Wall clock time and date at job start Tue Mar 31 2020 20:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86799 * 119.99676 * 2 1 4 4 H 1.48493 * 109.47435 * 269.99904 * 3 2 1 5 5 H 1.48494 * 109.47439 * 30.00255 * 3 2 1 6 6 H 1.48503 * 109.46800 * 149.99974 * 3 2 1 7 7 C 1.38647 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00179 * 0.02562 * 7 2 1 9 9 O 1.34812 * 119.99663 * 179.97438 * 7 2 1 10 10 C 1.35667 * 116.99957 * 185.05357 * 9 7 2 11 11 C 1.38758 * 120.13180 * 354.40689 * 10 9 7 12 12 C 1.38110 * 120.04849 * 179.97438 * 11 10 9 13 13 C 1.38447 * 120.32372 * 359.97438 * 12 11 10 14 14 C 1.38009 * 120.27015 * 0.02562 * 13 12 11 15 15 C 1.39286 * 119.94640 * 359.97438 * 14 13 12 16 16 C 1.48287 * 120.16283 * 180.02562 * 15 14 13 17 17 C 1.39419 * 120.11692 * 310.00692 * 16 15 14 18 18 C 1.37984 * 119.92648 * 179.97438 * 17 16 15 19 19 C 1.38321 * 120.15496 * 359.97438 * 18 17 16 20 20 S 1.76195 * 119.88838 * 180.02562 * 19 18 17 21 21 N 1.65592 * 107.21736 * 115.00075 * 20 19 18 22 22 O 1.42097 * 106.40341 * 228.54395 * 20 19 18 23 23 O 1.42110 * 106.40355 * 1.46279 * 20 19 18 24 24 C 1.38532 * 120.22638 * 0.02562 * 19 18 17 25 25 F 1.35100 * 119.96117 * 180.02562 * 24 19 18 26 26 C 1.38260 * 120.07485 * 359.74212 * 24 19 18 27 27 H 0.97001 * 119.99399 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.97869 * 359.97015 * 11 10 9 29 29 H 1.08000 * 119.84187 * 180.27075 * 12 11 10 30 30 H 1.07995 * 119.86480 * 180.02562 * 13 12 11 31 31 H 1.08006 * 120.02671 * 180.02562 * 14 13 12 32 32 H 1.08004 * 120.03422 * 359.95193 * 17 16 15 33 33 H 1.08004 * 119.92593 * 180.02562 * 18 17 16 34 34 H 0.97001 * 120.00793 * 0.02562 * 21 20 19 35 35 H 0.97007 * 120.00379 * 180.02562 * 21 20 19 36 36 H 1.07995 * 120.07529 * 180.27811 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4471 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3570 -1.2007 0.0000 10 6 3.9729 -2.4048 -0.1059 11 6 3.2250 -3.5735 -0.0907 12 6 3.8537 -4.7984 -0.1992 13 6 5.2308 -4.8686 -0.3240 14 6 5.9876 -3.7146 -0.3406 15 6 5.3652 -2.4733 -0.2320 16 6 6.1736 -1.2304 -0.2498 17 6 7.2826 -1.1051 0.5857 18 6 8.0324 0.0531 0.5656 19 6 7.6867 1.0900 -0.2821 20 16 8.6495 2.5655 -0.3026 21 7 9.3487 2.6737 -1.7998 22 8 7.7307 3.6455 -0.2098 23 8 9.7099 2.3656 0.6220 24 6 6.5860 0.9723 -1.1150 25 9 6.2534 1.9882 -1.9412 26 6 5.8309 -0.1858 -1.1060 27 1 -0.4849 0.8401 -0.0004 28 1 2.1504 -3.5253 0.0060 29 1 3.2680 -5.7057 -0.1914 30 1 5.7147 -5.8303 -0.4087 31 1 7.0616 -3.7740 -0.4385 32 1 7.5543 -1.9136 1.2483 33 1 8.8918 0.1499 1.2125 34 1 9.1826 1.9862 -2.4636 35 1 9.9245 3.4247 -2.0131 36 1 4.9754 -0.2792 -1.7585 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243585123.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:19 Heat of formation + Delta-G solvation = -114.743840 kcal Electronic energy + Delta-G solvation = -26611.489797 eV Core-core repulsion = 22488.082544 eV Total energy + Delta-G solvation = -4123.407253 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.43326 -41.31686 -39.86045 -38.31271 -38.20649 -37.05036 -34.57795 -34.17709 -33.89704 -31.94712 -30.93326 -30.21441 -27.34785 -25.20830 -24.27781 -22.94637 -22.42734 -20.75979 -19.89892 -19.71247 -19.20797 -18.54626 -18.21589 -17.83675 -17.08596 -17.01395 -16.79847 -16.49194 -16.43959 -15.87612 -15.80655 -15.44821 -15.31720 -15.01337 -14.60732 -14.37892 -14.15525 -13.82138 -13.68398 -13.31254 -13.30861 -13.23140 -13.18545 -12.88785 -12.67648 -12.59884 -12.39793 -12.20850 -11.95396 -11.44302 -11.35751 -11.00767 -10.80459 -10.07845 -9.63735 -9.08789 -8.60197 -6.29376 -0.83597 -0.63665 -0.03846 0.48234 0.64426 1.20063 1.22932 1.37732 1.95072 2.13815 2.15466 2.50672 2.69588 2.75343 2.95414 3.05169 3.27947 3.48794 3.74441 4.02589 4.07382 4.14211 4.24070 4.41258 4.45048 4.57342 4.61278 4.75159 4.83569 4.90412 5.15542 5.16696 5.18831 5.37521 5.49065 5.60929 5.66372 5.73254 5.83841 6.16686 6.26076 6.76104 7.49968 8.51260 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.011613 B = 0.004981 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.535289 B = 5620.354387 C = 7542.492033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.028 3.972 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.233 6.233 10 C 0.140 3.860 11 C -0.242 4.242 12 C -0.061 4.061 13 C -0.180 4.180 14 C -0.043 4.043 15 C -0.157 4.157 16 C 0.065 3.935 17 C -0.134 4.134 18 C 0.013 3.987 19 C -0.724 4.724 20 S 2.729 3.271 21 N -1.230 6.230 22 O -0.998 6.998 23 O -0.973 6.973 24 C 0.173 3.827 25 F -0.131 7.131 26 C -0.174 4.174 27 H 0.285 0.715 28 H 0.112 0.888 29 H 0.144 0.856 30 H 0.160 0.840 31 H 0.164 0.836 32 H 0.177 0.823 33 H 0.187 0.813 34 H 0.428 0.572 35 H 0.433 0.567 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.215 -4.396 -3.284 21.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.172 4.172 3 Si 0.757 3.243 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.468 4.468 8 H 0.108 0.892 9 O -0.140 6.140 10 C 0.090 3.910 11 C -0.261 4.261 12 C -0.079 4.079 13 C -0.198 4.198 14 C -0.061 4.061 15 C -0.158 4.158 16 C 0.064 3.936 17 C -0.153 4.153 18 C -0.006 4.006 19 C -0.811 4.811 20 S 2.816 3.184 21 N -0.911 5.911 22 O -0.987 6.987 23 O -0.963 6.963 24 C 0.152 3.848 25 F -0.110 7.110 26 C -0.193 4.193 27 H 0.095 0.905 28 H 0.130 0.870 29 H 0.161 0.839 30 H 0.178 0.822 31 H 0.182 0.818 32 H 0.195 0.805 33 H 0.204 0.796 34 H 0.258 0.742 35 H 0.267 0.733 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 21.087 -3.400 -2.417 21.496 hybrid contribution -1.382 0.495 -0.952 1.750 sum 19.705 -2.904 -3.369 20.201 Atomic orbital electron populations 1.69687 1.06426 1.29383 1.49912 1.24935 0.95530 1.00857 0.95872 0.85753 0.79378 0.79517 0.79608 1.19111 1.19195 1.19084 1.20702 0.78026 0.96039 1.52019 0.89175 1.83550 1.21195 1.27234 1.81991 1.19613 0.92002 0.85435 0.93999 1.21305 1.00464 0.93114 1.11190 1.21342 0.95870 0.96252 0.94425 1.21224 0.93033 0.99351 1.06215 1.21259 1.00980 0.89049 0.94787 1.18134 0.88697 0.93852 1.15099 1.18957 0.92332 0.91480 0.90801 1.21787 0.94277 0.99813 0.99423 1.21194 0.97916 0.89303 0.92198 1.30541 1.13778 1.24494 1.12327 1.00590 0.72816 0.71919 0.73116 1.52558 1.67273 1.38335 1.32962 1.93601 1.65678 1.53204 1.86256 1.93566 1.54924 1.85632 1.62132 1.17092 0.93872 0.84724 0.89074 1.91573 1.92005 1.57751 1.69623 1.21380 1.01028 0.93680 1.03232 0.90534 0.87043 0.83858 0.82200 0.81818 0.80545 0.79630 0.74170 0.73327 0.85795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.12 13.96 21.61 0.30 -53.81 16 2 C 0.03 1.61 5.49 84.83 0.47 2.08 16 3 Si 0.93 47.07 28.62 68.60 1.96 49.03 16 4 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -13.71 7.11 99.48 0.71 -13.00 16 7 C -0.39 -22.22 9.95 67.92 0.68 -21.55 16 8 H 0.09 5.28 5.44 -2.91 -0.02 5.27 16 9 O -0.23 -11.98 6.96 -21.65 -0.15 -12.13 16 10 C 0.14 5.98 6.56 22.81 0.15 6.13 16 11 C -0.24 -9.55 9.16 22.36 0.20 -9.34 16 12 C -0.06 -1.76 10.03 22.29 0.22 -1.54 16 13 C -0.18 -4.16 10.03 22.27 0.22 -3.94 16 14 C -0.04 -1.05 9.51 22.47 0.21 -0.84 16 15 C -0.16 -5.27 5.49 -19.93 -0.11 -5.38 16 16 C 0.06 2.08 5.27 -20.05 -0.11 1.97 16 17 C -0.13 -3.23 9.51 22.49 0.21 -3.01 16 18 C 0.01 0.29 9.53 22.23 0.21 0.50 16 19 C -0.72 -19.66 5.89 22.36 0.13 -19.53 16 20 S 2.73 66.54 5.92 -56.49 -0.33 66.21 16 21 N -1.23 -18.01 9.55 37.02 0.35 -17.66 16 22 O -1.00 -33.70 17.42 -128.00 -2.23 -35.93 16 23 O -0.97 -25.31 16.96 -128.00 -2.17 -27.48 16 24 C 0.17 5.74 7.20 22.35 0.16 5.90 16 25 F -0.13 -4.52 16.26 44.97 0.73 -3.78 16 26 C -0.17 -6.29 8.77 22.54 0.20 -6.09 16 27 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 28 H 0.11 4.93 5.64 -2.91 -0.02 4.91 16 29 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 30 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 31 H 0.16 2.60 8.04 -2.91 -0.02 2.57 16 32 H 0.18 2.92 8.04 -2.91 -0.02 2.90 16 33 H 0.19 3.02 7.32 -2.91 -0.02 3.00 16 34 H 0.43 4.53 8.92 -96.74 -0.86 3.67 16 35 H 0.43 4.22 8.96 -96.74 -0.87 3.35 16 36 H 0.12 5.00 7.71 -2.91 -0.02 4.97 16 Total: -1.00 -77.31 333.84 0.77 -76.54 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -0.55 Total: 13.65 kcal Atomic # 6 Polarization: -57.49 SS G_CDS: 2.86 Total: -54.63 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: 0.66 Total: -71.47 kcal Atomic # 8 Polarization: -71.00 SS G_CDS: -4.55 Total: -75.55 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.73 Total: -3.78 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.96 Total: 49.03 kcal Atomic # 16 Polarization: 66.54 SS G_CDS: -0.33 Total: 66.21 kcal Total: -77.31 0.77 -76.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585123.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.202 kcal (2) G-P(sol) polarization free energy of solvation -77.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds