Wall clock time and date at job start Tue Mar 31 2020 20:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42106 * 110.54451 * 2 1 4 4 O 1.42104 * 110.54057 * 223.25381 * 2 1 3 5 5 C 1.76197 * 104.45185 * 111.62691 * 2 1 3 6 6 C 1.38330 * 120.35703 * 89.99621 * 5 2 1 7 7 N 1.31892 * 121.04093 * 179.97438 * 6 5 2 8 8 C 1.31735 * 121.86278 * 0.02562 * 7 6 5 9 9 C 1.39375 * 120.58366 * 359.97438 * 8 7 6 10 10 C 1.48274 * 120.53914 * 179.97438 * 9 8 7 11 11 C 1.39297 * 120.13341 * 129.98002 * 10 9 8 12 12 C 1.37972 * 119.97203 * 179.97438 * 11 10 9 13 13 C 1.38685 * 120.24032 * 0.06789 * 12 11 10 14 14 F 1.35099 * 119.86187 * 180.02562 * 13 12 11 15 15 C 1.38332 * 120.27339 * 359.97076 * 13 12 11 16 16 C 1.38704 * 120.02679 * 359.97438 * 15 13 12 17 17 O 1.35664 * 120.12117 * 179.74253 * 16 15 13 18 18 C 1.34813 * 117.00039 * 354.39075 * 17 16 15 19 19 H 1.07997 * 120.00044 * 5.04360 * 18 17 16 20 20 C 1.38656 * 119.99808 * 185.04993 * 18 17 16 21 21 N 1.31555 * 119.99583 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00133 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46609 * 90.00311 * 22 20 18 24 24 H 1.48491 * 109.47065 * 210.00238 * 22 20 18 25 25 H 1.48493 * 109.47098 * 330.00886 * 22 20 18 26 26 C 1.38396 * 120.35627 * 270.25586 * 5 2 1 27 27 H 1.08999 * 109.46760 * 308.37339 * 1 2 3 28 28 H 1.09003 * 109.46993 * 68.37296 * 1 2 3 29 29 H 1.08994 * 109.47049 * 188.37518 * 1 2 3 30 30 H 1.08002 * 119.47247 * 359.97438 * 6 5 2 31 31 H 1.08001 * 119.70900 * 180.02562 * 8 7 6 32 32 H 1.08002 * 120.01834 * 359.97316 * 11 10 9 33 33 H 1.07999 * 119.88136 * 180.02562 * 12 11 10 34 34 H 1.07996 * 119.98530 * 180.02562 * 15 13 12 35 35 H 0.96997 * 119.99795 * 179.97438 * 21 20 18 36 36 H 1.08005 * 120.84797 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2538 -0.6288 1.5861 6 6 2.4282 -1.9880 1.7755 7 7 2.7578 -2.4732 2.9568 8 6 2.9348 -1.6939 4.0040 9 6 2.7776 -0.3133 3.8952 10 6 2.9765 0.5629 5.0747 11 6 3.8018 1.6814 4.9837 12 6 3.9841 2.4948 6.0831 13 6 3.3493 2.2025 7.2811 14 9 3.5328 3.0045 8.3527 15 6 2.5282 1.0939 7.3829 16 6 2.3362 0.2692 6.2843 17 8 1.5355 -0.8214 6.3835 18 6 1.0486 -1.1141 7.6061 19 1 1.2335 -0.4469 8.4349 20 6 0.3106 -2.2719 7.7994 21 7 -0.1640 -2.5578 8.9926 22 14 -0.0096 -3.4258 6.3657 23 1 1.0809 -4.4306 6.2860 24 1 -1.3073 -4.1186 6.5683 25 1 -0.0568 -2.6454 5.1033 26 6 2.4232 0.2312 2.6571 27 1 -0.3633 0.6380 0.8057 28 1 -0.3633 0.3788 -0.9553 29 1 -0.3633 -1.0166 0.1497 30 1 2.2922 -2.6623 0.9429 31 1 3.2048 -2.1285 4.9551 32 1 4.2988 1.9119 4.0529 33 1 4.6239 3.3618 6.0108 34 1 2.0359 0.8709 8.3179 35 1 -0.6806 -3.3675 9.1278 36 1 2.2896 1.2964 2.5385 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239700958.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:30 Heat of formation + Delta-G solvation = -97.055864 kcal Electronic energy + Delta-G solvation = -26279.604633 eV Core-core repulsion = 22156.964388 eV Total energy + Delta-G solvation = -4122.640245 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.94152 -41.65875 -40.59836 -38.31315 -38.13182 -36.99524 -34.60212 -34.31855 -33.32391 -31.29345 -30.27598 -29.98980 -27.44550 -25.21968 -25.19005 -23.37094 -22.84262 -20.26358 -19.99478 -19.50536 -18.77679 -17.93919 -17.77636 -17.36208 -17.14376 -16.93423 -16.70165 -16.67691 -16.30785 -15.94517 -15.67158 -15.21613 -15.00345 -14.95221 -14.35101 -14.26327 -14.07097 -13.95970 -13.89611 -13.83931 -13.34607 -13.15184 -13.09669 -13.02640 -12.58951 -12.43101 -12.41342 -12.17276 -11.92173 -11.61950 -11.27151 -11.01181 -10.77655 -10.55567 -9.72870 -9.13988 -8.60211 -6.33255 -0.91246 -0.51547 -0.19590 0.35170 0.42668 1.24677 1.29742 1.42380 1.83973 2.16582 2.33100 2.56892 2.78677 2.93083 2.99312 3.06714 3.23777 3.30959 3.60633 3.75362 3.78941 3.87147 4.10186 4.11234 4.13826 4.18076 4.38679 4.40685 4.63630 4.69568 4.93082 4.99763 4.99987 5.14712 5.18306 5.28841 5.44487 5.59027 5.73714 5.98493 6.68899 6.73222 7.38870 8.50737 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.010186 B = 0.004790 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.240164 B = 5843.961820 C = 7931.459001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.630 4.630 2 S 2.526 3.474 3 O -0.963 6.963 4 O -0.964 6.964 5 C -0.714 4.714 6 C 0.175 3.825 7 N -0.517 5.517 8 C 0.152 3.848 9 C -0.095 4.095 10 C -0.137 4.137 11 C -0.019 4.019 12 C -0.207 4.207 13 C 0.141 3.859 14 F -0.145 7.145 15 C -0.274 4.274 16 C 0.172 3.828 17 O -0.217 6.217 18 C -0.400 4.400 19 H 0.085 0.915 20 C 0.025 3.975 21 N -0.912 5.912 22 Si 0.955 3.045 23 H -0.266 1.266 24 H -0.269 1.269 25 H -0.260 1.260 26 C 0.026 3.974 27 H 0.148 0.852 28 H 0.162 0.838 29 H 0.150 0.850 30 H 0.197 0.803 31 H 0.146 0.854 32 H 0.172 0.828 33 H 0.167 0.833 34 H 0.123 0.877 35 H 0.287 0.713 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.115 6.904 -17.982 19.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.784 4.784 2 S 2.704 3.296 3 O -0.960 6.960 4 O -0.961 6.961 5 C -0.798 4.798 6 C 0.017 3.983 7 N -0.225 5.225 8 C -0.003 4.003 9 C -0.098 4.098 10 C -0.139 4.139 11 C -0.037 4.037 12 C -0.226 4.226 13 C 0.122 3.878 14 F -0.124 7.124 15 C -0.294 4.294 16 C 0.120 3.880 17 O -0.123 6.123 18 C -0.476 4.476 19 H 0.103 0.897 20 C -0.175 4.175 21 N -0.551 5.551 22 Si 0.778 3.222 23 H -0.191 1.191 24 H -0.194 1.194 25 H -0.184 1.184 26 C 0.000 4.000 27 H 0.167 0.833 28 H 0.180 0.820 29 H 0.169 0.831 30 H 0.213 0.787 31 H 0.164 0.836 32 H 0.189 0.811 33 H 0.184 0.816 34 H 0.141 0.859 35 H 0.097 0.903 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.638 5.943 -18.441 19.554 hybrid contribution -0.808 -0.049 1.727 1.907 sum 1.830 5.895 -16.714 17.817 Atomic orbital electron populations 1.30085 1.19749 1.14244 1.14281 1.04660 0.79717 0.73174 0.72005 1.93548 1.79534 1.37247 1.85700 1.93549 1.79564 1.62255 1.60734 1.31846 1.20097 1.03991 1.23909 1.23109 0.87909 0.92409 0.94910 1.67773 1.14079 1.40286 1.00386 1.23213 0.89783 0.90486 0.96844 1.19622 1.02087 0.93998 0.94044 1.17901 1.05346 1.00183 0.90455 1.21070 0.93505 0.89886 0.99238 1.21043 1.06040 1.04619 0.90862 1.17703 0.97021 0.88687 0.84434 1.91453 1.93831 1.72049 1.55051 1.21079 1.08004 0.99144 1.01158 1.19091 0.89115 0.86827 0.92952 1.83542 1.56587 1.40112 1.32033 1.20672 1.33635 1.08698 0.84584 0.89727 1.25111 0.95185 0.97861 0.99391 1.69704 1.35363 1.27324 1.22729 0.85445 0.78569 0.78897 0.79338 1.19114 1.19374 1.18450 1.21723 0.87603 1.01367 0.89273 0.83337 0.82004 0.83115 0.78670 0.83628 0.81065 0.81573 0.85930 0.90330 0.80363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -4.29 10.80 113.37 1.22 -3.07 16 2 S 2.53 40.02 5.81 -56.49 -0.33 39.69 16 3 O -0.96 -20.61 17.20 -127.65 -2.20 -22.80 16 4 O -0.96 -20.64 17.14 -127.65 -2.19 -22.83 16 5 C -0.71 -15.89 5.67 22.33 0.13 -15.76 16 6 C 0.18 4.51 10.63 84.71 0.90 5.41 16 7 N -0.52 -17.12 10.35 -194.89 -2.02 -19.14 16 8 C 0.15 5.38 9.97 84.98 0.85 6.22 16 9 C -0.09 -3.00 5.28 -19.95 -0.11 -3.11 16 10 C -0.14 -4.55 5.51 -19.93 -0.11 -4.66 16 11 C -0.02 -0.50 9.53 22.46 0.21 -0.28 16 12 C -0.21 -5.49 10.01 22.31 0.22 -5.26 16 13 C 0.14 4.81 7.29 22.40 0.16 4.98 16 14 F -0.15 -4.93 17.26 44.97 0.78 -4.16 16 15 C -0.27 -11.27 9.13 22.40 0.20 -11.06 16 16 C 0.17 7.15 6.57 22.81 0.15 7.30 16 17 O -0.22 -10.51 6.95 -21.61 -0.15 -10.66 16 18 C -0.40 -21.80 9.95 67.92 0.68 -21.12 16 19 H 0.09 4.89 5.44 -2.91 -0.02 4.88 16 20 C 0.03 1.37 5.49 84.83 0.47 1.83 16 21 N -0.91 -52.04 13.96 21.61 0.30 -51.74 16 22 Si 0.95 43.36 28.62 68.60 1.96 45.32 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 25 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 26 C 0.03 0.65 9.11 22.69 0.21 0.85 16 27 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.16 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.15 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.20 3.76 7.57 -2.91 -0.02 3.74 16 31 H 0.15 5.56 7.69 -2.91 -0.02 5.54 16 32 H 0.17 3.10 8.05 -2.91 -0.02 3.08 16 33 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 34 H 0.12 5.66 5.64 -2.91 -0.02 5.64 16 35 H 0.29 15.08 8.31 -92.71 -0.77 14.31 16 36 H 0.18 3.38 7.66 -2.91 -0.02 3.35 16 Total: -1.00 -74.11 336.39 2.49 -71.62 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 1.15 Total: 12.43 kcal Atomic # 6 Polarization: -42.91 SS G_CDS: 5.19 Total: -37.73 kcal Atomic # 7 Polarization: -69.17 SS G_CDS: -1.71 Total: -70.88 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: -4.53 Total: -56.29 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.78 Total: -4.16 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.96 Total: 45.32 kcal Atomic # 16 Polarization: 40.02 SS G_CDS: -0.33 Total: 39.69 kcal Total: -74.11 2.49 -71.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239700958.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.435 kcal (2) G-P(sol) polarization free energy of solvation -74.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds