Wall clock time and date at job start Tue Mar 31 2020 20:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00396 * 2 1 4 4 C 1.52993 * 109.46924 * 300.00142 * 3 2 1 5 5 Br 1.96600 * 109.47124 * 299.99792 * 4 3 2 6 6 C 1.52998 * 109.46808 * 179.97438 * 3 2 1 7 7 O 1.42905 * 109.46808 * 179.97438 * 6 3 2 8 8 C 1.42897 * 114.00086 * 180.02562 * 7 6 3 9 9 H 1.09004 * 110.91562 * 327.54758 * 8 7 6 10 10 C 1.55448 * 111.11758 * 203.55855 * 8 7 6 11 11 C 1.54321 * 102.96961 * 206.46102 * 10 8 7 12 12 N 1.47026 * 107.26791 * 22.19024 * 11 10 8 13 13 C 1.36941 * 125.64206 * 181.07813 * 12 11 10 14 14 H 1.08004 * 119.99539 * 179.97438 * 13 12 11 15 15 C 1.38807 * 120.00624 * 359.97438 * 13 12 11 16 16 N 1.31626 * 119.99751 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00379 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47056 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47158 * 119.99924 * 17 15 13 20 20 H 1.48494 * 109.47163 * 239.99871 * 17 15 13 21 21 C 1.47419 * 108.70576 * 1.06162 * 12 11 10 22 22 O 1.42896 * 109.46841 * 60.00136 * 3 2 1 23 23 C 1.42899 * 114.00131 * 59.99696 * 22 3 2 24 24 H 1.08998 * 109.46976 * 59.99571 * 1 2 3 25 25 H 1.08999 * 109.47585 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46865 * 300.00463 * 1 2 3 27 27 H 1.09000 * 109.47289 * 60.00004 * 4 3 2 28 28 H 1.09003 * 109.46664 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47302 * 60.00190 * 6 3 2 30 30 H 1.08998 * 109.47278 * 299.99648 * 6 3 2 31 31 H 1.08998 * 110.70855 * 88.08906 * 10 8 7 32 32 H 1.08997 * 110.70436 * 324.83654 * 10 8 7 33 33 H 1.08998 * 109.88101 * 262.77542 * 11 10 8 34 34 H 1.09000 * 109.88483 * 141.60664 * 11 10 8 35 35 H 0.96995 * 120.00037 * 179.97438 * 16 15 13 36 36 H 1.09002 * 110.36926 * 94.70918 * 21 12 11 37 37 H 1.08995 * 110.36556 * 216.92202 * 21 12 11 38 38 H 1.09003 * 109.47035 * 60.00535 * 23 22 3 39 39 H 1.09008 * 109.47180 * 179.97438 * 23 22 3 40 40 H 1.08996 * 109.47530 * 299.99910 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5589 2.0647 -1.2492 5 35 2.1389 1.0890 -2.8544 6 6 3.5355 1.1845 0.0006 7 8 4.1169 2.4899 0.0000 8 6 5.5458 2.4898 0.0000 9 1 5.9349 1.6309 0.5467 10 6 6.1060 3.8193 0.5790 11 6 7.4866 3.9383 -0.1001 12 7 7.4438 3.1217 -1.3220 13 6 8.4799 2.9439 -2.1996 14 1 8.3476 2.3213 -3.0722 15 6 9.7001 3.5637 -1.9679 16 7 9.8612 4.3229 -0.9048 17 14 11.1135 3.3205 -3.1647 18 1 10.6784 2.4293 -4.2701 19 1 11.5226 4.6350 -3.7213 20 1 12.2629 2.7043 -2.4546 21 6 6.1011 2.5259 -1.4457 22 8 1.5887 2.0146 1.1668 23 6 1.9619 1.3867 2.3950 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.4723 2.1508 -1.2492 28 1 2.0020 3.0606 -1.2489 29 1 3.8575 0.6434 -0.8891 30 1 3.8567 0.6437 0.8909 31 1 6.2132 3.7533 1.6617 32 1 5.4673 4.6587 0.3041 33 1 8.2620 3.5645 0.5685 34 1 7.6852 4.9789 -0.3565 35 1 10.7139 4.7558 -0.7427 36 1 5.4677 3.1461 -2.0800 37 1 6.1699 1.5164 -1.8508 38 1 3.0475 1.3023 2.4448 39 1 1.6057 1.9866 3.2326 40 1 1.5175 0.3927 2.4447 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224328128.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:47 Heat of formation + Delta-G solvation = -117.495067 kcal Electronic energy + Delta-G solvation = -22677.269487 eV Core-core repulsion = 19153.422925 eV Total energy + Delta-G solvation = -3523.846562 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 337.072 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.02744 -39.66315 -37.55025 -36.99043 -34.27929 -33.27751 -31.21428 -30.39052 -28.90830 -28.50662 -27.40227 -26.58020 -25.97176 -22.21985 -21.90078 -21.74997 -19.13729 -18.90965 -17.80781 -17.67800 -17.19049 -16.65887 -16.45330 -15.91922 -15.53402 -15.19551 -15.02869 -14.72368 -14.60900 -14.00073 -13.90396 -13.82602 -13.56360 -13.36877 -13.12091 -12.91104 -12.81671 -12.71020 -12.36739 -12.08605 -11.98684 -11.83095 -11.72323 -11.47515 -11.25147 -10.97053 -10.87718 -10.81368 -10.72406 -10.46145 -8.92387 -7.85983 -5.22515 0.47924 1.46528 1.47513 1.57999 1.89565 2.49207 2.60581 3.12193 3.33216 3.38843 3.48171 3.77024 3.82254 4.03429 4.14432 4.18599 4.26720 4.34645 4.40924 4.46088 4.54057 4.56094 4.61795 4.64994 4.74992 4.84464 4.88957 4.94275 5.02935 5.05893 5.43813 5.49597 5.63024 5.72587 6.08896 6.20310 6.25431 7.08800 7.74481 8.38667 9.24593 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.018456 B = 0.003668 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.721789 B = 7632.164986 C = 8800.261802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.392 6.392 3 C 0.284 3.716 4 C -0.091 4.091 5 Br -0.134 7.134 6 C 0.040 3.960 7 O -0.363 6.363 8 C 0.093 3.907 9 H 0.076 0.924 10 C -0.121 4.121 11 C 0.186 3.814 12 N -0.625 5.625 13 C -0.244 4.244 14 H 0.081 0.919 15 C -0.063 4.063 16 N -0.950 5.950 17 Si 0.979 3.021 18 H -0.267 1.267 19 H -0.291 1.291 20 H -0.289 1.289 21 C 0.119 3.881 22 O -0.391 6.391 23 C 0.027 3.973 24 H 0.051 0.949 25 H 0.109 0.891 26 H 0.056 0.944 27 H 0.128 0.872 28 H 0.117 0.883 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.020 0.980 34 H 0.012 0.988 35 H 0.248 0.752 36 H 0.024 0.976 37 H 0.040 0.960 38 H 0.042 0.958 39 H 0.106 0.894 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.080 -8.673 3.984 24.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.313 6.313 3 C 0.205 3.795 4 C -0.207 4.207 5 Br -0.053 7.053 6 C -0.037 4.037 7 O -0.281 6.281 8 C 0.034 3.966 9 H 0.094 0.906 10 C -0.159 4.159 11 C 0.061 3.939 12 N -0.353 5.353 13 C -0.373 4.373 14 H 0.099 0.901 15 C -0.256 4.256 16 N -0.599 5.599 17 Si 0.808 3.192 18 H -0.191 1.191 19 H -0.218 1.218 20 H -0.216 1.216 21 C -0.007 4.007 22 O -0.312 6.312 23 C -0.069 4.069 24 H 0.069 0.931 25 H 0.127 0.873 26 H 0.074 0.926 27 H 0.146 0.854 28 H 0.136 0.864 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.038 0.962 34 H 0.030 0.970 35 H 0.057 0.943 36 H 0.042 0.958 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.124 0.876 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.808 -8.772 3.393 24.672 hybrid contribution 1.079 0.135 -0.242 1.114 sum -21.729 -8.637 3.151 23.594 Atomic orbital electron populations 1.22980 0.78541 1.04443 1.01294 1.88014 1.22483 1.26521 1.94252 1.22111 0.90672 0.80623 0.86070 1.24986 1.06079 1.01304 0.88339 1.97413 1.92362 1.78098 1.37434 1.22745 0.91697 0.86246 1.03046 1.87821 1.19116 1.26161 1.95004 1.23159 0.79196 0.98673 0.95543 0.90590 1.22834 0.96044 0.96504 1.00489 1.20928 0.92385 0.93817 0.86749 1.44649 1.08761 1.56112 1.25761 1.19484 0.90256 1.24913 1.02656 0.90107 1.25649 1.00293 0.99723 0.99960 1.70175 1.24301 1.36322 1.29089 0.84996 0.78906 0.77151 0.78190 1.19127 1.21836 1.21627 1.22009 0.86286 0.96310 0.96123 1.87989 1.78921 1.49890 1.14430 1.22915 1.00056 0.98908 0.85013 0.93055 0.87314 0.92564 0.85400 0.86414 0.91138 0.91077 0.89229 0.90802 0.96202 0.97018 0.94261 0.95785 0.94152 0.93907 0.87568 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.44 113.37 1.18 1.50 16 2 O -0.39 -8.01 9.23 -126.21 -1.17 -9.18 16 3 C 0.28 6.36 0.51 30.59 0.02 6.38 16 4 C -0.09 -1.93 5.43 71.98 0.39 -1.54 16 5 Br -0.13 -3.18 32.06 -20.37 -0.65 -3.83 16 6 C 0.04 1.05 4.49 71.98 0.32 1.37 16 7 O -0.36 -11.23 9.38 -139.78 -1.31 -12.55 16 8 C 0.09 3.30 3.50 32.09 0.11 3.42 16 9 H 0.08 2.59 7.90 -2.38 -0.02 2.57 16 10 C -0.12 -4.56 6.70 31.88 0.21 -4.35 16 11 C 0.19 9.37 5.37 86.73 0.47 9.83 16 12 N -0.63 -33.13 3.40 -692.01 -2.35 -35.48 16 13 C -0.24 -14.02 10.28 84.03 0.86 -13.16 16 14 H 0.08 4.47 7.83 -2.91 -0.02 4.44 16 15 C -0.06 -3.64 5.49 84.86 0.47 -3.18 16 16 N -0.95 -57.53 10.31 21.65 0.22 -57.30 16 17 Si 0.98 46.27 29.55 68.60 2.03 48.30 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 19 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 20 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 21 C 0.12 5.09 6.96 86.85 0.60 5.70 16 22 O -0.39 -8.70 9.51 -121.88 -1.16 -9.86 16 23 C 0.03 0.47 10.44 113.37 1.18 1.65 16 24 H 0.05 0.67 6.42 -2.39 -0.02 0.65 16 25 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 0.73 7.61 -2.39 -0.02 0.72 16 27 H 0.13 2.12 6.54 -2.39 -0.02 2.10 16 28 H 0.12 2.77 7.68 -2.39 -0.02 2.75 16 29 H 0.07 1.97 6.80 -2.39 -0.02 1.95 16 30 H 0.07 1.74 6.51 -2.39 -0.02 1.72 16 31 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 32 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.02 1.09 7.38 -2.39 -0.02 1.08 16 34 H 0.01 0.65 7.51 -2.39 -0.02 0.64 16 35 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 36 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.04 0.82 6.41 -2.39 -0.02 0.80 16 39 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.06 0.89 7.61 -2.39 -0.02 0.87 16 Total: -1.00 -66.85 337.74 2.46 -64.40 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 1.02 Total: 7.88 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 5.82 Total: 7.63 kcal Atomic # 7 Polarization: -90.66 SS G_CDS: -2.13 Total: -92.79 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -3.64 Total: -31.58 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Atomic # 35 Polarization: -3.18 SS G_CDS: -0.65 Total: -3.83 kcal Total: -66.85 2.46 -64.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224328128.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.100 kcal (2) G-P(sol) polarization free energy of solvation -66.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds