Wall clock time and date at job start Tue Mar 31 2020 19:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00026 * 2 1 4 4 H 1.48502 * 109.47114 * 269.99909 * 3 2 1 5 5 H 1.48500 * 109.47275 * 30.00157 * 3 2 1 6 6 H 1.48503 * 109.47329 * 150.00107 * 3 2 1 7 7 C 1.37880 * 119.99546 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99424 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00357 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46984 * 300.00068 * 9 7 2 11 11 C 1.52993 * 109.47030 * 60.00212 * 9 7 2 12 12 Cl 1.80301 * 109.47099 * 185.00014 * 11 9 7 13 13 O 1.42902 * 109.46881 * 180.02562 * 9 7 2 14 14 C 1.35220 * 116.99928 * 149.99964 * 13 9 7 15 15 N 1.32332 * 120.84594 * 0.02562 * 14 13 9 16 16 C 1.32854 * 121.43400 * 179.97438 * 15 14 13 17 17 O 1.35367 * 118.58714 * 179.97438 * 16 15 14 18 18 N 1.31828 * 122.82621 * 0.02562 * 16 15 14 19 19 C 1.33927 * 120.45175 * 359.97438 * 18 16 15 20 20 C 1.40414 * 121.69818 * 179.97438 * 19 18 16 21 21 C 1.35864 * 119.94696 * 180.30352 * 20 19 18 22 22 C 1.40594 * 120.88034 * 359.44238 * 21 20 19 23 23 C 1.47624 * 119.78746 * 180.28226 * 22 21 20 24 24 N 1.34778 * 120.00332 * 0.27336 * 23 22 21 25 25 O 1.21585 * 119.99808 * 180.26549 * 23 22 21 26 26 C 1.38864 * 120.41981 * 0.55897 * 22 21 20 27 27 C 1.39617 * 119.30808 * 359.72664 * 26 22 21 28 28 H 0.97003 * 119.99958 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47057 * 304.99508 * 11 9 7 30 30 H 1.08994 * 109.47469 * 64.99811 * 11 9 7 31 31 H 0.96700 * 114.00235 * 270.02097 * 17 16 15 32 32 H 1.08002 * 120.02339 * 0.02562 * 20 19 18 33 33 H 1.08000 * 119.56243 * 179.72012 * 21 20 19 34 34 H 0.97002 * 119.99831 * 359.97438 * 24 23 22 35 35 H 0.97003 * 120.00133 * 179.97438 * 24 23 22 36 36 H 1.08000 * 120.34391 * 179.75772 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 6 0.3709 -2.5799 -1.2494 12 17 -0.6396 -4.0714 -1.1772 13 8 2.1796 -3.5853 -0.0005 14 6 1.7854 -4.7300 0.6019 15 7 0.5901 -4.8253 1.1616 16 6 0.1908 -5.9443 1.7561 17 8 -1.0437 -5.9782 2.3106 18 7 0.9453 -7.0228 1.8302 19 6 2.1729 -7.0303 1.2949 20 6 2.9988 -8.1641 1.3590 21 6 4.2407 -8.1304 0.8092 22 6 4.7123 -6.9748 0.1620 23 6 6.0635 -6.9669 -0.4325 24 7 6.8387 -8.0670 -0.3588 25 8 6.4771 -5.9680 -0.9889 26 6 3.9174 -5.8390 0.0835 27 6 2.6411 -5.8575 0.6493 28 1 -0.4850 0.8401 0.0004 29 1 -0.2766 -1.7043 -1.2949 30 1 1.0022 -2.6115 -2.1374 31 1 -1.0667 -5.7011 3.2367 32 1 2.6487 -9.0606 1.8490 33 1 4.8725 -9.0045 0.8660 34 1 6.5089 -8.8638 0.0853 35 1 7.7265 -8.0619 -0.7498 36 1 4.2823 -4.9506 -0.4105 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234517628.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:38 Heat of formation + Delta-G solvation = -80.691979 kcal Electronic energy + Delta-G solvation = -26500.730649 eV Core-core repulsion = 22396.676250 eV Total energy + Delta-G solvation = -4104.054398 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.63582 -40.81254 -40.05020 -39.08156 -37.14503 -36.63362 -35.56289 -34.83481 -34.36853 -32.47996 -31.42526 -30.77867 -27.35861 -26.09120 -25.78013 -23.70198 -23.37530 -22.21441 -20.63069 -19.93335 -19.18659 -18.81098 -18.62004 -18.04680 -17.24308 -17.08141 -16.84653 -16.29922 -15.97141 -15.85442 -15.45681 -15.28083 -15.02094 -14.88407 -14.75348 -14.28278 -13.93411 -13.82378 -13.11111 -13.06442 -13.00790 -12.84296 -12.74049 -12.66375 -12.35806 -12.09938 -11.86596 -11.49620 -11.25563 -11.22497 -10.73288 -10.71945 -10.64820 -10.38096 -10.22054 -9.21041 -8.40690 -6.58812 -0.97956 -0.50860 0.59727 1.36697 1.38914 1.41664 1.52561 1.57873 1.78608 2.06857 2.26321 2.37412 2.46795 2.89644 2.93741 3.06798 3.45210 3.47883 3.82690 3.92282 4.06808 4.12271 4.29147 4.33667 4.54834 4.78593 4.82484 4.92577 5.04321 5.12420 5.18774 5.43851 5.49586 5.69130 5.85151 5.90743 6.13998 6.44018 6.52870 6.59416 6.96105 7.13032 7.31376 8.66005 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.010485 B = 0.004528 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.955173 B = 6182.710674 C = 8031.025434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.030 3.970 3 Si 0.980 3.020 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.219 3.781 10 H 0.045 0.955 11 C -0.026 4.026 12 Cl -0.217 7.217 13 O -0.295 6.295 14 C 0.429 3.571 15 N -0.594 5.594 16 C 0.541 3.459 17 O -0.464 6.464 18 N -0.556 5.556 19 C 0.208 3.792 20 C -0.111 4.111 21 C -0.020 4.020 22 C -0.165 4.165 23 C 0.566 3.434 24 N -0.821 5.821 25 O -0.589 6.589 26 C 0.007 3.993 27 C -0.207 4.207 28 H 0.277 0.723 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.430 0.570 32 H 0.180 0.820 33 H 0.195 0.805 34 H 0.420 0.580 35 H 0.415 0.585 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.819 -18.151 3.911 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.172 4.172 3 Si 0.803 3.197 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.591 4.591 8 H 0.088 0.912 9 C 0.165 3.835 10 H 0.063 0.937 11 C -0.089 4.089 12 Cl -0.191 7.191 13 O -0.195 6.195 14 C 0.232 3.768 15 N -0.338 5.338 16 C 0.236 3.764 17 O -0.270 6.270 18 N -0.289 5.289 19 C 0.081 3.919 20 C -0.130 4.130 21 C -0.040 4.040 22 C -0.169 4.169 23 C 0.352 3.648 24 N -0.387 5.387 25 O -0.470 6.470 26 C -0.015 4.015 27 C -0.213 4.213 28 H 0.087 0.913 29 H 0.138 0.862 30 H 0.093 0.907 31 H 0.293 0.707 32 H 0.198 0.802 33 H 0.212 0.788 34 H 0.254 0.746 35 H 0.248 0.752 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.758 -17.609 3.402 19.540 hybrid contribution 0.486 1.361 -0.014 1.445 sum 8.245 -16.248 3.388 18.532 Atomic orbital electron populations 1.69911 1.07140 1.29124 1.48018 1.25722 0.95924 1.02588 0.92940 0.85212 0.78345 0.77257 0.78894 1.19253 1.19948 1.19307 1.21201 0.94207 0.88906 1.54810 0.91215 1.20401 0.86920 0.81374 0.94828 0.93734 1.25324 0.95260 0.87555 1.00762 1.98648 1.75111 1.46356 1.99020 1.86228 1.45339 1.19900 1.68074 1.20485 0.86673 0.86557 0.83075 1.67668 1.17076 1.30225 1.18876 1.20033 0.84969 0.83264 0.88090 1.84605 1.20475 1.88656 1.33299 1.68414 1.05638 1.28488 1.26313 1.19183 0.89909 0.92660 0.90188 1.20884 0.93015 0.96782 1.02334 1.21451 0.94998 0.96796 0.90804 1.19923 0.95303 0.95805 1.05864 1.18152 0.85022 0.83371 0.78262 1.43452 1.19834 1.14871 1.60504 1.90858 1.75050 1.35079 1.46047 1.21243 0.90213 0.98517 0.91482 1.18777 0.97744 0.94592 1.10157 0.91343 0.86232 0.90668 0.70668 0.80243 0.78823 0.74631 0.75208 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.22 11.29 21.45 0.24 -47.97 16 2 C 0.03 1.56 5.29 84.66 0.45 2.00 16 3 Si 0.98 40.97 29.54 68.60 2.03 43.00 16 4 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.55 -29.66 8.89 25.60 0.23 -29.43 16 8 H 0.07 3.75 7.81 -2.91 -0.02 3.72 16 9 C 0.22 11.25 2.26 29.84 0.07 11.32 16 10 H 0.04 2.51 7.03 -2.39 -0.02 2.49 16 11 C -0.03 -1.26 6.17 71.98 0.44 -0.81 16 12 Cl -0.22 -9.84 25.94 -2.72 -0.07 -9.91 16 13 O -0.29 -14.07 9.09 -85.02 -0.77 -14.84 16 14 C 0.43 18.33 6.70 85.45 0.57 18.90 16 15 N -0.59 -25.25 6.57 -425.19 -2.80 -28.04 16 16 C 0.54 19.90 8.65 180.55 1.56 21.46 16 17 O -0.46 -14.67 13.63 -86.58 -1.18 -15.85 16 18 N -0.56 -18.33 10.46 -307.40 -3.22 -21.55 16 19 C 0.21 6.26 6.62 40.24 0.27 6.52 16 20 C -0.11 -2.08 9.97 22.25 0.22 -1.86 16 21 C -0.02 -0.27 9.44 22.29 0.21 -0.06 16 22 C -0.17 -3.80 5.87 -20.08 -0.12 -3.92 16 23 C 0.57 12.82 8.03 86.72 0.70 13.51 16 24 N -0.82 -8.25 8.82 -175.75 -1.55 -9.80 16 25 O -0.59 -19.93 17.14 -3.98 -0.07 -19.99 16 26 C 0.01 0.23 9.17 22.75 0.21 0.44 16 27 C -0.21 -7.35 5.75 -21.22 -0.12 -7.47 16 28 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 29 H 0.12 6.21 5.95 -2.39 -0.01 6.19 16 30 H 0.07 3.52 8.14 -2.39 -0.02 3.50 16 31 H 0.43 8.72 9.06 -74.06 -0.67 8.05 16 32 H 0.18 2.19 8.06 -2.91 -0.02 2.16 16 33 H 0.19 0.32 6.34 -2.91 -0.02 0.31 16 34 H 0.42 0.67 6.81 -92.71 -0.63 0.04 16 35 H 0.42 3.25 8.93 -92.71 -0.83 2.42 16 36 H 0.13 4.77 7.27 -2.91 -0.02 4.75 16 Total: -1.00 -74.99 330.34 -3.62 -78.61 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -0.92 Total: 15.77 kcal Atomic # 6 Polarization: 25.91 SS G_CDS: 4.69 Total: 30.59 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -7.32 Total: -107.36 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: -2.02 Total: -50.69 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Atomic # 17 Polarization: -9.84 SS G_CDS: -0.07 Total: -9.91 kcal Total: -74.99 -3.62 -78.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234517628.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.084 kcal (2) G-P(sol) polarization free energy of solvation -74.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds