Wall clock time and date at job start Tue Mar 31 2020 20:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42102 * 110.53894 * 2 1 4 4 O 1.42097 * 110.54365 * 223.24605 * 2 1 3 5 5 C 1.76195 * 104.44889 * 111.62208 * 2 1 3 6 6 C 1.38331 * 119.47918 * 270.02545 * 5 2 1 7 7 C 1.38398 * 119.28677 * 179.69749 * 6 5 2 8 8 C 1.39820 * 118.31146 * 0.54035 * 7 6 5 9 9 C 1.48269 * 120.54452 * 179.73041 * 8 7 6 10 10 C 1.39300 * 120.13956 * 309.70455 * 9 8 7 11 11 C 1.37963 * 119.97269 * 180.02562 * 10 9 8 12 12 C 1.38677 * 120.24663 * 359.97438 * 11 10 9 13 13 F 1.35097 * 119.86635 * 180.02562 * 12 11 10 14 14 C 1.38336 * 120.27132 * 359.79114 * 12 11 10 15 15 C 1.38706 * 120.02362 * 0.46050 * 14 12 11 16 16 O 1.35664 * 120.11857 * 179.79207 * 15 14 12 17 17 C 1.34810 * 117.00418 * 5.60633 * 16 15 14 18 18 H 1.07997 * 119.99733 * 354.93711 * 17 16 15 19 19 C 1.38648 * 120.00071 * 174.66252 * 17 16 15 20 20 N 1.31553 * 119.99969 * 0.26950 * 19 17 16 21 21 Si 1.86800 * 119.99791 * 180.27611 * 19 17 16 22 22 H 1.48501 * 109.47435 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47140 * 119.99831 * 21 19 17 24 24 H 1.48495 * 109.47051 * 239.99399 * 21 19 17 25 25 C 1.39369 * 118.91018 * 359.46254 * 8 7 6 26 26 N 1.31739 * 120.59286 * 0.26949 * 25 8 7 27 27 H 1.08998 * 109.47785 * 308.37699 * 1 2 3 28 28 H 1.09006 * 109.47219 * 68.38082 * 1 2 3 29 29 H 1.09004 * 109.47101 * 188.37209 * 1 2 3 30 30 H 1.07994 * 120.35333 * 359.97438 * 6 5 2 31 31 H 1.08005 * 120.84298 * 180.29758 * 7 6 5 32 32 H 1.08004 * 120.01205 * 0.03565 * 10 9 8 33 33 H 1.08004 * 119.87877 * 179.97438 * 11 10 9 34 34 H 1.08002 * 119.99102 * 180.23768 * 14 12 11 35 35 H 0.97004 * 120.00219 * 179.97438 * 20 19 17 36 36 H 1.08003 * 119.70338 * 180.25602 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9116 5 6 2.2537 -0.6287 1.5862 6 6 2.4230 0.2478 2.6428 7 6 2.7622 -0.2509 3.8885 8 6 2.9323 -1.6319 4.0260 9 6 3.3016 -2.2188 5.3365 10 6 4.3777 -1.7035 6.0554 11 6 4.7186 -2.2526 7.2743 12 6 3.9932 -3.3169 7.7884 13 9 4.3335 -3.8483 8.9829 14 6 2.9197 -3.8335 7.0853 15 6 2.5704 -3.2934 5.8564 16 8 1.5205 -3.8013 5.1633 17 6 0.7863 -4.7525 5.7744 18 1 1.0919 -5.1354 6.7368 19 6 -0.3643 -5.2353 5.1698 20 7 -0.7366 -4.7688 3.9974 21 14 -1.3858 -6.5478 6.0202 22 1 -0.7573 -6.9003 7.3186 23 1 -2.7572 -6.0304 6.2589 24 1 -1.4555 -7.7557 5.1592 25 6 2.7436 -2.4482 2.9123 26 7 2.4156 -1.9277 1.7474 27 1 -0.3634 0.6380 0.8056 28 1 -0.3634 0.3786 -0.9554 29 1 -0.3633 -1.0168 0.1496 30 1 2.2876 1.3094 2.4983 31 1 2.8959 0.4102 4.7320 32 1 4.9448 -0.8743 5.6589 33 1 5.5535 -1.8521 7.8302 34 1 2.3556 -4.6599 7.4917 35 1 -1.5414 -5.1068 3.5743 36 1 2.8677 -3.5171 3.0050 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240808371.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:26 Heat of formation + Delta-G solvation = -99.817060 kcal Electronic energy + Delta-G solvation = -26031.898635 eV Core-core repulsion = 21909.138656 eV Total energy + Delta-G solvation = -4122.759979 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.92665 -41.53113 -40.45674 -38.17934 -38.14055 -37.00644 -34.44875 -34.24847 -33.04764 -31.16383 -30.40074 -29.90049 -27.49608 -25.39052 -24.83232 -23.48814 -22.62935 -20.30578 -20.15655 -19.35538 -18.91738 -17.88977 -17.59816 -17.21147 -17.10605 -16.96164 -16.64635 -16.39689 -16.00543 -15.79594 -15.46582 -15.35389 -15.09127 -14.98949 -14.41341 -14.14761 -14.06566 -13.98153 -13.93048 -13.55326 -13.16921 -13.06364 -13.03962 -12.93012 -12.61583 -12.36132 -12.29316 -12.15485 -11.92132 -11.58528 -11.04540 -10.88580 -10.64549 -10.49325 -9.69183 -9.07910 -8.54852 -6.22997 -0.93731 -0.56436 0.18837 0.31596 0.46953 1.33816 1.39571 1.49929 1.77907 2.09906 2.34632 2.62088 2.96571 2.98886 3.03466 3.16654 3.35521 3.51471 3.70902 3.87899 3.90751 3.99892 4.08634 4.14913 4.20902 4.29221 4.38195 4.55739 4.72212 4.82584 4.94166 4.98112 5.05080 5.12100 5.19679 5.28887 5.43468 5.56397 5.89294 5.94429 6.64944 6.88689 7.58177 8.64685 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.010278 B = 0.004221 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.640981 B = 6632.546807 C = 8985.842014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.624 4.624 2 S 2.524 3.476 3 O -0.951 6.951 4 O -0.967 6.967 5 C -0.462 4.462 6 C -0.086 4.086 7 C -0.085 4.085 8 C -0.019 4.019 9 C -0.159 4.159 10 C -0.011 4.011 11 C -0.219 4.219 12 C 0.146 3.854 13 F -0.144 7.144 14 C -0.283 4.283 15 C 0.163 3.837 16 O -0.194 6.194 17 C -0.419 4.419 18 H 0.101 0.899 19 C -0.007 4.007 20 N -0.898 5.898 21 Si 1.011 2.989 22 H -0.255 1.255 23 H -0.268 1.268 24 H -0.270 1.270 25 C 0.091 3.909 26 N -0.421 5.421 27 H 0.158 0.842 28 H 0.167 0.833 29 H 0.133 0.867 30 H 0.191 0.809 31 H 0.181 0.819 32 H 0.172 0.828 33 H 0.165 0.835 34 H 0.130 0.870 35 H 0.275 0.725 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.140 11.623 0.047 12.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.779 4.779 2 S 2.703 3.297 3 O -0.948 6.948 4 O -0.965 6.965 5 C -0.680 4.680 6 C -0.106 4.106 7 C -0.111 4.111 8 C -0.021 4.021 9 C -0.161 4.161 10 C -0.029 4.029 11 C -0.239 4.239 12 C 0.127 3.873 13 F -0.123 7.123 14 C -0.303 4.303 15 C 0.109 3.891 16 O -0.098 6.098 17 C -0.495 4.495 18 H 0.118 0.882 19 C -0.208 4.208 20 N -0.534 5.534 21 Si 0.831 3.169 22 H -0.179 1.179 23 H -0.193 1.193 24 H -0.195 1.195 25 C -0.070 4.070 26 N -0.130 5.130 27 H 0.176 0.824 28 H 0.185 0.815 29 H 0.152 0.848 30 H 0.208 0.792 31 H 0.198 0.802 32 H 0.189 0.811 33 H 0.183 0.817 34 H 0.148 0.852 35 H 0.084 0.916 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.373 11.317 -1.648 11.924 hybrid contribution -0.860 -1.302 2.061 2.585 sum 2.512 10.015 0.413 10.334 Atomic orbital electron populations 1.30017 1.19663 1.13488 1.14690 1.04803 0.79911 0.72955 0.72057 1.93552 1.79628 1.36084 1.85492 1.93527 1.79438 1.62234 1.61255 1.33533 1.14181 0.96921 1.23321 1.22288 0.94258 1.02366 0.91725 1.22161 0.96384 0.93545 0.99047 1.19919 0.94498 0.94872 0.92825 1.18047 1.02082 0.99428 0.96526 1.21017 0.92502 0.97636 0.91764 1.20983 1.04596 0.99273 0.99004 1.17687 0.94480 0.94131 0.80999 1.91448 1.91578 1.85697 1.43540 1.21025 1.03220 1.07577 0.98514 1.19428 0.88432 0.91157 0.90064 1.83974 1.35477 1.49886 1.40472 1.21811 1.06064 1.16104 1.05491 0.88206 1.26408 0.97162 1.00582 0.96622 1.70160 1.24694 1.42645 1.15890 0.84630 0.77592 0.76409 0.78300 1.17864 1.19261 1.19475 1.22913 0.95899 1.00144 0.88093 1.67628 1.07318 1.12563 1.25480 0.82376 0.81505 0.84844 0.79228 0.80171 0.81090 0.81704 0.85236 0.91614 0.84546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -9.67 10.80 113.37 1.22 -8.45 16 2 S 2.52 63.00 5.86 -56.49 -0.33 62.67 16 3 O -0.95 -24.77 17.09 -127.65 -2.18 -26.95 16 4 O -0.97 -33.14 17.72 -127.65 -2.26 -35.40 16 5 C -0.46 -14.59 6.53 84.71 0.55 -14.04 16 6 C -0.09 -2.23 9.49 22.33 0.21 -2.02 16 7 C -0.09 -2.35 9.69 22.69 0.22 -2.13 16 8 C -0.02 -0.68 5.28 -19.95 -0.11 -0.79 16 9 C -0.16 -5.74 5.51 -19.93 -0.11 -5.85 16 10 C -0.01 -0.31 9.53 22.46 0.21 -0.09 16 11 C -0.22 -5.94 10.01 22.31 0.22 -5.72 16 12 C 0.15 4.96 7.29 22.40 0.16 5.12 16 13 F -0.14 -4.71 17.26 44.97 0.78 -3.94 16 14 C -0.28 -11.55 9.14 22.41 0.20 -11.34 16 15 C 0.16 7.18 6.56 22.81 0.15 7.33 16 16 O -0.19 -10.33 8.13 -21.58 -0.18 -10.51 16 17 C -0.42 -22.40 9.49 67.92 0.64 -21.76 16 18 H 0.10 5.00 5.21 -2.91 -0.02 4.98 16 19 C -0.01 -0.37 5.49 84.83 0.47 0.09 16 20 N -0.90 -50.89 13.67 21.61 0.30 -50.59 16 21 Si 1.01 40.48 29.55 68.60 2.03 42.51 16 22 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 23 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 24 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 25 C 0.09 3.82 9.97 84.98 0.85 4.67 16 26 N -0.42 -16.93 10.02 -192.36 -1.93 -18.86 16 27 H 0.16 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.17 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.19 3.26 7.55 -2.91 -0.02 3.24 16 31 H 0.18 3.43 8.06 -2.91 -0.02 3.41 16 32 H 0.17 3.18 8.05 -2.91 -0.02 3.16 16 33 H 0.17 3.25 8.06 -2.91 -0.02 3.22 16 34 H 0.13 5.53 5.64 -2.91 -0.02 5.51 16 35 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 36 H 0.14 6.35 7.70 -2.91 -0.02 6.33 16 Total: -1.00 -77.65 338.41 2.27 -75.38 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 1.15 Total: 20.66 kcal Atomic # 6 Polarization: -59.87 SS G_CDS: 4.91 Total: -54.97 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: -1.63 Total: -69.45 kcal Atomic # 8 Polarization: -68.24 SS G_CDS: -4.62 Total: -72.86 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.78 Total: -3.94 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Atomic # 16 Polarization: 63.00 SS G_CDS: -0.33 Total: 62.67 kcal Total: -77.65 2.27 -75.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240808371.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.441 kcal (2) G-P(sol) polarization free energy of solvation -77.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds