Wall clock time and date at job start Tue Mar 31 2020 19:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00026 * 2 1 4 4 H 1.48502 * 109.47114 * 269.99909 * 3 2 1 5 5 H 1.48500 * 109.47275 * 30.00157 * 3 2 1 6 6 H 1.48503 * 109.47329 * 150.00107 * 3 2 1 7 7 C 1.37880 * 119.99546 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99424 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00357 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46984 * 300.00068 * 9 7 2 11 11 C 1.52993 * 109.47030 * 60.00212 * 9 7 2 12 12 Cl 1.80301 * 109.47099 * 185.00014 * 11 9 7 13 13 O 1.42902 * 109.46881 * 180.02562 * 9 7 2 14 14 C 1.35220 * 116.99928 * 149.99964 * 13 9 7 15 15 N 1.32332 * 120.84594 * 0.02562 * 14 13 9 16 16 C 1.32854 * 121.43400 * 179.97438 * 15 14 13 17 17 O 1.35367 * 118.58714 * 179.97438 * 16 15 14 18 18 N 1.31828 * 122.82621 * 0.02562 * 16 15 14 19 19 C 1.33927 * 120.45175 * 359.97438 * 18 16 15 20 20 C 1.40414 * 121.69818 * 179.97438 * 19 18 16 21 21 C 1.35864 * 119.94696 * 180.30352 * 20 19 18 22 22 C 1.40594 * 120.88034 * 359.44238 * 21 20 19 23 23 C 1.47624 * 119.78746 * 180.28226 * 22 21 20 24 24 N 1.34778 * 120.00332 * 0.27336 * 23 22 21 25 25 O 1.21585 * 119.99808 * 180.26549 * 23 22 21 26 26 C 1.38864 * 120.41981 * 0.55897 * 22 21 20 27 27 C 1.39617 * 119.30808 * 359.72664 * 26 22 21 28 28 H 0.97003 * 119.99958 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47057 * 304.99508 * 11 9 7 30 30 H 1.08994 * 109.47469 * 64.99811 * 11 9 7 31 31 H 0.96700 * 114.00235 * 270.02097 * 17 16 15 32 32 H 1.08002 * 120.02339 * 0.02562 * 20 19 18 33 33 H 1.08000 * 119.56243 * 179.72012 * 21 20 19 34 34 H 0.97002 * 119.99831 * 359.97438 * 24 23 22 35 35 H 0.97003 * 120.00133 * 179.97438 * 24 23 22 36 36 H 1.08000 * 120.34391 * 179.75772 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 6 0.3709 -2.5799 -1.2494 12 17 -0.6396 -4.0714 -1.1772 13 8 2.1796 -3.5853 -0.0005 14 6 1.7854 -4.7300 0.6019 15 7 0.5901 -4.8253 1.1616 16 6 0.1908 -5.9443 1.7561 17 8 -1.0437 -5.9782 2.3106 18 7 0.9453 -7.0228 1.8302 19 6 2.1729 -7.0303 1.2949 20 6 2.9988 -8.1641 1.3590 21 6 4.2407 -8.1304 0.8092 22 6 4.7123 -6.9748 0.1620 23 6 6.0635 -6.9669 -0.4325 24 7 6.8387 -8.0670 -0.3588 25 8 6.4771 -5.9680 -0.9889 26 6 3.9174 -5.8390 0.0835 27 6 2.6411 -5.8575 0.6493 28 1 -0.4850 0.8401 0.0004 29 1 -0.2766 -1.7043 -1.2949 30 1 1.0022 -2.6115 -2.1374 31 1 -1.0667 -5.7011 3.2367 32 1 2.6487 -9.0606 1.8490 33 1 4.8725 -9.0045 0.8660 34 1 6.5089 -8.8638 0.0853 35 1 7.7265 -8.0619 -0.7498 36 1 4.2823 -4.9506 -0.4105 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234517628.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:39 Heat of formation + Delta-G solvation = -52.155442 kcal Electronic energy + Delta-G solvation = -26499.493212 eV Core-core repulsion = 22396.676250 eV Total energy + Delta-G solvation = -4102.816961 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.34631 -39.72025 -38.50528 -37.91425 -35.88689 -34.85624 -33.91221 -33.77735 -32.90902 -31.28181 -29.98298 -29.28145 -25.43061 -24.80225 -24.54820 -22.38493 -21.96960 -20.92120 -19.37548 -18.72957 -17.98287 -17.40040 -17.21650 -16.74531 -15.93868 -15.74267 -15.15567 -14.88692 -14.79816 -14.62699 -14.24186 -14.06881 -13.60642 -13.46167 -13.28164 -13.09840 -12.15699 -12.09820 -11.87718 -11.68359 -11.59307 -11.30008 -11.15485 -10.97712 -10.85950 -10.47199 -10.28200 -10.16265 -9.87704 -9.68699 -9.42041 -9.28295 -9.01822 -8.90341 -8.66791 -7.94946 -6.48046 -4.58142 0.26079 0.63748 1.85417 2.45182 3.10681 3.11604 3.19175 3.22569 3.31936 3.35046 3.42870 3.51050 4.11073 4.14950 4.32143 4.54625 4.66003 4.77362 4.87359 4.93496 5.21795 5.32371 5.61004 5.83401 5.88553 6.05785 6.14818 6.19610 6.25184 6.50689 6.62220 6.75054 7.04643 7.10608 7.15457 7.39783 7.62717 7.66535 7.90588 8.12419 8.31127 8.53740 9.09405 10.58548 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.010485 B = 0.004528 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.955173 B = 6182.710674 C = 8031.025434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.068 3.932 3 Si 0.918 3.082 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.530 4.530 8 H 0.078 0.922 9 C 0.209 3.791 10 H 0.074 0.926 11 C -0.036 4.036 12 Cl -0.229 7.229 13 O -0.279 6.279 14 C 0.456 3.544 15 N -0.570 5.570 16 C 0.558 3.442 17 O -0.458 6.458 18 N -0.566 5.566 19 C 0.230 3.770 20 C -0.124 4.124 21 C -0.046 4.046 22 C -0.185 4.185 23 C 0.568 3.432 24 N -0.855 5.855 25 O -0.537 6.537 26 C 0.040 3.960 27 C -0.201 4.201 28 H 0.273 0.727 29 H 0.136 0.864 30 H 0.072 0.928 31 H 0.411 0.589 32 H 0.144 0.856 33 H 0.132 0.868 34 H 0.399 0.601 35 H 0.404 0.596 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.010 -15.084 3.297 16.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.137 4.137 3 Si 0.744 3.256 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.568 4.568 8 H 0.096 0.904 9 C 0.155 3.845 10 H 0.091 0.909 11 C -0.099 4.099 12 Cl -0.203 7.203 13 O -0.178 6.178 14 C 0.258 3.742 15 N -0.313 5.313 16 C 0.253 3.747 17 O -0.261 6.261 18 N -0.300 5.300 19 C 0.101 3.899 20 C -0.143 4.143 21 C -0.067 4.067 22 C -0.189 4.189 23 C 0.355 3.645 24 N -0.419 5.419 25 O -0.414 6.414 26 C 0.019 3.981 27 C -0.207 4.207 28 H 0.083 0.917 29 H 0.154 0.846 30 H 0.090 0.910 31 H 0.270 0.730 32 H 0.162 0.838 33 H 0.150 0.850 34 H 0.229 0.771 35 H 0.235 0.765 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.945 -14.442 2.744 15.858 hybrid contribution 0.946 0.665 0.130 1.164 sum 6.892 -13.777 2.874 15.671 Atomic orbital electron populations 1.69819 1.05985 1.28215 1.47882 1.24954 0.95191 0.99766 0.93758 0.86148 0.79642 0.81150 0.78644 1.20034 1.20687 1.19327 1.20981 0.94370 0.87592 1.53858 0.90387 1.20809 0.87016 0.80819 0.95833 0.90872 1.25604 0.95563 0.87705 1.00989 1.98657 1.75482 1.47155 1.99005 1.86285 1.45613 1.19313 1.66600 1.20195 0.85614 0.86474 0.81904 1.67788 1.16552 1.28783 1.18219 1.19912 0.84201 0.83305 0.87289 1.84647 1.21324 1.88632 1.31542 1.68340 1.05318 1.29430 1.26867 1.18593 0.89634 0.91786 0.89857 1.20425 0.93321 0.97419 1.03163 1.20896 0.95279 0.96514 0.94025 1.19675 0.95709 0.96014 1.07512 1.18130 0.84875 0.82874 0.78626 1.43724 1.20120 1.15885 1.62169 1.90863 1.74133 1.32744 1.43646 1.21418 0.89719 0.97585 0.89400 1.18690 0.97605 0.94969 1.09486 0.91667 0.84585 0.90967 0.72988 0.83808 0.85028 0.77123 0.76547 0.82758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.81 11.29 55.43 0.63 -22.19 16 2 C 0.07 1.69 5.29 -17.82 -0.09 1.60 16 3 Si 0.92 19.67 29.54 -169.99 -5.02 14.65 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.53 -13.53 8.89 -34.44 -0.31 -13.83 16 8 H 0.08 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.21 5.04 2.26 -27.89 -0.06 4.98 16 10 H 0.07 1.92 7.03 -51.93 -0.37 1.55 16 11 C -0.04 -0.82 6.17 37.15 0.23 -0.60 16 12 Cl -0.23 -5.00 25.94 -51.86 -1.35 -6.35 16 13 O -0.28 -6.20 9.09 -17.36 -0.16 -6.35 16 14 C 0.46 9.20 6.70 -16.04 -0.11 9.09 16 15 N -0.57 -11.55 6.57 -14.37 -0.09 -11.64 16 16 C 0.56 10.08 8.65 -91.21 -0.79 9.29 16 17 O -0.46 -7.18 13.63 -17.79 -0.24 -7.42 16 18 N -0.57 -9.59 10.46 -12.72 -0.13 -9.72 16 19 C 0.23 3.62 6.62 -84.76 -0.56 3.06 16 20 C -0.12 -1.44 9.97 -39.61 -0.40 -1.83 16 21 C -0.05 -0.44 9.44 -39.54 -0.37 -0.81 16 22 C -0.19 -2.35 5.87 -104.95 -0.62 -2.97 16 23 C 0.57 7.11 8.03 -12.43 -0.10 7.01 16 24 N -0.85 -6.22 8.82 30.48 0.27 -5.95 16 25 O -0.54 -9.12 17.14 5.29 0.09 -9.03 16 26 C 0.04 0.63 9.17 -38.84 -0.36 0.27 16 27 C -0.20 -3.49 5.75 -106.72 -0.61 -4.11 16 28 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 29 H 0.14 3.36 5.95 -51.93 -0.31 3.06 16 30 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 31 H 0.41 4.12 9.06 45.56 0.41 4.53 16 32 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.13 0.66 6.34 -52.49 -0.33 0.33 16 34 H 0.40 1.61 6.81 -40.82 -0.28 1.33 16 35 H 0.40 2.41 8.93 -40.82 -0.36 2.04 16 36 H 0.15 2.64 7.27 -52.49 -0.38 2.26 16 LS Contribution 330.34 15.07 4.98 4.98 Total: -1.00 -31.93 330.34 -7.18 -39.11 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -2.01 Total: 8.76 kcal Atomic # 6 Polarization: 15.30 SS G_CDS: -4.15 Total: 11.16 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.67 Total: -49.50 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.31 Total: -22.81 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 17 Polarization: -5.00 SS G_CDS: -1.35 Total: -6.35 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.93 -7.18 -39.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234517628.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.044 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds