Wall clock time and date at job start Tue Mar 31 2020 20:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86801 * 120.00143 * 2 1 4 4 H 1.48496 * 109.47587 * 270.00489 * 3 2 1 5 5 H 1.48507 * 109.47041 * 30.00238 * 3 2 1 6 6 H 1.48495 * 109.47449 * 149.99933 * 3 2 1 7 7 C 1.38652 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99759 * 0.02562 * 7 2 1 9 9 O 1.34813 * 120.00109 * 179.97438 * 7 2 1 10 10 C 1.35665 * 117.00140 * 174.65578 * 9 7 2 11 11 C 1.38763 * 120.13144 * 353.89987 * 10 9 7 12 12 C 1.38107 * 120.04366 * 180.27253 * 11 10 9 13 13 C 1.38439 * 120.33086 * 0.02562 * 12 11 10 14 14 C 1.38021 * 120.26783 * 359.97438 * 13 12 11 15 15 C 1.39286 * 119.94258 * 0.02562 * 14 13 12 16 16 C 1.48295 * 120.15633 * 179.97438 * 15 14 13 17 17 C 1.39414 * 120.11341 * 290.72555 * 16 15 14 18 18 C 1.38000 * 119.91925 * 179.81185 * 17 16 15 19 19 C 1.38316 * 120.15223 * 0.44025 * 18 17 16 20 20 C 1.38529 * 120.22935 * 359.79485 * 19 18 17 21 21 F 1.35103 * 119.96154 * 179.97438 * 20 19 18 22 22 C 1.38247 * 120.07581 * 359.97438 * 20 19 18 23 23 S 1.76203 * 120.07699 * 180.02562 * 22 20 19 24 24 N 1.65599 * 107.21886 * 274.05383 * 23 22 20 25 25 O 1.42099 * 106.40311 * 27.59170 * 23 22 20 26 26 O 1.42104 * 106.40385 * 160.51037 * 23 22 20 27 27 H 0.96994 * 120.00202 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.97698 * 0.27545 * 11 10 9 29 29 H 1.08004 * 119.83656 * 180.02562 * 12 11 10 30 30 H 1.07997 * 119.86867 * 180.02562 * 13 12 11 31 31 H 1.08003 * 120.02344 * 179.97438 * 14 13 12 32 32 H 1.07994 * 120.04098 * 0.02562 * 17 16 15 33 33 H 1.08001 * 119.92025 * 180.21333 * 18 17 16 34 34 H 1.08003 * 119.88066 * 179.76322 * 19 18 17 35 35 H 0.97000 * 120.00073 * 359.97438 * 24 23 22 36 36 H 0.96999 * 120.00013 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 1.4688 -2.1360 -0.0014 9 8 3.3569 -1.2007 -0.0011 10 6 3.9729 -2.4042 0.1110 11 6 3.2260 -3.5498 0.3463 12 6 3.8555 -4.7732 0.4657 13 6 5.2322 -4.8651 0.3523 14 6 5.9880 -3.7342 0.1184 15 6 5.3648 -2.4946 -0.0040 16 6 6.1724 -1.2763 -0.2548 17 6 7.0114 -0.7762 0.7400 18 6 7.7640 0.3555 0.5009 19 6 7.6810 0.9999 -0.7202 20 6 6.8456 0.5112 -1.7113 21 9 6.7683 1.1453 -2.9018 22 6 6.0910 -0.6245 -1.4837 23 16 5.0290 -1.2466 -2.7446 24 7 3.5871 -0.4432 -2.6115 25 8 5.5989 -0.8457 -3.9831 26 8 4.7647 -2.6030 -2.4136 27 1 -0.4850 0.8400 0.0004 28 1 2.1518 -3.4846 0.4361 29 1 3.2709 -5.6628 0.6484 30 1 5.7167 -5.8257 0.4465 31 1 7.0618 -3.8104 0.0310 32 1 7.0749 -1.2758 1.6953 33 1 8.4166 0.7410 1.2703 34 1 8.2691 1.8875 -0.9012 35 1 3.4681 0.2286 -1.9220 36 1 2.8613 -0.6449 -3.2226 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243587477.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:34 Heat of formation + Delta-G solvation = -96.092646 kcal Electronic energy + Delta-G solvation = -28427.412669 eV Core-core repulsion = 24304.814192 eV Total energy + Delta-G solvation = -4122.598477 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.28730 -41.26268 -39.77471 -38.24172 -37.98534 -36.89876 -34.45401 -34.05136 -33.72637 -32.04210 -30.82411 -29.92681 -27.20217 -24.99647 -24.33897 -22.95432 -22.34449 -20.69730 -19.77589 -19.48440 -19.10589 -18.44455 -18.14068 -17.86151 -17.04043 -16.89201 -16.63530 -16.39881 -16.35150 -15.80542 -15.70486 -15.59156 -15.32459 -14.62957 -14.45657 -14.27194 -14.07033 -13.60593 -13.55003 -13.34683 -13.26847 -13.05344 -12.96320 -12.80789 -12.52946 -12.47043 -12.26892 -12.07414 -11.80182 -11.30845 -11.27604 -10.86672 -10.61679 -9.99841 -9.51184 -8.92614 -8.44715 -6.13327 -0.70474 -0.43071 -0.06928 0.58185 0.80111 1.23389 1.26552 1.40216 2.03306 2.20753 2.23237 2.60513 2.79538 2.87386 3.07974 3.16448 3.32217 3.53031 3.86914 4.13590 4.16922 4.22018 4.28846 4.44517 4.57314 4.69842 4.71700 4.87284 4.98306 5.06608 5.12976 5.14248 5.28039 5.48769 5.59604 5.70875 5.76400 5.83079 5.96099 6.12268 6.31060 6.90496 7.59802 8.67612 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.009745 B = 0.008309 C = 0.006308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.682080 B = 3368.978880 C = 4437.788820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.028 3.972 3 Si 0.906 3.094 4 H -0.249 1.249 5 H -0.272 1.272 6 H -0.249 1.249 7 C -0.371 4.371 8 H 0.082 0.918 9 O -0.236 6.236 10 C 0.159 3.841 11 C -0.232 4.232 12 C -0.070 4.070 13 C -0.182 4.182 14 C -0.048 4.048 15 C -0.148 4.148 16 C 0.100 3.900 17 C -0.142 4.142 18 C -0.015 4.015 19 C -0.173 4.173 20 C 0.167 3.833 21 F -0.129 7.129 22 C -0.724 4.724 23 S 2.699 3.301 24 N -1.233 6.233 25 O -0.995 6.995 26 O -0.960 6.960 27 H 0.282 0.718 28 H 0.113 0.887 29 H 0.138 0.862 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.166 0.834 33 H 0.195 0.805 34 H 0.180 0.820 35 H 0.410 0.590 36 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.267 0.052 2.855 16.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.171 4.171 3 Si 0.728 3.272 4 H -0.174 1.174 5 H -0.197 1.197 6 H -0.173 1.173 7 C -0.448 4.448 8 H 0.099 0.901 9 O -0.143 6.143 10 C 0.109 3.891 11 C -0.251 4.251 12 C -0.088 4.088 13 C -0.200 4.200 14 C -0.066 4.066 15 C -0.149 4.149 16 C 0.098 3.902 17 C -0.160 4.160 18 C -0.032 4.032 19 C -0.192 4.192 20 C 0.146 3.854 21 F -0.107 7.107 22 C -0.814 4.814 23 S 2.789 3.211 24 N -0.911 5.911 25 O -0.985 6.985 26 O -0.949 6.949 27 H 0.092 0.908 28 H 0.131 0.869 29 H 0.156 0.844 30 H 0.169 0.831 31 H 0.167 0.833 32 H 0.183 0.817 33 H 0.212 0.788 34 H 0.197 0.803 35 H 0.239 0.761 36 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 16.540 -0.329 2.114 16.677 hybrid contribution -1.152 1.258 0.027 1.706 sum 15.388 0.930 2.141 15.564 Atomic orbital electron populations 1.69685 1.06620 1.29051 1.50716 1.24868 0.95368 1.00431 0.96406 0.86198 0.80424 0.80055 0.80485 1.17352 1.19712 1.17294 1.20493 0.77609 0.95689 1.50999 0.90051 1.83429 1.21519 1.26698 1.82687 1.19230 0.91089 0.85519 0.93222 1.21214 1.00227 0.93628 1.10073 1.21224 0.95572 0.96282 0.95675 1.21069 0.93393 0.99076 1.06468 1.21011 1.00288 0.89850 0.95476 1.17968 0.89178 0.93949 1.13854 1.18313 0.91223 0.90759 0.89910 1.21876 0.96704 0.98009 0.99460 1.21853 0.94238 0.91281 0.95859 1.21729 1.00662 1.03701 0.93136 1.17428 0.96202 0.89601 0.82197 1.91604 1.94808 1.80423 1.43864 1.30421 1.22555 1.10721 1.17731 1.01232 0.73158 0.73738 0.72931 1.52843 1.32243 1.58468 1.47537 1.93554 1.78328 1.83611 1.42991 1.93654 1.84008 1.33759 1.83483 0.90829 0.86884 0.84434 0.83089 0.83264 0.81659 0.78794 0.80264 0.76054 0.74545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.53 13.96 21.61 0.30 -51.22 16 2 C 0.03 1.48 5.49 84.83 0.47 1.95 16 3 Si 0.91 40.10 26.12 68.60 1.79 41.89 16 4 H -0.25 -10.24 6.80 99.48 0.68 -9.56 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.25 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.37 -19.72 9.45 67.92 0.64 -19.08 16 8 H 0.08 4.67 5.54 -2.91 -0.02 4.65 16 9 O -0.24 -11.33 5.69 -21.62 -0.12 -11.46 16 10 C 0.16 7.03 4.81 22.81 0.11 7.14 16 11 C -0.23 -9.97 9.13 22.36 0.20 -9.77 16 12 C -0.07 -2.40 10.03 22.29 0.22 -2.17 16 13 C -0.18 -5.45 10.03 22.27 0.22 -5.23 16 14 C -0.05 -1.52 9.63 22.47 0.22 -1.30 16 15 C -0.15 -5.52 3.12 -19.93 -0.06 -5.59 16 16 C 0.10 3.35 4.87 -20.05 -0.10 3.25 16 17 C -0.14 -3.42 9.77 22.50 0.22 -3.20 16 18 C -0.01 -0.26 10.03 22.23 0.22 -0.04 16 19 C -0.17 -3.77 10.02 22.36 0.22 -3.54 16 20 C 0.17 5.28 7.19 22.34 0.16 5.44 16 21 F -0.13 -4.42 15.47 44.97 0.70 -3.73 16 22 C -0.72 -26.21 5.87 22.54 0.13 -26.07 16 23 S 2.70 109.83 5.49 -56.49 -0.31 109.52 16 24 N -1.23 -50.22 8.14 37.02 0.30 -49.91 16 25 O -1.00 -43.14 16.37 -128.00 -2.09 -45.24 16 26 O -0.96 -42.25 13.89 -128.00 -1.78 -44.03 16 27 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 28 H 0.11 5.25 5.72 -2.91 -0.02 5.23 16 29 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 30 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 31 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 32 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 33 H 0.19 1.43 8.06 -2.91 -0.02 1.40 16 34 H 0.18 2.52 8.06 -2.91 -0.02 2.49 16 35 H 0.41 17.25 4.57 -96.75 -0.44 16.80 16 36 H 0.42 15.72 8.96 -96.75 -0.87 14.86 16 Total: -1.00 -71.38 317.04 1.51 -69.87 By element: Atomic # 1 Polarization: 42.69 SS G_CDS: -0.16 Total: 42.53 kcal Atomic # 6 Polarization: -61.11 SS G_CDS: 2.88 Total: -58.23 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: 0.60 Total: -101.14 kcal Atomic # 8 Polarization: -96.72 SS G_CDS: -4.00 Total: -100.72 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.70 Total: -3.73 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 1.79 Total: 41.89 kcal Atomic # 16 Polarization: 109.83 SS G_CDS: -0.31 Total: 109.52 kcal Total: -71.38 1.51 -69.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587477.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.221 kcal (2) G-P(sol) polarization free energy of solvation -71.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds