Wall clock time and date at job start Tue Mar 31 2020 20:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86803 * 119.99766 * 2 1 4 4 H 1.48504 * 109.46946 * 239.99733 * 3 2 1 5 5 H 1.48502 * 109.47314 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47171 * 119.99970 * 3 2 1 7 7 C 1.38661 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99613 * 180.02562 * 7 2 1 9 9 O 1.34813 * 119.99848 * 0.02562 * 7 2 1 10 10 C 1.35640 * 116.99611 * 185.06076 * 9 7 2 11 11 C 1.38775 * 120.14190 * 354.40371 * 10 9 7 12 12 C 1.38088 * 120.05244 * 180.02562 * 11 10 9 13 13 C 1.38459 * 120.33591 * 0.02562 * 12 11 10 14 14 C 1.37989 * 120.27389 * 359.66874 * 13 12 11 15 15 C 1.39329 * 119.94422 * 0.60722 * 14 13 12 16 16 C 1.48206 * 120.16505 * 179.69662 * 15 14 13 17 17 C 1.39419 * 119.73755 * 359.97438 * 16 15 14 18 18 C 1.38357 * 119.06511 * 180.22384 * 17 16 15 19 19 C 1.38817 * 118.51994 * 359.51795 * 18 17 16 20 20 C 1.50698 * 120.30952 * 180.27054 * 19 18 17 21 21 S 1.81400 * 109.47209 * 89.99507 * 20 19 18 22 22 O 1.42096 * 110.54463 * 299.99971 * 21 20 19 23 23 O 1.42103 * 110.54379 * 76.75065 * 21 20 19 24 24 F 1.61000 * 104.45009 * 188.37328 * 21 20 19 25 25 C 1.38241 * 119.37682 * 0.24105 * 19 18 17 26 26 N 1.31770 * 120.90342 * 0.02562 * 25 19 18 27 27 H 0.97004 * 119.99851 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.97404 * 359.97438 * 11 10 9 29 29 H 1.08008 * 119.83346 * 179.97438 * 12 11 10 30 30 H 1.08001 * 119.86374 * 179.97438 * 13 12 11 31 31 H 1.08009 * 120.03054 * 180.32689 * 14 13 12 32 32 H 1.07994 * 120.46232 * 0.02562 * 17 16 15 33 33 H 1.08002 * 120.74358 * 179.78065 * 18 17 16 34 34 H 1.09002 * 109.46744 * 209.99205 * 20 19 18 35 35 H 1.08994 * 109.47233 * 329.99555 * 20 19 18 36 36 H 1.08006 * 119.54429 * 180.02562 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1032 1.6965 1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3348 -2.3683 0.0005 10 6 2.0694 -3.5035 0.1077 11 6 3.4557 -3.4403 0.0942 12 6 4.2018 -4.5971 0.2029 13 6 3.5741 -5.8252 0.3252 14 6 2.1966 -5.9033 0.3465 15 6 1.4324 -4.7440 0.2318 16 6 -0.0475 -4.8229 0.2473 17 6 -0.6726 -6.0624 0.3765 18 6 -2.0549 -6.1204 0.3846 19 6 -2.7687 -4.9351 0.2733 20 6 -4.2756 -4.9509 0.2838 21 16 -4.8701 -4.7914 1.9902 22 8 -4.3922 -5.8664 2.7872 23 8 -4.7598 -3.4457 2.4330 24 9 -6.4564 -5.0472 1.8885 25 6 -2.0843 -3.7400 0.1534 26 7 -0.7669 -3.7127 0.1430 27 1 -0.4850 0.8401 -0.0004 28 1 3.9514 -2.4856 -0.0021 29 1 5.2805 -4.5438 0.1916 30 1 4.1651 -6.7252 0.4093 31 1 1.7111 -6.8629 0.4473 32 1 -0.0860 -6.9647 0.4658 33 1 -2.5672 -7.0664 0.4798 34 1 -4.6518 -4.1187 -0.3112 35 1 -4.6320 -5.8902 -0.1388 36 1 -2.6370 -2.8161 0.0670 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243585686.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:54 Heat of formation + Delta-G solvation = -107.914193 kcal Electronic energy + Delta-G solvation = -26013.578081 eV Core-core repulsion = 21890.466983 eV Total energy + Delta-G solvation = -4123.111097 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.08570 -41.42852 -40.29903 -38.63958 -38.01827 -37.48733 -35.14628 -34.20963 -33.34393 -31.55733 -30.54910 -28.22252 -27.26040 -24.77989 -24.33457 -22.69881 -22.13915 -21.30685 -19.74165 -18.98793 -18.95627 -18.30843 -17.97763 -17.56154 -17.22931 -16.43933 -16.26555 -15.88684 -15.64317 -15.61421 -15.45052 -15.27263 -14.97367 -14.69888 -14.45405 -14.16422 -13.94476 -13.90736 -13.82376 -13.57462 -13.48939 -13.47919 -13.11589 -12.89885 -12.61267 -12.43272 -12.39180 -12.21445 -12.05696 -11.19029 -10.76911 -10.71822 -10.52354 -10.00218 -9.33877 -8.71183 -8.36636 -6.01624 -1.48960 -0.25174 0.44399 0.78537 0.93926 1.35094 1.45845 1.49786 1.64731 2.19671 2.24940 2.74490 2.81626 3.03360 3.17563 3.36079 3.51825 3.58182 3.66502 3.82611 3.97875 4.23035 4.24688 4.32610 4.38355 4.54733 4.71918 4.73641 4.86072 5.00779 5.08229 5.15110 5.20286 5.28279 5.62660 5.70625 5.78440 5.82758 6.06675 6.25901 7.04256 7.30187 7.91034 8.81902 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.011123 B = 0.003937 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.807812 B = 7110.423849 C = 9265.627548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C -0.012 4.012 3 Si 1.009 2.991 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.263 1.263 7 C -0.426 4.426 8 H 0.095 0.905 9 O -0.165 6.165 10 C 0.136 3.864 11 C -0.263 4.263 12 C -0.055 4.055 13 C -0.202 4.202 14 C -0.043 4.043 15 C -0.169 4.169 16 C 0.173 3.827 17 C -0.176 4.176 18 C -0.047 4.047 19 C -0.182 4.182 20 C -0.533 4.533 21 S 2.578 3.422 22 O -0.955 6.955 23 O -0.972 6.972 24 F -0.474 7.474 25 C 0.106 3.894 26 N -0.486 5.486 27 H 0.268 0.732 28 H 0.117 0.883 29 H 0.145 0.855 30 H 0.158 0.842 31 H 0.162 0.838 32 H 0.174 0.826 33 H 0.190 0.810 34 H 0.181 0.819 35 H 0.205 0.795 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.357 -15.485 -1.483 16.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.212 4.212 3 Si 0.829 3.171 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.187 1.187 7 C -0.502 4.502 8 H 0.112 0.888 9 O -0.067 6.067 10 C 0.081 3.919 11 C -0.283 4.283 12 C -0.073 4.073 13 C -0.221 4.221 14 C -0.062 4.062 15 C -0.172 4.172 16 C 0.038 3.962 17 C -0.195 4.195 18 C -0.073 4.073 19 C -0.186 4.186 20 C -0.664 4.664 21 S 2.676 3.324 22 O -0.953 6.953 23 O -0.970 6.970 24 F -0.474 7.474 25 C -0.055 4.055 26 N -0.194 5.194 27 H 0.077 0.923 28 H 0.134 0.866 29 H 0.163 0.837 30 H 0.175 0.825 31 H 0.179 0.821 32 H 0.191 0.809 33 H 0.207 0.793 34 H 0.199 0.801 35 H 0.222 0.778 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.687 -14.387 -0.836 15.887 hybrid contribution 0.151 0.838 -0.477 0.976 sum -6.536 -13.549 -1.313 15.100 Atomic orbital electron populations 1.70253 1.07551 1.28120 1.46454 1.26406 0.96749 1.02129 0.95959 0.84791 0.77521 0.75155 0.79587 1.18393 1.19764 1.18720 1.21842 0.92335 0.82445 1.53623 0.88807 1.84250 1.33821 1.11240 1.77366 1.20096 0.91291 0.88265 0.92233 1.21294 0.93073 1.00452 1.13457 1.21317 1.00356 0.91607 0.94065 1.21107 0.94080 0.98146 1.08742 1.21255 0.94056 0.96173 0.94708 1.18214 0.90630 0.92105 1.16233 1.20314 0.93353 0.89573 0.92995 1.22395 0.95953 0.98273 1.02914 1.21951 0.93539 0.98982 0.92865 1.20027 0.93639 0.95110 1.09863 1.29209 0.99374 1.17939 1.19875 1.07514 0.70373 0.74317 0.80224 1.93692 1.78591 1.56196 1.66866 1.93734 1.84606 1.38076 1.80609 1.93621 1.61271 1.95935 1.96524 1.23069 0.90199 0.98141 0.94094 1.68131 1.08036 1.31570 1.11627 0.92279 0.86554 0.83717 0.82459 0.82112 0.80877 0.79306 0.80094 0.77808 0.83400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.21 13.67 21.62 0.30 -53.92 16 2 C -0.01 -0.68 5.49 84.84 0.47 -0.21 16 3 Si 1.01 43.63 29.55 68.60 2.03 45.66 16 4 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.43 -25.02 9.49 67.92 0.64 -24.37 16 8 H 0.09 5.11 5.21 -2.91 -0.02 5.09 16 9 O -0.17 -9.87 7.59 -21.35 -0.16 -10.03 16 10 C 0.14 6.85 6.65 22.83 0.15 7.01 16 11 C -0.26 -11.50 9.16 22.36 0.20 -11.29 16 12 C -0.06 -1.82 10.03 22.29 0.22 -1.59 16 13 C -0.20 -5.74 10.03 22.26 0.22 -5.51 16 14 C -0.04 -1.34 9.41 22.47 0.21 -1.13 16 15 C -0.17 -7.16 5.89 -19.94 -0.12 -7.28 16 16 C 0.17 7.07 6.73 41.95 0.28 7.35 16 17 C -0.18 -4.95 9.46 22.58 0.21 -4.74 16 18 C -0.05 -1.07 9.84 22.44 0.22 -0.85 16 19 C -0.18 -4.68 5.16 -19.73 -0.10 -4.78 16 20 C -0.53 -7.31 6.41 71.24 0.46 -6.85 16 21 S 2.58 52.82 6.42 -56.49 -0.36 52.46 16 22 O -0.95 -24.60 18.16 -127.65 -2.32 -26.92 16 23 O -0.97 -30.13 18.16 -127.65 -2.32 -32.45 16 24 F -0.47 -8.14 17.85 44.97 0.80 -7.33 16 25 C 0.11 4.03 10.85 84.70 0.92 4.95 16 26 N -0.49 -23.09 8.15 -184.88 -1.51 -24.60 16 27 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 28 H 0.12 5.21 5.64 -2.91 -0.02 5.20 16 29 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 30 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 31 H 0.16 3.44 6.18 -2.91 -0.02 3.42 16 32 H 0.17 3.39 6.19 -2.91 -0.02 3.37 16 33 H 0.19 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.18 1.69 8.09 -2.39 -0.02 1.67 16 35 H 0.20 0.62 8.09 -2.39 -0.02 0.61 16 36 H 0.15 5.61 8.06 -2.91 -0.02 5.59 16 Total: -1.00 -90.45 335.44 1.60 -88.85 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 1.15 Total: 17.60 kcal Atomic # 6 Polarization: -53.31 SS G_CDS: 4.00 Total: -49.31 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -1.21 Total: -78.52 kcal Atomic # 8 Polarization: -64.60 SS G_CDS: -4.80 Total: -69.40 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 0.80 Total: -7.33 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 52.82 SS G_CDS: -0.36 Total: 52.46 kcal Total: -90.45 1.60 -88.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585686.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.068 kcal (2) G-P(sol) polarization free energy of solvation -90.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds