Wall clock time and date at job start Tue Mar 31 2020 20:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48501 * 109.47405 * 240.00412 * 3 2 1 5 5 H 1.48508 * 109.47183 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47357 * 120.00432 * 3 2 1 7 7 C 1.38650 * 120.00304 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99999 * 179.97438 * 7 2 1 9 9 O 1.34810 * 119.99863 * 359.97438 * 7 2 1 10 10 C 1.35656 * 117.00145 * 185.05401 * 9 7 2 11 11 C 1.38760 * 120.13679 * 354.42585 * 10 9 7 12 12 C 1.38107 * 120.04917 * 180.02562 * 11 10 9 13 13 C 1.38438 * 120.32849 * 359.97438 * 12 11 10 14 14 C 1.38016 * 120.27139 * 359.73940 * 13 12 11 15 15 C 1.39290 * 119.94053 * 0.53198 * 14 13 12 16 16 C 1.48285 * 120.15880 * 179.74303 * 15 14 13 17 17 C 1.39386 * 120.11440 * 256.95420 * 16 15 14 18 18 C 1.38209 * 119.84155 * 180.02562 * 17 16 15 19 19 F 1.35107 * 119.95751 * 179.97438 * 18 17 16 20 20 C 1.38571 * 120.07919 * 0.02562 * 18 17 16 21 21 C 1.38278 * 120.22986 * 359.74270 * 20 18 17 22 22 C 1.38034 * 120.15026 * 0.51262 * 21 20 18 23 23 S 1.76192 * 120.03875 * 179.76858 * 22 21 20 24 24 N 1.65602 * 107.22044 * 112.96914 * 23 22 21 25 25 O 1.42103 * 106.40496 * 226.50851 * 23 22 21 26 26 O 1.42102 * 106.40285 * 359.42526 * 23 22 21 27 27 H 0.97004 * 120.00143 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.97221 * 0.02669 * 11 10 9 29 29 H 1.08007 * 119.83345 * 179.97438 * 12 11 10 30 30 H 1.07998 * 119.86839 * 180.02562 * 13 12 11 31 31 H 1.08000 * 120.03020 * 180.27756 * 14 13 12 32 32 H 1.07992 * 120.07868 * 359.97438 * 17 16 15 33 33 H 1.08000 * 119.88526 * 179.97438 * 20 18 17 34 34 H 1.07998 * 119.92221 * 180.27602 * 21 20 18 35 35 H 0.97001 * 119.99559 * 262.21345 * 24 23 22 36 36 H 0.96992 * 120.00076 * 82.21006 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1034 1.6964 1.2124 7 6 2.0089 -1.2007 -0.0005 8 1 3.0888 -1.2006 -0.0010 9 8 1.3349 -2.3682 -0.0005 10 6 2.0697 -3.5036 0.1054 11 6 3.4557 -3.4402 0.0912 12 6 4.2021 -4.5973 0.1987 13 6 3.5744 -5.8251 0.3215 14 6 2.1966 -5.9031 0.3430 15 6 1.4328 -4.7438 0.2297 16 6 -0.0478 -4.8226 0.2466 17 6 -0.7678 -4.7081 -0.9415 18 6 -2.1477 -4.7819 -0.9192 19 9 -2.8480 -4.6707 -2.0693 20 6 -2.8140 -4.9686 0.2814 21 6 -2.1026 -5.0873 1.4612 22 6 -0.7245 -5.0098 1.4507 23 16 0.1787 -5.1554 2.9565 24 7 1.0385 -6.5685 2.8778 25 8 1.1343 -4.1036 2.9546 26 8 -0.7844 -5.3285 3.9869 27 1 -0.4850 0.8401 0.0004 28 1 3.9513 -2.4853 -0.0039 29 1 5.2807 -4.5440 0.1868 30 1 4.1653 -6.7252 0.4054 31 1 1.7111 -6.8626 0.4435 32 1 -0.2486 -4.5614 -1.8770 33 1 -3.8924 -5.0253 0.2953 34 1 -2.6267 -5.2372 2.3936 35 1 0.6942 -7.3700 3.3020 36 1 1.8864 -6.5947 2.4075 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243589337.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:43 Heat of formation + Delta-G solvation = -87.480244 kcal Electronic energy + Delta-G solvation = -27473.227946 eV Core-core repulsion = 23351.002931 eV Total energy + Delta-G solvation = -4122.225015 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.82366 -39.65284 -38.26388 -36.89403 -36.41235 -35.42617 -33.13609 -32.50557 -32.09533 -30.65571 -29.36198 -28.39830 -25.44072 -23.49176 -22.94404 -21.64848 -20.87945 -19.29001 -18.15602 -17.94247 -17.38964 -17.26398 -16.65985 -16.54277 -16.15450 -15.47358 -15.05571 -14.71704 -14.53630 -14.38683 -14.12012 -13.77846 -13.67205 -13.24810 -13.09679 -12.92677 -12.72710 -12.17389 -11.95547 -11.75224 -11.66537 -11.60213 -11.40018 -11.33559 -10.94318 -10.92974 -10.78294 -10.71473 -10.50239 -10.15044 -9.47741 -8.89985 -8.87022 -8.77697 -8.29391 -7.35788 -6.49797 -4.08455 0.72875 0.98805 1.37871 1.86005 2.23568 3.10690 3.13895 3.15725 3.36029 3.70807 3.92261 4.08665 4.27677 4.39098 4.69144 4.85289 4.98399 5.07234 5.13826 5.20689 5.44614 5.54453 5.64177 5.82053 5.90772 6.00594 6.10935 6.14083 6.19859 6.21926 6.39812 6.50747 6.64287 6.87747 6.93985 7.04105 7.21685 7.27210 7.29717 7.62700 7.92240 8.94385 9.59322 10.66820 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.009647 B = 0.005941 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2901.851742 B = 4712.065056 C = 5631.265955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.043 3.957 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.392 4.392 8 H 0.094 0.906 9 O -0.157 6.157 10 C 0.199 3.801 11 C -0.223 4.223 12 C -0.058 4.058 13 C -0.217 4.217 14 C -0.076 4.076 15 C -0.188 4.188 16 C 0.134 3.866 17 C -0.153 4.153 18 C 0.154 3.846 19 F -0.136 7.136 20 C -0.185 4.185 21 C 0.003 3.997 22 C -0.684 4.684 23 S 2.700 3.300 24 N -1.247 6.247 25 O -0.926 6.926 26 O -0.974 6.974 27 H 0.272 0.728 28 H 0.132 0.868 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.149 0.851 35 H 0.414 0.586 36 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.589 -13.159 1.322 13.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.162 4.162 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.468 4.468 8 H 0.112 0.888 9 O -0.058 6.058 10 C 0.142 3.858 11 C -0.242 4.242 12 C -0.076 4.076 13 C -0.236 4.236 14 C -0.094 4.094 15 C -0.190 4.190 16 C 0.133 3.867 17 C -0.172 4.172 18 C 0.135 3.865 19 F -0.114 7.114 20 C -0.204 4.204 21 C -0.017 4.017 22 C -0.770 4.770 23 S 2.786 3.214 24 N -0.921 5.921 25 O -0.916 6.916 26 O -0.964 6.964 27 H 0.082 0.918 28 H 0.150 0.850 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.138 0.862 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.166 0.834 35 H 0.242 0.758 36 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -0.005 -12.130 1.944 12.285 hybrid contribution 0.230 0.445 -1.124 1.230 sum 0.225 -11.685 0.820 11.716 Atomic orbital electron populations 1.70032 1.05985 1.27986 1.44651 1.25308 0.95855 0.98897 0.96189 0.85783 0.78789 0.79632 0.79274 1.19447 1.20208 1.19279 1.21313 0.91871 0.80577 1.53058 0.88850 1.83945 1.34427 1.11419 1.75959 1.19024 0.89950 0.86885 0.89946 1.21171 0.93392 0.99395 1.10281 1.20877 0.98769 0.92293 0.95679 1.20484 0.93667 0.97311 1.12153 1.20738 0.93974 0.95513 0.99178 1.17774 0.89840 0.92496 1.18904 1.17890 0.92061 0.86533 0.90235 1.21313 0.91822 1.04054 1.00057 1.17823 0.89826 0.97157 0.81731 1.91508 1.79008 1.92911 1.47994 1.21121 1.00851 1.07086 0.91372 1.20643 0.91653 0.91003 0.98356 1.31127 1.06366 1.19794 1.19712 1.01663 0.73439 0.73062 0.73210 1.53732 1.36249 1.30062 1.72044 1.93714 1.59806 1.52050 1.86022 1.93543 1.62716 1.86224 1.53943 0.91816 0.85002 0.87031 0.86872 0.86161 0.84086 0.84290 0.83374 0.75823 0.74629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.90 13.67 55.48 0.76 -24.14 16 2 C 0.04 1.18 5.49 -17.52 -0.10 1.09 16 3 Si 0.94 20.52 29.55 -169.99 -5.02 15.49 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.39 -10.84 9.49 30.88 0.29 -10.55 16 8 H 0.09 2.36 5.21 -52.49 -0.27 2.09 16 9 O -0.16 -4.36 9.21 0.39 0.00 -4.36 16 10 C 0.20 4.65 6.20 -38.74 -0.24 4.41 16 11 C -0.22 -4.66 9.16 -39.44 -0.36 -5.02 16 12 C -0.06 -0.97 10.03 -39.56 -0.40 -1.37 16 13 C -0.22 -3.25 10.03 -39.59 -0.40 -3.65 16 14 C -0.08 -1.19 6.84 -39.27 -0.27 -1.46 16 15 C -0.19 -3.73 3.38 -104.73 -0.35 -4.08 16 16 C 0.13 2.60 4.83 -104.91 -0.51 2.09 16 17 C -0.15 -2.87 9.76 -39.17 -0.38 -3.25 16 18 C 0.15 2.66 7.29 -39.47 -0.29 2.37 16 19 F -0.14 -2.27 17.27 2.25 0.04 -2.23 16 20 C -0.18 -2.84 10.02 -39.44 -0.40 -3.23 16 21 C 0.00 0.04 9.54 -39.64 -0.38 -0.33 16 22 C -0.68 -12.20 5.94 -39.23 -0.23 -12.43 16 23 S 2.70 46.08 5.63 -107.50 -0.61 45.47 16 24 N -1.25 -14.62 8.83 60.35 0.53 -14.09 16 25 O -0.93 -20.24 16.26 -57.17 -0.93 -21.17 16 26 O -0.97 -17.41 16.97 -57.17 -0.97 -18.38 16 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.13 2.74 5.64 -52.48 -0.30 2.44 16 29 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 30 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.12 1.46 7.42 -52.49 -0.39 1.07 16 32 H 0.14 2.56 8.06 -52.49 -0.42 2.14 16 33 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.15 1.98 7.33 -52.49 -0.38 1.60 16 35 H 0.41 3.39 8.96 -34.47 -0.31 3.08 16 36 H 0.42 4.78 5.89 -34.47 -0.20 4.57 16 LS Contribution 327.70 15.07 4.94 4.94 Total: -1.00 -34.76 327.70 -7.94 -42.70 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -2.68 Total: 11.18 kcal Atomic # 6 Polarization: -31.41 SS G_CDS: -4.01 Total: -35.42 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 1.29 Total: -38.23 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -1.90 Total: -43.90 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 46.08 SS G_CDS: -0.61 Total: 45.47 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.76 -7.94 -42.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589337.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.783 kcal (2) G-P(sol) polarization free energy of solvation -34.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds