Wall clock time and date at job start Tue Mar 31 2020 20:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42102 * 110.53894 * 2 1 4 4 O 1.42097 * 110.54365 * 223.24605 * 2 1 3 5 5 C 1.76195 * 104.44889 * 111.62208 * 2 1 3 6 6 C 1.38331 * 119.47918 * 270.02545 * 5 2 1 7 7 C 1.38398 * 119.28677 * 179.69749 * 6 5 2 8 8 C 1.39820 * 118.31146 * 0.54035 * 7 6 5 9 9 C 1.48269 * 120.54452 * 179.73041 * 8 7 6 10 10 C 1.39300 * 120.13956 * 309.70455 * 9 8 7 11 11 C 1.37963 * 119.97269 * 180.02562 * 10 9 8 12 12 C 1.38677 * 120.24663 * 359.97438 * 11 10 9 13 13 F 1.35097 * 119.86635 * 180.02562 * 12 11 10 14 14 C 1.38336 * 120.27132 * 359.79114 * 12 11 10 15 15 C 1.38706 * 120.02362 * 0.46050 * 14 12 11 16 16 O 1.35664 * 120.11857 * 179.79207 * 15 14 12 17 17 C 1.34810 * 117.00418 * 5.60633 * 16 15 14 18 18 H 1.07997 * 119.99733 * 354.93711 * 17 16 15 19 19 C 1.38648 * 120.00071 * 174.66252 * 17 16 15 20 20 N 1.31553 * 119.99969 * 0.26950 * 19 17 16 21 21 Si 1.86800 * 119.99791 * 180.27611 * 19 17 16 22 22 H 1.48501 * 109.47435 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47140 * 119.99831 * 21 19 17 24 24 H 1.48495 * 109.47051 * 239.99399 * 21 19 17 25 25 C 1.39369 * 118.91018 * 359.46254 * 8 7 6 26 26 N 1.31739 * 120.59286 * 0.26949 * 25 8 7 27 27 H 1.08998 * 109.47785 * 308.37699 * 1 2 3 28 28 H 1.09006 * 109.47219 * 68.38082 * 1 2 3 29 29 H 1.09004 * 109.47101 * 188.37209 * 1 2 3 30 30 H 1.07994 * 120.35333 * 359.97438 * 6 5 2 31 31 H 1.08005 * 120.84298 * 180.29758 * 7 6 5 32 32 H 1.08004 * 120.01205 * 0.03565 * 10 9 8 33 33 H 1.08004 * 119.87877 * 179.97438 * 11 10 9 34 34 H 1.08002 * 119.99102 * 180.23768 * 14 12 11 35 35 H 0.97004 * 120.00219 * 179.97438 * 20 19 17 36 36 H 1.08003 * 119.70338 * 180.25602 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9116 5 6 2.2537 -0.6287 1.5862 6 6 2.4230 0.2478 2.6428 7 6 2.7622 -0.2509 3.8885 8 6 2.9323 -1.6319 4.0260 9 6 3.3016 -2.2188 5.3365 10 6 4.3777 -1.7035 6.0554 11 6 4.7186 -2.2526 7.2743 12 6 3.9932 -3.3169 7.7884 13 9 4.3335 -3.8483 8.9829 14 6 2.9197 -3.8335 7.0853 15 6 2.5704 -3.2934 5.8564 16 8 1.5205 -3.8013 5.1633 17 6 0.7863 -4.7525 5.7744 18 1 1.0919 -5.1354 6.7368 19 6 -0.3643 -5.2353 5.1698 20 7 -0.7366 -4.7688 3.9974 21 14 -1.3858 -6.5478 6.0202 22 1 -0.7573 -6.9003 7.3186 23 1 -2.7572 -6.0304 6.2589 24 1 -1.4555 -7.7557 5.1592 25 6 2.7436 -2.4482 2.9123 26 7 2.4156 -1.9277 1.7474 27 1 -0.3634 0.6380 0.8056 28 1 -0.3634 0.3786 -0.9554 29 1 -0.3633 -1.0168 0.1496 30 1 2.2876 1.3094 2.4983 31 1 2.8959 0.4102 4.7320 32 1 4.9448 -0.8743 5.6589 33 1 5.5535 -1.8521 7.8302 34 1 2.3556 -4.6599 7.4917 35 1 -1.5414 -5.1068 3.5743 36 1 2.8677 -3.5171 3.0050 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240808371.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:27 Heat of formation + Delta-G solvation = -76.736625 kcal Electronic energy + Delta-G solvation = -26030.897793 eV Core-core repulsion = 21909.138656 eV Total energy + Delta-G solvation = -4121.759137 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.51100 -40.13669 -38.97426 -37.01718 -36.64607 -35.85809 -32.96991 -32.59591 -31.75877 -29.71688 -29.53317 -28.52495 -25.73873 -24.07500 -23.47301 -21.99295 -21.23078 -19.15566 -18.54193 -17.87670 -17.67332 -16.56592 -16.26868 -16.15033 -15.57809 -15.44625 -15.29929 -15.14833 -14.52383 -14.42454 -13.98725 -13.88207 -13.65963 -13.52012 -13.33525 -13.19248 -13.03922 -12.78970 -12.54682 -12.02155 -11.94188 -11.90105 -11.54888 -11.51232 -11.18217 -11.01054 -10.94923 -10.83086 -10.61087 -9.90133 -9.71924 -9.33109 -9.17899 -9.12906 -8.24119 -7.56328 -6.75175 -4.34504 0.07903 0.73758 1.47364 1.74098 1.90509 2.85334 2.96802 2.98946 3.04827 3.61475 3.71990 4.00104 4.11370 4.17155 4.59621 4.67524 4.75540 4.78502 4.85836 4.93904 5.03878 5.16478 5.27996 5.33496 5.47230 5.51712 5.64758 5.75668 5.87156 6.04532 6.17320 6.32361 6.46840 6.61434 6.66421 6.79047 6.87725 7.04612 7.36726 7.66538 7.98567 8.68360 9.27115 10.39796 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.010278 B = 0.004221 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.640981 B = 6632.546807 C = 8985.842014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.646 4.646 2 S 2.513 3.487 3 O -0.942 6.942 4 O -0.922 6.922 5 C -0.451 4.451 6 C -0.090 4.090 7 C -0.097 4.097 8 C 0.003 3.997 9 C -0.162 4.162 10 C -0.022 4.022 11 C -0.249 4.249 12 C 0.154 3.846 13 F -0.148 7.148 14 C -0.268 4.268 15 C 0.188 3.812 16 O -0.151 6.151 17 C -0.399 4.399 18 H 0.098 0.902 19 C 0.047 3.953 20 N -0.843 5.843 21 Si 0.944 3.056 22 H -0.264 1.264 23 H -0.274 1.274 24 H -0.272 1.272 25 C 0.117 3.883 26 N -0.388 5.388 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.138 0.862 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.144 0.856 35 H 0.275 0.725 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.398 8.462 -1.115 8.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.797 4.797 2 S 2.690 3.310 3 O -0.939 6.939 4 O -0.919 6.919 5 C -0.670 4.670 6 C -0.112 4.112 7 C -0.123 4.123 8 C 0.000 4.000 9 C -0.164 4.164 10 C -0.041 4.041 11 C -0.269 4.269 12 C 0.135 3.865 13 F -0.126 7.126 14 C -0.288 4.288 15 C 0.131 3.869 16 O -0.052 6.052 17 C -0.474 4.474 18 H 0.115 0.885 19 C -0.161 4.161 20 N -0.475 5.475 21 Si 0.768 3.232 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.198 1.198 25 C -0.045 4.045 26 N -0.097 5.097 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.157 0.843 30 H 0.166 0.834 31 H 0.159 0.841 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.162 0.838 35 H 0.085 0.915 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.527 8.161 -2.879 9.016 hybrid contribution -0.868 -0.596 2.408 2.628 sum 1.659 7.566 -0.471 7.760 Atomic orbital electron populations 1.30175 1.25327 1.12775 1.11439 1.05029 0.77983 0.74175 0.73778 1.93576 1.77903 1.36453 1.85939 1.93580 1.76964 1.60941 1.60394 1.32827 1.15228 0.97818 1.21169 1.21764 0.96090 1.00637 0.92678 1.21709 0.98395 0.94748 0.97455 1.19869 0.92937 0.93444 0.93734 1.17682 1.01993 1.00476 0.96281 1.20520 0.93951 0.97148 0.92443 1.20469 1.05253 1.01712 0.99469 1.17561 0.94688 0.93405 0.80873 1.91437 1.91754 1.85594 1.43866 1.21001 1.02062 1.07397 0.98310 1.18896 0.88594 0.90076 0.89347 1.83966 1.33581 1.48393 1.39228 1.21486 1.05403 1.15367 1.05113 0.88507 1.25360 0.96202 0.98496 0.96024 1.70034 1.23612 1.39990 1.13882 0.85599 0.79252 0.79230 0.79163 1.18851 1.19903 1.19772 1.23192 0.93834 1.00899 0.86580 1.67705 1.06132 1.10453 1.25405 0.85098 0.85078 0.84332 0.83402 0.84103 0.85562 0.85797 0.83848 0.91506 0.81469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -5.97 10.80 101.05 1.09 -4.88 16 2 S 2.51 32.98 5.86 -107.50 -0.63 32.35 16 3 O -0.94 -13.41 17.09 -57.54 -0.98 -14.39 16 4 O -0.92 -15.56 17.72 -57.54 -1.02 -16.58 16 5 C -0.45 -7.27 6.53 -17.49 -0.11 -7.38 16 6 C -0.09 -1.30 9.49 -39.49 -0.37 -1.67 16 7 C -0.10 -1.47 9.69 -38.93 -0.38 -1.85 16 8 C 0.00 0.05 5.28 -104.76 -0.55 -0.51 16 9 C -0.16 -2.98 5.51 -104.72 -0.58 -3.56 16 10 C -0.02 -0.34 9.53 -39.29 -0.37 -0.72 16 11 C -0.25 -3.90 10.01 -39.52 -0.40 -4.29 16 12 C 0.15 2.74 7.29 -39.38 -0.29 2.45 16 13 F -0.15 -2.56 17.26 2.25 0.04 -2.52 16 14 C -0.27 -5.32 9.14 -39.37 -0.36 -5.68 16 15 C 0.19 3.99 6.56 -38.75 -0.25 3.74 16 16 O -0.15 -3.74 8.13 0.37 0.00 -3.74 16 17 C -0.40 -9.95 9.49 30.88 0.29 -9.66 16 18 H 0.10 2.26 5.21 -52.49 -0.27 1.99 16 19 C 0.05 1.16 5.49 -17.52 -0.10 1.06 16 20 N -0.84 -22.33 13.67 55.48 0.76 -21.57 16 21 Si 0.94 18.86 29.55 -169.99 -5.02 13.84 16 22 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 23 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 25 C 0.12 2.32 9.97 -17.17 -0.17 2.15 16 26 N -0.39 -7.48 10.02 -12.15 -0.12 -7.60 16 27 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.13 0.86 8.14 -51.92 -0.42 0.44 16 29 H 0.14 1.37 8.14 -51.92 -0.42 0.95 16 30 H 0.15 1.62 7.55 -52.49 -0.40 1.23 16 31 H 0.14 1.71 8.06 -52.48 -0.42 1.28 16 32 H 0.13 1.56 8.05 -52.48 -0.42 1.14 16 33 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 34 H 0.14 2.88 5.64 -52.49 -0.30 2.59 16 35 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.17 3.44 7.70 -52.48 -0.40 3.04 16 LS Contribution 338.41 15.07 5.10 5.10 Total: -1.00 -32.35 338.41 -7.47 -39.82 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -3.04 Total: 6.09 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: -2.55 Total: -30.80 kcal Atomic # 7 Polarization: -29.81 SS G_CDS: 0.64 Total: -29.17 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -2.00 Total: -34.71 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.84 kcal Atomic # 16 Polarization: 32.98 SS G_CDS: -0.63 Total: 32.35 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.35 -7.47 -39.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240808371.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.915 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds