Wall clock time and date at job start Tue Mar 31 2020 20:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86799 * 119.99676 * 2 1 4 4 H 1.48493 * 109.47435 * 269.99904 * 3 2 1 5 5 H 1.48494 * 109.47439 * 30.00255 * 3 2 1 6 6 H 1.48503 * 109.46800 * 149.99974 * 3 2 1 7 7 C 1.38647 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00179 * 0.02562 * 7 2 1 9 9 O 1.34812 * 119.99663 * 179.97438 * 7 2 1 10 10 C 1.35667 * 116.99957 * 185.05357 * 9 7 2 11 11 C 1.38758 * 120.13180 * 354.40689 * 10 9 7 12 12 C 1.38110 * 120.04849 * 179.97438 * 11 10 9 13 13 C 1.38447 * 120.32372 * 359.97438 * 12 11 10 14 14 C 1.38009 * 120.27015 * 0.02562 * 13 12 11 15 15 C 1.39286 * 119.94640 * 359.97438 * 14 13 12 16 16 C 1.48287 * 120.16283 * 180.02562 * 15 14 13 17 17 C 1.39419 * 120.11692 * 310.00692 * 16 15 14 18 18 C 1.37984 * 119.92648 * 179.97438 * 17 16 15 19 19 C 1.38321 * 120.15496 * 359.97438 * 18 17 16 20 20 S 1.76195 * 119.88838 * 180.02562 * 19 18 17 21 21 N 1.65592 * 107.21736 * 115.00075 * 20 19 18 22 22 O 1.42097 * 106.40341 * 228.54395 * 20 19 18 23 23 O 1.42110 * 106.40355 * 1.46279 * 20 19 18 24 24 C 1.38532 * 120.22638 * 0.02562 * 19 18 17 25 25 F 1.35100 * 119.96117 * 180.02562 * 24 19 18 26 26 C 1.38260 * 120.07485 * 359.74212 * 24 19 18 27 27 H 0.97001 * 119.99399 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.97869 * 359.97015 * 11 10 9 29 29 H 1.08000 * 119.84187 * 180.27075 * 12 11 10 30 30 H 1.07995 * 119.86480 * 180.02562 * 13 12 11 31 31 H 1.08006 * 120.02671 * 180.02562 * 14 13 12 32 32 H 1.08004 * 120.03422 * 359.95193 * 17 16 15 33 33 H 1.08004 * 119.92593 * 180.02562 * 18 17 16 34 34 H 0.97001 * 120.00793 * 0.02562 * 21 20 19 35 35 H 0.97007 * 120.00379 * 180.02562 * 21 20 19 36 36 H 1.07995 * 120.07529 * 180.27811 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4471 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3570 -1.2007 0.0000 10 6 3.9729 -2.4048 -0.1059 11 6 3.2250 -3.5735 -0.0907 12 6 3.8537 -4.7984 -0.1992 13 6 5.2308 -4.8686 -0.3240 14 6 5.9876 -3.7146 -0.3406 15 6 5.3652 -2.4733 -0.2320 16 6 6.1736 -1.2304 -0.2498 17 6 7.2826 -1.1051 0.5857 18 6 8.0324 0.0531 0.5656 19 6 7.6867 1.0900 -0.2821 20 16 8.6495 2.5655 -0.3026 21 7 9.3487 2.6737 -1.7998 22 8 7.7307 3.6455 -0.2098 23 8 9.7099 2.3656 0.6220 24 6 6.5860 0.9723 -1.1150 25 9 6.2534 1.9882 -1.9412 26 6 5.8309 -0.1858 -1.1060 27 1 -0.4849 0.8401 -0.0004 28 1 2.1504 -3.5253 0.0060 29 1 3.2680 -5.7057 -0.1914 30 1 5.7147 -5.8303 -0.4087 31 1 7.0616 -3.7740 -0.4385 32 1 7.5543 -1.9136 1.2483 33 1 8.8918 0.1499 1.2125 34 1 9.1826 1.9862 -2.4636 35 1 9.9245 3.4247 -2.0131 36 1 4.9754 -0.2792 -1.7585 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585123.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:20 Heat of formation + Delta-G solvation = -90.633190 kcal Electronic energy + Delta-G solvation = -26610.444281 eV Core-core repulsion = 22488.082544 eV Total energy + Delta-G solvation = -4122.361737 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.14415 -39.89857 -38.52129 -37.14551 -36.74050 -35.88307 -33.36215 -32.82080 -32.44318 -30.72665 -29.57700 -28.85573 -25.51383 -23.95330 -23.02440 -21.49307 -21.09117 -19.70696 -18.60482 -18.11986 -17.81974 -17.52698 -16.87471 -16.58051 -16.08302 -15.75556 -15.35897 -15.28452 -14.94820 -14.39914 -14.28338 -13.98144 -13.90905 -13.72874 -13.30645 -12.66913 -12.58844 -12.40142 -12.34188 -12.25565 -12.11800 -12.00650 -11.80871 -11.53049 -11.23417 -11.01522 -10.91348 -10.73873 -10.64879 -10.30308 -9.62743 -9.55687 -9.03783 -8.86600 -8.32215 -7.58983 -6.60556 -4.27578 0.25724 0.54782 1.18409 1.80288 2.02871 2.97125 3.14644 3.21311 3.31532 3.35208 3.57074 3.96574 4.10386 4.22147 4.43343 4.54428 4.73442 4.83848 4.93175 5.14734 5.30387 5.36295 5.48482 5.63416 5.67330 5.74626 5.80499 5.92537 5.98134 6.04125 6.27822 6.40387 6.47191 6.72099 6.83077 6.84259 6.93484 7.04261 7.34877 7.56202 7.81733 8.73152 9.29907 10.45558 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.011613 B = 0.004981 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.535289 B = 5620.354387 C = 7542.492033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.072 3.928 3 Si 0.889 3.111 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.255 1.255 7 C -0.394 4.394 8 H 0.110 0.890 9 O -0.201 6.201 10 C 0.178 3.822 11 C -0.219 4.219 12 C -0.060 4.060 13 C -0.209 4.209 14 C -0.049 4.049 15 C -0.163 4.163 16 C 0.087 3.913 17 C -0.149 4.149 18 C 0.006 3.994 19 C -0.729 4.729 20 S 2.705 3.295 21 N -1.249 6.249 22 O -0.955 6.955 23 O -0.965 6.965 24 C 0.191 3.809 25 F -0.123 7.123 26 C -0.153 4.153 27 H 0.283 0.717 28 H 0.138 0.862 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.141 0.859 33 H 0.152 0.848 34 H 0.417 0.583 35 H 0.419 0.581 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.679 -2.333 -3.558 17.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.133 4.133 3 Si 0.713 3.287 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.178 1.178 7 C -0.469 4.469 8 H 0.128 0.872 9 O -0.104 6.104 10 C 0.124 3.876 11 C -0.238 4.238 12 C -0.079 4.079 13 C -0.228 4.228 14 C -0.067 4.067 15 C -0.165 4.165 16 C 0.086 3.914 17 C -0.168 4.168 18 C -0.013 4.013 19 C -0.817 4.817 20 S 2.794 3.206 21 N -0.923 5.923 22 O -0.945 6.945 23 O -0.954 6.954 24 C 0.170 3.830 25 F -0.101 7.101 26 C -0.172 4.172 27 H 0.093 0.907 28 H 0.156 0.844 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.137 0.863 32 H 0.159 0.841 33 H 0.170 0.830 34 H 0.243 0.757 35 H 0.250 0.750 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 16.506 -1.294 -2.675 16.772 hybrid contribution -0.345 0.186 -0.814 0.903 sum 16.162 -1.108 -3.488 16.571 Atomic orbital electron populations 1.69629 1.05587 1.28950 1.46128 1.24440 0.94993 0.98804 0.95085 0.86421 0.80878 0.81545 0.79823 1.19194 1.20221 1.17839 1.20794 0.76494 0.96813 1.52786 0.87236 1.83576 1.22950 1.25488 1.78371 1.18994 0.90311 0.85878 0.92459 1.21266 1.01379 0.91593 1.09589 1.20963 0.94417 0.96855 0.95622 1.20612 0.93996 0.97389 1.10755 1.20698 0.98669 0.90566 0.96809 1.17749 0.90039 0.91855 1.16811 1.18822 0.90982 0.91916 0.89680 1.21424 0.96124 0.98663 1.00561 1.20706 0.97425 0.90254 0.92932 1.30289 1.14619 1.23718 1.13111 1.01407 0.73615 0.73154 0.72465 1.53007 1.67742 1.37344 1.34240 1.93641 1.64160 1.51491 1.85159 1.93578 1.55163 1.85787 1.60911 1.16970 0.92908 0.85028 0.88094 1.91599 1.91766 1.57539 1.69243 1.21426 1.01153 0.92310 1.02317 0.90651 0.84425 0.86788 0.86870 0.86328 0.84150 0.83000 0.75657 0.75049 0.83321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.13 13.96 55.48 0.77 -23.36 16 2 C 0.07 1.96 5.49 -17.51 -0.10 1.86 16 3 Si 0.89 21.63 28.62 -169.99 -4.86 16.77 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.25 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.39 -10.41 9.95 30.88 0.31 -10.10 16 8 H 0.11 2.93 5.44 -52.49 -0.29 2.64 16 9 O -0.20 -4.87 6.96 0.35 0.00 -4.87 16 10 C 0.18 3.72 6.56 -38.74 -0.25 3.47 16 11 C -0.22 -4.24 9.16 -39.44 -0.36 -4.61 16 12 C -0.06 -0.95 10.03 -39.55 -0.40 -1.35 16 13 C -0.21 -2.98 10.03 -39.59 -0.40 -3.38 16 14 C -0.05 -0.72 9.51 -39.28 -0.37 -1.10 16 15 C -0.16 -2.89 5.49 -104.73 -0.57 -3.46 16 16 C 0.09 1.46 5.27 -104.91 -0.55 0.91 16 17 C -0.15 -2.08 9.51 -39.23 -0.37 -2.45 16 18 C 0.01 0.08 9.53 -39.64 -0.38 -0.30 16 19 C -0.73 -10.63 5.89 -39.44 -0.23 -10.86 16 20 S 2.71 35.71 5.92 -107.50 -0.64 35.07 16 21 N -1.25 -10.67 9.55 60.35 0.58 -10.09 16 22 O -0.96 -16.48 17.42 -57.17 -1.00 -17.48 16 23 O -0.96 -14.00 16.96 -57.17 -0.97 -14.97 16 24 C 0.19 3.19 7.20 -39.47 -0.28 2.90 16 25 F -0.12 -2.09 16.26 2.25 0.04 -2.05 16 26 C -0.15 -2.73 8.77 -39.16 -0.34 -3.07 16 27 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.14 2.81 5.64 -52.48 -0.30 2.51 16 29 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 30 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.12 1.38 8.04 -52.48 -0.42 0.95 16 32 H 0.14 1.59 8.04 -52.48 -0.42 1.16 16 33 H 0.15 1.63 7.32 -52.48 -0.38 1.25 16 34 H 0.42 2.74 8.92 -34.47 -0.31 2.43 16 35 H 0.42 2.60 8.96 -34.47 -0.31 2.29 16 36 H 0.15 2.79 7.71 -52.49 -0.40 2.38 16 LS Contribution 333.84 15.07 5.03 5.03 Total: -1.00 -32.82 333.84 -8.17 -40.99 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -2.81 Total: 6.50 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: -4.31 Total: -31.55 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 1.35 Total: -33.45 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -1.96 Total: -37.31 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.86 Total: 16.77 kcal Atomic # 16 Polarization: 35.71 SS G_CDS: -0.64 Total: 35.07 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.82 -8.17 -40.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585123.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.645 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds