.36 -0.26 -42.51 16 9 S 2.69 136.96 4.63 -56.49 -0.26 136.70 16 10 O -1.03 -59.46 18.02 -128.00 -2.31 -61.77 16 11 O -1.01 -56.86 17.42 -128.00 -2.23 -59.09 16 12 C -1.02 -49.26 7.57 67.73 0.51 -48.75 16 13 H 0.14 5.74 6.86 -2.91 -0.02 5.72 16 14 C 0.08 3.72 5.46 84.66 0.46 4.18 16 15 N -0.89 -48.75 13.19 21.45 0.28 -48.47 16 16 Si 0.99 35.69 29.54 68.60 2.03 37.71 16 17 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 18 H -0.27 -9.19 7.11 99.48 0.71 -8.49 16 19 H -0.23 -7.11 7.11 99.48 0.71 -6.40 16 20 C -0.25 -7.76 5.35 -20.00 -0.11 -7.86 16 21 C 0.51 15.84 2.86 71.24 0.20 16.05 16 22 F -0.17 -4.68 15.95 44.97 0.72 -3.96 16 23 F -0.18 -6.34 16.88 44.97 0.76 -5.58 16 24 F -0.18 -5.26 15.83 44.97 0.71 -4.55 16 25 C 0.01 0.18 8.93 22.33 0.20 0.38 16 26 H 0.12 0.82 8.09 -2.39 -0.02 0.80 16 27 H 0.09 0.91 8.12 -2.38 -0.02 0.89 16 28 H 0.12 0.68 8.07 -2.39 -0.02 0.66 16 29 H 0.19 2.29 7.03 -2.91 -0.02 2.27 16 30 H 0.17 5.67 4.42 -2.91 -0.01 5.66 16 31 H 0.42 15.33 7.06 -96.74 -0.68 14.65 16 32 H 0.30 14.84 8.31 -92.71 -0.77 14.07 16 33 H 0.15 3.92 6.70 -2.91 -0.02 3.90 16 Total: -1.00 -73.21 316.20 2.55 -70.66 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.54 Total: 25.20 kcal Atomic # 6 Polarization: -33.12 SS G_CDS: 2.63 Total: -30.49 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: 0.02 Total: -90.98 kcal Atomic # 8 Polarization: -130.12 SS G_CDS: -4.59 Total: -134.71 kcal Atomic # 9 Polarization: -16.27 SS G_CDS: 2.19 Total: -14.09 kcal Atomic # 14 Polarization: 35.69 SS G_CDS: 2.03 Total: 37.71 kcal Atomic # 16 Polarization: 136.96 SS G_CDS: -0.26 Total: 136.70 kcal Total: -73.21 2.55 -70.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192982136.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.670 kcal (2) G-P(sol) polarization free energy of solvation -73.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -280.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -278.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds