Wall clock time and date at job start Tue Mar 31 2020 20:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42106 * 110.54451 * 2 1 4 4 O 1.42104 * 110.54057 * 223.25381 * 2 1 3 5 5 C 1.76197 * 104.45185 * 111.62691 * 2 1 3 6 6 C 1.38330 * 120.35703 * 89.99621 * 5 2 1 7 7 N 1.31892 * 121.04093 * 179.97438 * 6 5 2 8 8 C 1.31735 * 121.86278 * 0.02562 * 7 6 5 9 9 C 1.39375 * 120.58366 * 359.97438 * 8 7 6 10 10 C 1.48274 * 120.53914 * 179.97438 * 9 8 7 11 11 C 1.39297 * 120.13341 * 129.98002 * 10 9 8 12 12 C 1.37972 * 119.97203 * 179.97438 * 11 10 9 13 13 C 1.38685 * 120.24032 * 0.06789 * 12 11 10 14 14 F 1.35099 * 119.86187 * 180.02562 * 13 12 11 15 15 C 1.38332 * 120.27339 * 359.97076 * 13 12 11 16 16 C 1.38704 * 120.02679 * 359.97438 * 15 13 12 17 17 O 1.35664 * 120.12117 * 179.74253 * 16 15 13 18 18 C 1.34813 * 117.00039 * 354.39075 * 17 16 15 19 19 H 1.07997 * 120.00044 * 5.04360 * 18 17 16 20 20 C 1.38656 * 119.99808 * 185.04993 * 18 17 16 21 21 N 1.31555 * 119.99583 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00133 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46609 * 90.00311 * 22 20 18 24 24 H 1.48491 * 109.47065 * 210.00238 * 22 20 18 25 25 H 1.48493 * 109.47098 * 330.00886 * 22 20 18 26 26 C 1.38396 * 120.35627 * 270.25586 * 5 2 1 27 27 H 1.08999 * 109.46760 * 308.37339 * 1 2 3 28 28 H 1.09003 * 109.46993 * 68.37296 * 1 2 3 29 29 H 1.08994 * 109.47049 * 188.37518 * 1 2 3 30 30 H 1.08002 * 119.47247 * 359.97438 * 6 5 2 31 31 H 1.08001 * 119.70900 * 180.02562 * 8 7 6 32 32 H 1.08002 * 120.01834 * 359.97316 * 11 10 9 33 33 H 1.07999 * 119.88136 * 180.02562 * 12 11 10 34 34 H 1.07996 * 119.98530 * 180.02562 * 15 13 12 35 35 H 0.96997 * 119.99795 * 179.97438 * 21 20 18 36 36 H 1.08005 * 120.84797 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2538 -0.6288 1.5861 6 6 2.4282 -1.9880 1.7755 7 7 2.7578 -2.4732 2.9568 8 6 2.9348 -1.6939 4.0040 9 6 2.7776 -0.3133 3.8952 10 6 2.9765 0.5629 5.0747 11 6 3.8018 1.6814 4.9837 12 6 3.9841 2.4948 6.0831 13 6 3.3493 2.2025 7.2811 14 9 3.5328 3.0045 8.3527 15 6 2.5282 1.0939 7.3829 16 6 2.3362 0.2692 6.2843 17 8 1.5355 -0.8214 6.3835 18 6 1.0486 -1.1141 7.6061 19 1 1.2335 -0.4469 8.4349 20 6 0.3106 -2.2719 7.7994 21 7 -0.1640 -2.5578 8.9926 22 14 -0.0096 -3.4258 6.3657 23 1 1.0809 -4.4306 6.2860 24 1 -1.3073 -4.1186 6.5683 25 1 -0.0568 -2.6454 5.1033 26 6 2.4232 0.2312 2.6571 27 1 -0.3633 0.6380 0.8057 28 1 -0.3633 0.3788 -0.9553 29 1 -0.3633 -1.0166 0.1497 30 1 2.2922 -2.6623 0.9429 31 1 3.2048 -2.1285 4.9551 32 1 4.2988 1.9119 4.0529 33 1 4.6239 3.3618 6.0108 34 1 2.0359 0.8709 8.3179 35 1 -0.6806 -3.3675 9.1278 36 1 2.2896 1.2964 2.5385 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239700958.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:30 Heat of formation + Delta-G solvation = -74.836954 kcal Electronic energy + Delta-G solvation = -26278.641149 eV Core-core repulsion = 22156.964388 eV Total energy + Delta-G solvation = -4121.676761 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.51721 -40.36353 -39.16689 -37.29560 -36.78162 -36.13764 -33.11080 -32.69501 -32.16161 -29.83761 -29.75900 -28.63198 -25.66923 -24.01662 -23.97922 -21.87909 -21.49948 -19.19558 -18.38495 -18.16701 -17.60106 -16.79442 -16.66970 -16.37979 -15.81056 -15.58977 -15.48354 -15.29436 -15.16127 -14.25735 -14.09385 -13.90434 -13.61425 -13.53755 -13.47353 -13.39446 -13.20554 -12.74018 -12.54954 -12.49780 -12.28394 -12.15957 -11.96209 -11.51999 -11.34132 -11.06310 -11.01412 -10.92865 -10.51380 -10.16577 -9.80587 -9.56648 -9.35824 -9.13891 -8.28781 -7.67083 -6.69236 -4.37521 -0.16194 0.63966 1.01099 1.71845 1.82456 2.64360 3.04373 3.11178 3.21516 3.45614 3.78831 3.88477 3.99536 4.03020 4.34733 4.40289 4.50800 4.55418 4.71428 4.79050 4.81360 4.91312 4.97184 5.21804 5.38064 5.40650 5.43410 5.50641 5.72174 5.81034 6.04674 6.13659 6.35474 6.51458 6.60698 6.70382 6.76526 7.23684 7.46490 7.70893 7.86753 8.63069 9.16909 10.36793 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.010186 B = 0.004790 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.240164 B = 5843.961820 C = 7931.459001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.509 3.491 3 O -0.937 6.937 4 O -0.938 6.938 5 C -0.720 4.720 6 C 0.181 3.819 7 N -0.492 5.492 8 C 0.174 3.826 9 C -0.074 4.074 10 C -0.151 4.151 11 C -0.028 4.028 12 C -0.239 4.239 13 C 0.152 3.848 14 F -0.146 7.146 15 C -0.256 4.256 16 C 0.196 3.804 17 O -0.196 6.196 18 C -0.396 4.396 19 H 0.111 0.889 20 C 0.072 3.928 21 N -0.863 5.863 22 Si 0.898 3.102 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.259 1.259 26 C 0.020 3.980 27 H 0.134 0.866 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.170 0.830 31 H 0.167 0.833 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.150 0.850 35 H 0.284 0.716 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.807 5.048 -14.014 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.687 3.313 3 O -0.934 6.934 4 O -0.935 6.935 5 C -0.808 4.808 6 C 0.022 3.978 7 N -0.200 5.200 8 C 0.018 3.982 9 C -0.077 4.077 10 C -0.153 4.153 11 C -0.047 4.047 12 C -0.258 4.258 13 C 0.133 3.867 14 F -0.124 7.124 15 C -0.276 4.276 16 C 0.141 3.859 17 O -0.099 6.099 18 C -0.471 4.471 19 H 0.129 0.871 20 C -0.134 4.134 21 N -0.498 5.498 22 Si 0.722 3.278 23 H -0.191 1.191 24 H -0.204 1.204 25 H -0.183 1.183 26 C -0.006 4.006 27 H 0.152 0.848 28 H 0.150 0.850 29 H 0.152 0.848 30 H 0.187 0.813 31 H 0.184 0.816 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.167 0.833 35 H 0.095 0.905 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.247 4.061 -14.495 15.219 hybrid contribution -0.882 0.241 0.723 1.166 sum 1.364 4.302 -13.771 14.492 Atomic orbital electron populations 1.30223 1.25540 1.12372 1.11886 1.04951 0.77825 0.74578 0.73899 1.93584 1.77394 1.36442 1.85995 1.93580 1.77449 1.61689 1.60808 1.31341 1.21969 1.04695 1.22788 1.22573 0.88984 0.91026 0.95251 1.67816 1.13059 1.39628 0.99533 1.23409 0.88058 0.89721 0.97002 1.19628 1.00274 0.94532 0.93260 1.17585 1.06596 0.99757 0.91370 1.20573 0.94920 0.91489 0.97689 1.20554 1.08269 1.04417 0.92600 1.17564 0.96749 0.89142 0.83293 1.91451 1.93871 1.72313 1.54777 1.21111 1.06879 0.97651 1.01958 1.18621 0.88484 0.87294 0.91522 1.83560 1.54234 1.38294 1.33775 1.20816 1.33422 1.08936 0.83931 0.87147 1.24471 0.94993 0.96537 0.97395 1.69626 1.32946 1.26178 1.21073 0.86298 0.78532 0.80766 0.82173 1.19071 1.20439 1.18276 1.21409 0.89071 0.99869 0.90272 0.84764 0.84978 0.84842 0.81344 0.81605 0.85299 0.85567 0.83289 0.90536 0.83005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.95 10.80 101.05 1.09 -2.85 16 2 S 2.51 24.56 5.81 -107.50 -0.62 23.94 16 3 O -0.94 -11.73 17.20 -57.54 -0.99 -12.72 16 4 O -0.94 -11.49 17.14 -57.54 -0.99 -12.48 16 5 C -0.72 -9.09 5.67 -39.49 -0.22 -9.31 16 6 C 0.18 2.52 10.63 -17.49 -0.19 2.33 16 7 N -0.49 -8.30 10.35 -12.95 -0.13 -8.43 16 8 C 0.17 3.05 9.97 -17.17 -0.17 2.88 16 9 C -0.07 -1.22 5.28 -104.76 -0.55 -1.78 16 10 C -0.15 -2.61 5.51 -104.72 -0.58 -3.19 16 11 C -0.03 -0.42 9.53 -39.29 -0.37 -0.80 16 12 C -0.24 -3.64 10.01 -39.51 -0.40 -4.03 16 13 C 0.15 2.67 7.29 -39.38 -0.29 2.39 16 14 F -0.15 -2.53 17.26 2.25 0.04 -2.50 16 15 C -0.26 -5.06 9.13 -39.37 -0.36 -5.42 16 16 C 0.20 3.97 6.57 -38.75 -0.25 3.71 16 17 O -0.20 -4.51 6.95 0.36 0.00 -4.50 16 18 C -0.40 -10.08 9.95 30.89 0.31 -9.78 16 19 H 0.11 2.90 5.44 -52.49 -0.29 2.61 16 20 C 0.07 1.86 5.49 -17.52 -0.10 1.77 16 21 N -0.86 -23.22 13.96 55.48 0.77 -22.45 16 22 Si 0.90 20.18 28.62 -169.99 -4.86 15.31 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 26 C 0.02 0.28 9.11 -38.93 -0.35 -0.08 16 27 H 0.13 0.73 8.14 -51.92 -0.42 0.30 16 28 H 0.13 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.17 1.84 7.57 -52.49 -0.40 1.44 16 31 H 0.17 2.98 7.69 -52.49 -0.40 2.57 16 32 H 0.13 1.56 8.05 -52.49 -0.42 1.14 16 33 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.15 3.13 5.64 -52.49 -0.30 2.84 16 35 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.15 1.77 7.66 -52.48 -0.40 1.37 16 LS Contribution 336.39 15.07 5.07 5.07 Total: -1.00 -31.83 336.39 -7.18 -39.02 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -3.03 Total: 3.90 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -2.44 Total: -24.15 kcal Atomic # 7 Polarization: -31.52 SS G_CDS: 0.64 Total: -30.88 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -1.97 Total: -29.71 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.86 Total: 15.31 kcal Atomic # 16 Polarization: 24.56 SS G_CDS: -0.62 Total: 23.94 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.83 -7.18 -39.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239700958.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.820 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds