Wall clock time and date at job start Tue Mar 31 2020 19:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48503 * 109.47170 * 239.99844 * 3 2 1 5 5 H 1.48498 * 109.46966 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47384 * 119.99916 * 3 2 1 7 7 C 1.37880 * 120.00269 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00173 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99539 * 0.02562 * 7 2 1 10 10 O 1.42099 * 106.40541 * 66.45708 * 9 7 2 11 11 O 1.42105 * 106.40374 * 293.53744 * 9 7 2 12 12 N 1.65604 * 107.21805 * 179.97438 * 9 7 2 13 13 C 1.46505 * 119.99542 * 65.00295 * 12 9 7 14 14 C 1.50698 * 109.47044 * 165.00177 * 13 12 9 15 15 O 1.21262 * 120.00004 * 359.97438 * 14 13 12 16 16 C 1.47168 * 120.00520 * 179.97438 * 14 13 12 17 17 C 1.39851 * 120.17582 * 180.02562 * 16 14 13 18 18 C 1.37885 * 119.82281 * 180.29957 * 17 16 14 19 19 C 1.38402 * 120.17407 * 359.43610 * 18 17 16 20 20 C 1.50696 * 119.82806 * 180.28065 * 19 18 17 21 21 F 1.39893 * 109.47571 * 270.27660 * 20 19 18 22 22 F 1.39901 * 109.46831 * 30.28055 * 20 19 18 23 23 F 1.39904 * 109.47339 * 150.27801 * 20 19 18 24 24 C 1.38410 * 120.34833 * 0.56494 * 19 18 17 25 25 C 1.37892 * 120.16928 * 359.71584 * 24 19 18 26 26 H 0.97006 * 120.00067 * 0.02562 * 1 2 3 27 27 H 0.96994 * 120.00577 * 244.99837 * 12 9 7 28 28 H 1.08994 * 109.47666 * 44.99660 * 13 12 9 29 29 H 1.09003 * 109.46872 * 284.99756 * 13 12 9 30 30 H 1.08002 * 120.08457 * 0.02562 * 17 16 14 31 31 H 1.07998 * 119.91348 * 179.72125 * 18 17 16 32 32 H 1.07999 * 119.91764 * 179.69813 * 24 19 18 33 33 H 1.08001 * 120.08323 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0010 9 16 1.1234 -2.7199 0.0005 10 8 0.4517 -2.7955 -1.2494 11 8 0.4508 -2.7950 1.2501 12 7 2.2482 -3.9354 0.0005 13 6 3.1392 -4.1088 1.1505 14 6 3.7945 -5.4639 1.0783 15 8 3.5419 -6.2113 0.1574 16 6 4.7412 -5.8803 2.1254 17 6 5.3518 -7.1368 2.0617 18 6 6.2329 -7.5220 3.0499 19 6 6.5224 -6.6642 4.0968 20 6 7.4913 -7.0907 5.1692 21 9 6.7960 -7.7413 6.1941 22 9 8.4386 -7.9625 4.6219 23 9 8.1389 -5.9640 5.6875 24 6 5.9222 -5.4190 4.1669 25 6 5.0345 -5.0215 3.1895 26 1 -0.4850 0.8401 -0.0004 27 1 2.3171 -4.5325 -0.7607 28 1 2.5621 -4.0329 2.0720 29 1 3.9053 -3.3335 1.1367 30 1 5.1304 -7.8055 1.2429 31 1 6.7018 -8.4938 3.0045 32 1 6.1494 -4.7571 4.9895 33 1 4.5666 -4.0497 3.2458 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192994729.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:54 Heat of formation + Delta-G solvation = -277.691772 kcal Electronic energy + Delta-G solvation = -25881.914621 eV Core-core repulsion = 21197.211886 eV Total energy + Delta-G solvation = -4684.702735 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.043 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.20562 -48.71570 -48.67307 -41.32974 -39.57210 -37.41671 -36.14322 -35.65401 -35.10671 -33.52200 -32.29293 -29.09660 -28.23187 -26.85755 -23.99800 -23.65035 -21.31107 -20.94853 -19.67053 -19.52093 -19.40624 -19.39546 -18.47628 -17.66106 -17.51686 -16.67983 -16.54803 -16.19990 -15.88029 -15.82526 -15.55282 -15.53600 -15.33286 -15.11719 -14.91883 -14.82042 -14.77972 -14.50591 -14.33498 -14.16949 -13.92588 -13.67341 -13.26691 -12.95104 -12.77529 -12.64020 -12.50405 -12.42792 -12.31052 -12.29171 -11.19402 -11.05352 -11.00898 -10.44155 -10.28126 -10.19135 -8.72410 -7.46309 -0.80403 0.17605 0.30758 1.05658 1.39947 1.41568 1.54547 1.57378 2.23976 2.43880 2.57507 2.62578 2.74622 2.93559 2.96781 3.36226 3.63950 3.72420 3.77308 3.95781 4.11228 4.21002 4.34786 4.36891 4.51284 4.54983 4.83887 4.87842 4.97812 5.01752 5.18675 5.31908 5.55129 5.92526 6.20118 6.31174 6.81323 8.23977 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.018384 B = 0.002651 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.687053 B =10558.941960 C =11506.847025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.992 3.008 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.242 1.242 7 C -1.036 5.036 8 H 0.129 0.871 9 S 2.721 3.279 10 O -1.046 7.046 11 O -1.036 7.036 12 N -1.123 6.123 13 C 0.064 3.936 14 C 0.403 3.597 15 O -0.468 6.468 16 C -0.144 4.144 17 C -0.067 4.067 18 C -0.081 4.081 19 C -0.161 4.161 20 C 0.512 3.488 21 F -0.179 7.179 22 F -0.177 7.177 23 F -0.176 7.176 24 C -0.080 4.080 25 C -0.069 4.069 26 H 0.299 0.701 27 H 0.415 0.585 28 H 0.122 0.878 29 H 0.131 0.869 30 H 0.148 0.852 31 H 0.160 0.840 32 H 0.165 0.835 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.523 -11.133 11.156 24.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.810 3.190 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.165 1.165 7 C -1.170 5.170 8 H 0.147 0.853 9 S 2.822 3.178 10 O -1.036 7.036 11 O -1.026 7.026 12 N -0.883 5.883 13 C -0.062 4.062 14 C 0.280 3.720 15 O -0.343 6.343 16 C -0.145 4.145 17 C -0.085 4.085 18 C -0.099 4.099 19 C -0.162 4.162 20 C 0.458 3.542 21 F -0.160 7.160 22 F -0.158 7.158 23 F -0.157 7.157 24 C -0.098 4.098 25 C -0.087 4.087 26 H 0.109 0.891 27 H 0.250 0.750 28 H 0.140 0.860 29 H 0.149 0.851 30 H 0.166 0.834 31 H 0.178 0.822 32 H 0.183 0.817 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 17.267 -11.520 10.871 23.432 hybrid contribution 0.584 0.590 -0.323 0.891 sum 17.851 -10.930 10.548 23.439 Atomic orbital electron populations 1.69993 1.08921 1.32437 1.41269 1.26027 0.95308 1.05435 0.87521 0.85133 0.78681 0.74299 0.80895 1.17802 1.19435 1.16524 1.30829 1.07487 1.11835 1.66834 0.85268 0.99921 0.72468 0.73843 0.71565 1.93319 1.74821 1.88350 1.47158 1.93310 1.74238 1.88180 1.46882 1.55347 1.55033 1.50293 1.27638 1.21844 0.95824 0.97600 0.90950 1.22730 0.78490 0.87474 0.83265 1.90508 1.56573 1.53829 1.33422 1.20599 0.99805 0.96882 0.97243 1.21506 0.93627 0.94905 0.98443 1.21091 0.96615 1.00253 0.91935 1.20388 1.00852 0.98260 0.96721 1.18264 0.79865 0.74852 0.81266 1.93239 1.79046 1.81978 1.61734 1.93202 1.66673 1.70491 1.85471 1.93209 1.82770 1.51652 1.88052 1.21219 0.94459 0.94452 0.99639 1.21833 0.95243 1.00423 0.91184 0.89133 0.75014 0.86046 0.85110 0.83400 0.82215 0.81716 0.81219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.70 13.19 21.45 0.28 -51.42 16 2 C 0.07 3.71 5.46 84.66 0.46 4.17 16 3 Si 0.99 38.74 29.54 68.60 2.03 40.76 16 4 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 5 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 6 H -0.24 -8.55 7.11 99.48 0.71 -7.84 16 7 C -1.04 -53.06 9.72 67.73 0.66 -52.40 16 8 H 0.13 5.68 7.81 -2.91 -0.02 5.65 16 9 S 2.72 140.33 5.02 -56.49 -0.28 140.05 16 10 O -1.05 -62.21 18.02 -128.00 -2.31 -64.51 16 11 O -1.04 -58.40 17.49 -128.00 -2.24 -60.64 16 12 N -1.12 -43.06 5.93 -190.79 -1.13 -44.19 16 13 C 0.06 1.82 5.32 85.63 0.46 2.28 16 14 C 0.40 10.26 7.19 28.03 0.20 10.46 16 15 O -0.47 -14.51 15.72 -2.97 -0.05 -14.56 16 16 C -0.14 -2.74 5.87 -20.15 -0.12 -2.86 16 17 C -0.07 -1.13 9.60 22.58 0.22 -0.91 16 18 C -0.08 -1.12 9.38 22.23 0.21 -0.91 16 19 C -0.16 -2.29 5.46 -19.79 -0.11 -2.39 16 20 C 0.51 7.45 3.36 71.23 0.24 7.69 16 21 F -0.18 -2.89 17.30 44.97 0.78 -2.11 16 22 F -0.18 -2.67 16.45 44.97 0.74 -1.93 16 23 F -0.18 -2.64 16.45 44.97 0.74 -1.90 16 24 C -0.08 -1.04 9.38 22.23 0.21 -0.83 16 25 C -0.07 -1.01 9.47 22.58 0.21 -0.79 16 26 H 0.30 15.56 8.31 -92.70 -0.77 14.79 16 27 H 0.41 15.29 7.70 -96.75 -0.75 14.54 16 28 H 0.12 3.28 7.70 -2.39 -0.02 3.26 16 29 H 0.13 2.89 8.09 -2.39 -0.02 2.88 16 30 H 0.15 2.41 7.65 -2.91 -0.02 2.39 16 31 H 0.16 1.56 7.60 -2.91 -0.02 1.53 16 32 H 0.17 1.44 7.59 -2.91 -0.02 1.42 16 33 H 0.17 1.83 7.05 -2.91 -0.02 1.81 16 Total: -1.00 -76.35 326.13 1.65 -74.69 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.46 Total: 22.27 kcal Atomic # 6 Polarization: -39.14 SS G_CDS: 2.64 Total: -36.50 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -0.85 Total: -95.61 kcal Atomic # 8 Polarization: -135.12 SS G_CDS: -4.59 Total: -139.71 kcal Atomic # 9 Polarization: -8.21 SS G_CDS: 2.26 Total: -5.95 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.76 kcal Atomic # 16 Polarization: 140.33 SS G_CDS: -0.28 Total: 140.05 kcal Total: -76.35 1.65 -74.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192994729.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.999 kcal (2) G-P(sol) polarization free energy of solvation -76.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -279.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -277.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds