Wall clock time and date at job start Tue Mar 31 2020 20:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00396 * 2 1 4 4 C 1.52993 * 109.46924 * 300.00142 * 3 2 1 5 5 Br 1.96600 * 109.47124 * 299.99792 * 4 3 2 6 6 C 1.52998 * 109.46808 * 179.97438 * 3 2 1 7 7 O 1.42905 * 109.46808 * 179.97438 * 6 3 2 8 8 C 1.42897 * 114.00086 * 180.02562 * 7 6 3 9 9 H 1.09004 * 110.91562 * 327.54758 * 8 7 6 10 10 C 1.55448 * 111.11758 * 203.55855 * 8 7 6 11 11 C 1.54321 * 102.96961 * 206.46102 * 10 8 7 12 12 N 1.47026 * 107.26791 * 22.19024 * 11 10 8 13 13 C 1.36941 * 125.64206 * 181.07813 * 12 11 10 14 14 H 1.08004 * 119.99539 * 179.97438 * 13 12 11 15 15 C 1.38807 * 120.00624 * 359.97438 * 13 12 11 16 16 N 1.31626 * 119.99751 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00379 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47056 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47158 * 119.99924 * 17 15 13 20 20 H 1.48494 * 109.47163 * 239.99871 * 17 15 13 21 21 C 1.47419 * 108.70576 * 1.06162 * 12 11 10 22 22 O 1.42896 * 109.46841 * 60.00136 * 3 2 1 23 23 C 1.42899 * 114.00131 * 59.99696 * 22 3 2 24 24 H 1.08998 * 109.46976 * 59.99571 * 1 2 3 25 25 H 1.08999 * 109.47585 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46865 * 300.00463 * 1 2 3 27 27 H 1.09000 * 109.47289 * 60.00004 * 4 3 2 28 28 H 1.09003 * 109.46664 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47302 * 60.00190 * 6 3 2 30 30 H 1.08998 * 109.47278 * 299.99648 * 6 3 2 31 31 H 1.08998 * 110.70855 * 88.08906 * 10 8 7 32 32 H 1.08997 * 110.70436 * 324.83654 * 10 8 7 33 33 H 1.08998 * 109.88101 * 262.77542 * 11 10 8 34 34 H 1.09000 * 109.88483 * 141.60664 * 11 10 8 35 35 H 0.96995 * 120.00037 * 179.97438 * 16 15 13 36 36 H 1.09002 * 110.36926 * 94.70918 * 21 12 11 37 37 H 1.08995 * 110.36556 * 216.92202 * 21 12 11 38 38 H 1.09003 * 109.47035 * 60.00535 * 23 22 3 39 39 H 1.09008 * 109.47180 * 179.97438 * 23 22 3 40 40 H 1.08996 * 109.47530 * 299.99910 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5589 2.0647 -1.2492 5 35 2.1389 1.0890 -2.8544 6 6 3.5355 1.1845 0.0006 7 8 4.1169 2.4899 0.0000 8 6 5.5458 2.4898 0.0000 9 1 5.9349 1.6309 0.5467 10 6 6.1060 3.8193 0.5790 11 6 7.4866 3.9383 -0.1001 12 7 7.4438 3.1217 -1.3220 13 6 8.4799 2.9439 -2.1996 14 1 8.3476 2.3213 -3.0722 15 6 9.7001 3.5637 -1.9679 16 7 9.8612 4.3229 -0.9048 17 14 11.1135 3.3205 -3.1647 18 1 10.6784 2.4293 -4.2701 19 1 11.5226 4.6350 -3.7213 20 1 12.2629 2.7043 -2.4546 21 6 6.1011 2.5259 -1.4457 22 8 1.5887 2.0146 1.1668 23 6 1.9619 1.3867 2.3950 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.4723 2.1508 -1.2492 28 1 2.0020 3.0606 -1.2489 29 1 3.8575 0.6434 -0.8891 30 1 3.8567 0.6437 0.8909 31 1 6.2132 3.7533 1.6617 32 1 5.4673 4.6587 0.3041 33 1 8.2620 3.5645 0.5685 34 1 7.6852 4.9789 -0.3565 35 1 10.7139 4.7558 -0.7427 36 1 5.4677 3.1461 -2.0800 37 1 6.1699 1.5164 -1.8508 38 1 3.0475 1.3023 2.4448 39 1 1.6057 1.9866 3.2326 40 1 1.5175 0.3927 2.4447 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224328128.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:48 Heat of formation + Delta-G solvation = -97.770250 kcal Electronic energy + Delta-G solvation = -22676.414155 eV Core-core repulsion = 19153.422925 eV Total energy + Delta-G solvation = -3522.991230 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 337.072 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.07657 -38.17192 -36.31804 -35.76007 -32.61617 -31.97422 -29.68755 -29.02552 -27.76503 -27.11926 -26.52101 -25.41984 -24.20967 -21.03120 -20.33673 -20.02417 -18.14701 -17.06278 -16.67232 -16.53758 -16.01177 -15.49903 -14.76799 -14.61134 -14.24650 -14.03025 -13.80682 -13.49868 -13.08553 -13.02222 -12.61997 -12.29048 -12.19701 -12.13562 -11.91884 -11.61945 -11.13304 -10.91094 -10.88201 -10.70573 -10.43554 -10.27430 -10.09166 -10.02896 -9.91006 -9.84960 -9.76197 -9.69713 -9.09834 -8.58675 -6.81826 -5.69755 -3.03458 1.39034 2.91766 3.41464 3.47067 3.47662 3.49559 4.20244 4.32826 4.47091 4.56361 4.96386 5.11283 5.13707 5.20198 5.22239 5.28303 5.35755 5.43118 5.46461 5.49413 5.56717 5.57436 5.67397 5.75974 5.84654 6.25108 6.30145 6.47953 6.53897 6.69045 6.73480 7.06176 7.52257 7.57476 7.62368 7.83683 8.26827 9.23332 9.83428 10.48881 11.42113 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.018456 B = 0.003668 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.721789 B = 7632.164986 C = 8800.261802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.382 6.382 3 C 0.278 3.722 4 C -0.094 4.094 5 Br -0.121 7.121 6 C 0.046 3.954 7 O -0.364 6.364 8 C 0.073 3.927 9 H 0.066 0.934 10 C -0.135 4.135 11 C 0.178 3.822 12 N -0.604 5.604 13 C -0.226 4.226 14 H 0.079 0.921 15 C -0.009 4.009 16 N -0.923 5.923 17 Si 0.912 3.088 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.291 1.291 21 C 0.120 3.880 22 O -0.381 6.381 23 C 0.032 3.968 24 H 0.046 0.954 25 H 0.090 0.910 26 H 0.050 0.950 27 H 0.106 0.894 28 H 0.128 0.872 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.252 0.748 36 H 0.029 0.971 37 H 0.037 0.963 38 H 0.050 0.950 39 H 0.088 0.912 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.603 -7.716 3.689 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.303 6.303 3 C 0.200 3.800 4 C -0.211 4.211 5 Br -0.040 7.040 6 C -0.032 4.032 7 O -0.283 6.283 8 C 0.015 3.985 9 H 0.084 0.916 10 C -0.173 4.173 11 C 0.054 3.946 12 N -0.332 5.332 13 C -0.354 4.354 14 H 0.097 0.903 15 C -0.205 4.205 16 N -0.570 5.570 17 Si 0.743 3.257 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.218 1.218 21 C -0.007 4.007 22 O -0.302 6.302 23 C -0.064 4.064 24 H 0.064 0.936 25 H 0.109 0.891 26 H 0.069 0.931 27 H 0.124 0.876 28 H 0.146 0.854 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.289 -7.796 3.099 22.882 hybrid contribution 0.716 -0.127 -0.165 0.746 sum -20.573 -7.922 2.933 22.240 Atomic orbital electron populations 1.22761 0.80192 1.03007 1.00754 1.88031 1.20770 1.27271 1.94186 1.22322 0.91928 0.80030 0.85715 1.24959 1.04791 1.02240 0.89095 1.97412 1.92150 1.77880 1.36599 1.22594 0.90187 0.87513 1.02887 1.87831 1.20755 1.24524 1.95165 1.23527 0.77886 0.98992 0.98065 0.91558 1.23022 0.99223 0.95612 0.99450 1.21174 0.89952 0.96237 0.87255 1.44357 1.07574 1.55555 1.25677 1.19118 0.89252 1.25002 1.02060 0.90342 1.24802 0.97807 0.99721 0.98149 1.69966 1.24049 1.35519 1.27516 0.86034 0.82323 0.77326 0.80042 1.20495 1.21735 1.21763 1.21904 0.88170 0.96787 0.93828 1.87996 1.78897 1.49400 1.13887 1.22755 1.00383 0.97972 0.85340 0.93584 0.89122 0.93149 0.87566 0.85406 0.90464 0.92046 0.91876 0.91414 0.93362 0.93513 0.93800 0.95317 0.94448 0.93130 0.89347 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.44 101.05 1.05 1.30 16 2 O -0.38 -4.34 9.23 -59.04 -0.55 -4.89 16 3 C 0.28 3.40 0.51 -26.74 -0.01 3.39 16 4 C -0.09 -1.09 5.43 37.15 0.20 -0.88 16 5 Br -0.12 -1.51 32.06 -68.01 -2.18 -3.69 16 6 C 0.05 0.64 4.49 37.16 0.17 0.81 16 7 O -0.36 -5.97 9.38 -44.85 -0.42 -6.39 16 8 C 0.07 1.36 3.50 -24.43 -0.09 1.27 16 9 H 0.07 1.19 7.90 -51.93 -0.41 0.78 16 10 C -0.13 -2.62 6.70 -24.74 -0.17 -2.78 16 11 C 0.18 4.40 5.37 -3.06 -0.02 4.38 16 12 N -0.60 -15.80 3.40 -170.08 -0.58 -16.38 16 13 C -0.23 -6.42 10.28 -15.06 -0.15 -6.57 16 14 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 15 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 16 N -0.92 -27.28 10.31 55.49 0.57 -26.70 16 17 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 C 0.12 2.59 6.96 -2.53 -0.02 2.58 16 22 O -0.38 -4.69 9.51 -63.57 -0.60 -5.30 16 23 C 0.03 0.32 10.44 101.05 1.05 1.37 16 24 H 0.05 0.36 6.42 -51.93 -0.33 0.03 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.40 7.61 -51.93 -0.40 0.00 16 27 H 0.11 1.00 6.54 -51.93 -0.34 0.66 16 28 H 0.13 1.60 7.68 -51.93 -0.40 1.20 16 29 H 0.08 1.13 6.80 -51.93 -0.35 0.78 16 30 H 0.06 0.82 6.51 -51.93 -0.34 0.48 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.05 1.29 7.38 -51.93 -0.38 0.91 16 34 H 0.05 1.27 7.51 -51.93 -0.39 0.88 16 35 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.54 6.41 -51.93 -0.33 0.21 16 39 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 40 H 0.05 0.43 7.61 -51.93 -0.40 0.03 16 LS Contribution 337.74 15.07 5.09 5.09 Total: -1.00 -31.07 337.74 -7.91 -38.98 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -6.15 Total: -2.54 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 1.93 Total: 4.52 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: -0.01 Total: -43.09 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -1.57 Total: -16.57 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 35 Polarization: -1.51 SS G_CDS: -2.18 Total: -3.69 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.07 -7.91 -38.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224328128.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.788 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds