Wall clock time and date at job start Tue Mar 31 2020 20:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86801 * 120.00143 * 2 1 4 4 H 1.48496 * 109.47587 * 270.00489 * 3 2 1 5 5 H 1.48507 * 109.47041 * 30.00238 * 3 2 1 6 6 H 1.48495 * 109.47449 * 149.99933 * 3 2 1 7 7 C 1.38652 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99759 * 0.02562 * 7 2 1 9 9 O 1.34813 * 120.00109 * 179.97438 * 7 2 1 10 10 C 1.35665 * 117.00140 * 174.65578 * 9 7 2 11 11 C 1.38763 * 120.13144 * 353.89987 * 10 9 7 12 12 C 1.38107 * 120.04366 * 180.27253 * 11 10 9 13 13 C 1.38439 * 120.33086 * 0.02562 * 12 11 10 14 14 C 1.38021 * 120.26783 * 359.97438 * 13 12 11 15 15 C 1.39286 * 119.94258 * 0.02562 * 14 13 12 16 16 C 1.48295 * 120.15633 * 179.97438 * 15 14 13 17 17 C 1.39414 * 120.11341 * 290.72555 * 16 15 14 18 18 C 1.38000 * 119.91925 * 179.81185 * 17 16 15 19 19 C 1.38316 * 120.15223 * 0.44025 * 18 17 16 20 20 C 1.38529 * 120.22935 * 359.79485 * 19 18 17 21 21 F 1.35103 * 119.96154 * 179.97438 * 20 19 18 22 22 C 1.38247 * 120.07581 * 359.97438 * 20 19 18 23 23 S 1.76203 * 120.07699 * 180.02562 * 22 20 19 24 24 N 1.65599 * 107.21886 * 274.05383 * 23 22 20 25 25 O 1.42099 * 106.40311 * 27.59170 * 23 22 20 26 26 O 1.42104 * 106.40385 * 160.51037 * 23 22 20 27 27 H 0.96994 * 120.00202 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.97698 * 0.27545 * 11 10 9 29 29 H 1.08004 * 119.83656 * 180.02562 * 12 11 10 30 30 H 1.07997 * 119.86867 * 180.02562 * 13 12 11 31 31 H 1.08003 * 120.02344 * 179.97438 * 14 13 12 32 32 H 1.07994 * 120.04098 * 0.02562 * 17 16 15 33 33 H 1.08001 * 119.92025 * 180.21333 * 18 17 16 34 34 H 1.08003 * 119.88066 * 179.76322 * 19 18 17 35 35 H 0.97000 * 120.00073 * 359.97438 * 24 23 22 36 36 H 0.96999 * 120.00013 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 1.4688 -2.1360 -0.0014 9 8 3.3569 -1.2007 -0.0011 10 6 3.9729 -2.4042 0.1110 11 6 3.2260 -3.5498 0.3463 12 6 3.8555 -4.7732 0.4657 13 6 5.2322 -4.8651 0.3523 14 6 5.9880 -3.7342 0.1184 15 6 5.3648 -2.4946 -0.0040 16 6 6.1724 -1.2763 -0.2548 17 6 7.0114 -0.7762 0.7400 18 6 7.7640 0.3555 0.5009 19 6 7.6810 0.9999 -0.7202 20 6 6.8456 0.5112 -1.7113 21 9 6.7683 1.1453 -2.9018 22 6 6.0910 -0.6245 -1.4837 23 16 5.0290 -1.2466 -2.7446 24 7 3.5871 -0.4432 -2.6115 25 8 5.5989 -0.8457 -3.9831 26 8 4.7647 -2.6030 -2.4136 27 1 -0.4850 0.8400 0.0004 28 1 2.1518 -3.4846 0.4361 29 1 3.2709 -5.6628 0.6484 30 1 5.7167 -5.8257 0.4465 31 1 7.0618 -3.8104 0.0310 32 1 7.0749 -1.2758 1.6953 33 1 8.4166 0.7410 1.2703 34 1 8.2691 1.8875 -0.9012 35 1 3.4681 0.2286 -1.9220 36 1 2.8613 -0.6449 -3.2226 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587477.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:35 Heat of formation + Delta-G solvation = -74.404603 kcal Electronic energy + Delta-G solvation = -28426.472205 eV Core-core repulsion = 24304.814192 eV Total energy + Delta-G solvation = -4121.658012 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.02751 -39.83358 -38.46358 -36.67345 -36.44334 -35.29358 -32.69800 -32.53221 -32.28785 -30.85468 -29.37936 -28.56539 -25.39290 -23.74174 -23.12759 -21.42660 -20.96204 -19.20121 -18.11133 -17.98436 -17.61623 -16.88541 -16.78082 -16.54922 -15.66458 -15.60385 -15.13867 -14.88526 -14.81662 -14.57977 -14.15846 -13.95184 -13.80127 -13.37405 -13.08414 -12.59377 -12.41760 -12.34906 -12.26544 -11.88966 -11.76290 -11.62589 -11.43037 -11.18648 -10.97650 -10.92440 -10.81996 -10.53223 -10.30705 -9.73914 -9.55401 -9.45349 -8.99582 -8.78922 -8.10605 -7.37926 -6.53384 -4.18907 0.60372 0.95429 1.08602 2.00320 2.28411 2.98351 3.06264 3.18140 3.29683 3.62012 4.03072 4.04277 4.09720 4.39464 4.51517 4.67671 4.81542 4.84894 4.97364 5.14371 5.45476 5.53083 5.56111 5.70351 5.78224 5.92812 6.00984 6.10470 6.15736 6.28366 6.49043 6.66077 6.69214 6.73503 6.99888 7.11106 7.26060 7.53161 7.65593 7.72395 7.93693 8.81020 9.39749 10.54959 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.009745 B = 0.008309 C = 0.006308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.682080 B = 3368.978880 C = 4437.788820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.070 3.930 3 Si 0.863 3.137 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.253 1.253 7 C -0.377 4.377 8 H 0.111 0.889 9 O -0.225 6.225 10 C 0.191 3.809 11 C -0.205 4.205 12 C -0.063 4.063 13 C -0.196 4.196 14 C -0.042 4.042 15 C -0.152 4.152 16 C 0.130 3.870 17 C -0.145 4.145 18 C -0.036 4.036 19 C -0.188 4.188 20 C 0.193 3.807 21 F -0.117 7.117 22 C -0.708 4.708 23 S 2.696 3.304 24 N -1.230 6.230 25 O -0.974 6.974 26 O -0.935 6.935 27 H 0.280 0.720 28 H 0.136 0.864 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.413 0.587 36 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.203 -0.370 1.253 12.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.133 4.133 3 Si 0.688 3.312 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.177 1.177 7 C -0.453 4.453 8 H 0.128 0.872 9 O -0.131 6.131 10 C 0.139 3.861 11 C -0.224 4.224 12 C -0.081 4.081 13 C -0.215 4.215 14 C -0.060 4.060 15 C -0.154 4.154 16 C 0.129 3.871 17 C -0.164 4.164 18 C -0.054 4.054 19 C -0.208 4.208 20 C 0.173 3.827 21 F -0.095 7.095 22 C -0.794 4.794 23 S 2.783 3.217 24 N -0.909 5.909 25 O -0.963 6.963 26 O -0.924 6.924 27 H 0.091 0.909 28 H 0.154 0.846 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.243 0.757 36 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 12.469 -0.704 0.550 12.501 hybrid contribution -0.118 1.584 0.450 1.651 sum 12.352 0.880 0.999 12.423 Atomic orbital electron populations 1.69596 1.05253 1.28322 1.48003 1.24327 0.94847 0.97817 0.96332 0.86876 0.81428 0.83328 0.79593 1.18963 1.20126 1.17723 1.20688 0.76372 0.96618 1.51630 0.87213 1.83468 1.23181 1.25789 1.80630 1.18800 0.89704 0.85853 0.91727 1.21129 1.00952 0.92034 1.08329 1.20873 0.94347 0.96601 0.96296 1.20529 0.94037 0.97379 1.09544 1.20462 0.98307 0.90610 0.96627 1.17621 0.90066 0.92090 1.15597 1.18190 0.89450 0.90492 0.88994 1.21488 0.97909 0.97390 0.99609 1.21216 0.95480 0.93220 0.95500 1.21181 1.02412 1.03146 0.94021 1.17042 0.94785 0.89439 0.81475 1.91637 1.94577 1.80321 1.42935 1.30814 1.21735 1.09056 1.17802 1.01691 0.73173 0.74099 0.72763 1.52833 1.31845 1.58587 1.47588 1.93589 1.78082 1.83368 1.41261 1.93695 1.83526 1.32226 1.82964 0.90939 0.84629 0.87092 0.87129 0.86819 0.84166 0.84245 0.84040 0.75689 0.75006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.35 13.96 55.48 0.77 -22.58 16 2 C 0.07 1.79 5.49 -17.52 -0.10 1.69 16 3 Si 0.86 19.31 26.12 -169.99 -4.44 14.87 16 4 H -0.26 -5.57 6.80 56.52 0.38 -5.18 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.25 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.38 -9.51 9.45 30.89 0.29 -9.22 16 8 H 0.11 2.89 5.54 -52.49 -0.29 2.60 16 9 O -0.23 -5.25 5.69 0.36 0.00 -5.25 16 10 C 0.19 4.15 4.81 -38.74 -0.19 3.97 16 11 C -0.21 -4.26 9.13 -39.44 -0.36 -4.62 16 12 C -0.06 -1.11 10.03 -39.56 -0.40 -1.51 16 13 C -0.20 -3.25 10.03 -39.59 -0.40 -3.64 16 14 C -0.04 -0.72 9.63 -39.27 -0.38 -1.09 16 15 C -0.15 -2.94 3.12 -104.73 -0.33 -3.26 16 16 C 0.13 2.33 4.87 -104.91 -0.51 1.82 16 17 C -0.15 -2.08 9.77 -39.23 -0.38 -2.46 16 18 C -0.04 -0.43 10.03 -39.64 -0.40 -0.83 16 19 C -0.19 -2.51 10.02 -39.45 -0.40 -2.90 16 20 C 0.19 3.28 7.19 -39.47 -0.28 2.99 16 21 F -0.12 -2.06 15.47 2.25 0.03 -2.03 16 22 C -0.71 -13.20 5.87 -39.17 -0.23 -13.43 16 23 S 2.70 53.82 5.49 -107.50 -0.59 53.23 16 24 N -1.23 -24.16 8.14 60.35 0.49 -23.66 16 25 O -0.97 -20.64 16.37 -57.17 -0.94 -21.58 16 26 O -0.94 -20.08 13.89 -57.17 -0.79 -20.87 16 27 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.14 2.89 5.72 -52.49 -0.30 2.59 16 29 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 30 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 32 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.14 1.43 8.06 -52.48 -0.42 1.00 16 35 H 0.41 8.49 4.57 -34.47 -0.16 8.33 16 36 H 0.42 7.32 8.96 -34.47 -0.31 7.01 16 LS Contribution 317.04 15.07 4.78 4.78 Total: -1.00 -30.64 317.04 -7.48 -38.12 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -2.75 Total: 17.48 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: -4.05 Total: -32.51 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 1.27 Total: -46.24 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -1.73 Total: -47.70 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.03 Total: -2.03 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.44 Total: 14.87 kcal Atomic # 16 Polarization: 53.82 SS G_CDS: -0.59 Total: 53.23 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.64 -7.48 -38.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587477.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.284 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds