Wall clock time and date at job start Tue Mar 31 2020 20:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48501 * 109.47405 * 240.00412 * 3 2 1 5 5 H 1.48508 * 109.47183 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47357 * 120.00432 * 3 2 1 7 7 C 1.38650 * 120.00304 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99999 * 179.97438 * 7 2 1 9 9 O 1.34810 * 119.99863 * 359.97438 * 7 2 1 10 10 C 1.35656 * 117.00145 * 185.05401 * 9 7 2 11 11 C 1.38760 * 120.13679 * 354.42585 * 10 9 7 12 12 C 1.38107 * 120.04917 * 180.02562 * 11 10 9 13 13 C 1.38438 * 120.32849 * 359.97438 * 12 11 10 14 14 C 1.38016 * 120.27139 * 359.73940 * 13 12 11 15 15 C 1.39290 * 119.94053 * 0.53198 * 14 13 12 16 16 C 1.48285 * 120.15880 * 179.74303 * 15 14 13 17 17 C 1.39386 * 120.11440 * 256.95420 * 16 15 14 18 18 C 1.38209 * 119.84155 * 180.02562 * 17 16 15 19 19 F 1.35107 * 119.95751 * 179.97438 * 18 17 16 20 20 C 1.38571 * 120.07919 * 0.02562 * 18 17 16 21 21 C 1.38278 * 120.22986 * 359.74270 * 20 18 17 22 22 C 1.38034 * 120.15026 * 0.51262 * 21 20 18 23 23 S 1.76192 * 120.03875 * 179.76858 * 22 21 20 24 24 N 1.65602 * 107.22044 * 112.96914 * 23 22 21 25 25 O 1.42103 * 106.40496 * 226.50851 * 23 22 21 26 26 O 1.42102 * 106.40285 * 359.42526 * 23 22 21 27 27 H 0.97004 * 120.00143 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.97221 * 0.02669 * 11 10 9 29 29 H 1.08007 * 119.83345 * 179.97438 * 12 11 10 30 30 H 1.07998 * 119.86839 * 180.02562 * 13 12 11 31 31 H 1.08000 * 120.03020 * 180.27756 * 14 13 12 32 32 H 1.07992 * 120.07868 * 359.97438 * 17 16 15 33 33 H 1.08000 * 119.88526 * 179.97438 * 20 18 17 34 34 H 1.07998 * 119.92221 * 180.27602 * 21 20 18 35 35 H 0.97001 * 119.99559 * 262.21345 * 24 23 22 36 36 H 0.96992 * 120.00076 * 82.21006 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1034 1.6964 1.2124 7 6 2.0089 -1.2007 -0.0005 8 1 3.0888 -1.2006 -0.0010 9 8 1.3349 -2.3682 -0.0005 10 6 2.0697 -3.5036 0.1054 11 6 3.4557 -3.4402 0.0912 12 6 4.2021 -4.5973 0.1987 13 6 3.5744 -5.8251 0.3215 14 6 2.1966 -5.9031 0.3430 15 6 1.4328 -4.7438 0.2297 16 6 -0.0478 -4.8226 0.2466 17 6 -0.7678 -4.7081 -0.9415 18 6 -2.1477 -4.7819 -0.9192 19 9 -2.8480 -4.6707 -2.0693 20 6 -2.8140 -4.9686 0.2814 21 6 -2.1026 -5.0873 1.4612 22 6 -0.7245 -5.0098 1.4507 23 16 0.1787 -5.1554 2.9565 24 7 1.0385 -6.5685 2.8778 25 8 1.1343 -4.1036 2.9546 26 8 -0.7844 -5.3285 3.9869 27 1 -0.4850 0.8401 0.0004 28 1 3.9513 -2.4853 -0.0039 29 1 5.2807 -4.5440 0.1868 30 1 4.1653 -6.7252 0.4054 31 1 1.7111 -6.8626 0.4435 32 1 -0.2486 -4.5614 -1.8770 33 1 -3.8924 -5.0253 0.2953 34 1 -2.6267 -5.2372 2.3936 35 1 0.6942 -7.3700 3.3020 36 1 1.8864 -6.5947 2.4075 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243589337.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:42 Heat of formation + Delta-G solvation = -113.834260 kcal Electronic energy + Delta-G solvation = -27474.370742 eV Core-core repulsion = 23351.002931 eV Total energy + Delta-G solvation = -4123.367811 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.17470 -41.16154 -39.72315 -38.39698 -37.94879 -36.91710 -34.32762 -34.29326 -33.54504 -32.01085 -30.81428 -29.87287 -27.35373 -24.87712 -24.29778 -23.22241 -22.30517 -20.61473 -19.86476 -19.40560 -18.77055 -18.49215 -18.15890 -17.94785 -17.47788 -16.83732 -16.55488 -16.34875 -16.11410 -15.78585 -15.52620 -15.43868 -15.16882 -14.55074 -14.50250 -14.44394 -14.27471 -13.62723 -13.48675 -13.30512 -13.16038 -13.12758 -12.93880 -12.73546 -12.51512 -12.41163 -12.21173 -12.17320 -12.08732 -11.34080 -11.17240 -10.79652 -10.24910 -10.12973 -9.71033 -8.96748 -8.46269 -6.13006 -0.60069 -0.39489 0.02199 0.42075 0.76384 1.32122 1.43598 1.47917 2.04630 2.16216 2.39838 2.74746 2.80387 2.97633 3.13923 3.34394 3.44815 3.54698 3.76729 3.93532 4.15885 4.21580 4.28417 4.48703 4.59508 4.64683 4.71149 4.86598 4.88169 5.01033 5.03210 5.12857 5.21454 5.23563 5.52570 5.61871 5.71420 5.74944 6.00742 6.20569 6.42359 6.98164 7.78075 8.75751 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.009647 B = 0.005941 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2901.851742 B = 4712.065056 C = 5631.265955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.020 4.020 3 Si 1.012 2.988 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.412 4.412 8 H 0.101 0.899 9 O -0.213 6.213 10 C 0.158 3.842 11 C -0.249 4.249 12 C -0.057 4.057 13 C -0.186 4.186 14 C -0.075 4.075 15 C -0.189 4.189 16 C 0.111 3.889 17 C -0.175 4.175 18 C 0.145 3.855 19 F -0.135 7.135 20 C -0.175 4.175 21 C 0.001 3.999 22 C -0.695 4.695 23 S 2.718 3.282 24 N -1.220 6.220 25 O -0.979 6.979 26 O -0.984 6.984 27 H 0.271 0.729 28 H 0.118 0.882 29 H 0.150 0.850 30 H 0.169 0.831 31 H 0.165 0.835 32 H 0.131 0.869 33 H 0.177 0.823 34 H 0.176 0.824 35 H 0.434 0.566 36 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.857 -16.354 2.092 16.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.218 4.218 3 Si 0.831 3.169 4 H -0.178 1.178 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.488 4.488 8 H 0.119 0.881 9 O -0.118 6.118 10 C 0.106 3.894 11 C -0.268 4.268 12 C -0.075 4.075 13 C -0.204 4.204 14 C -0.093 4.093 15 C -0.191 4.191 16 C 0.110 3.890 17 C -0.194 4.194 18 C 0.125 3.875 19 F -0.113 7.113 20 C -0.194 4.194 21 C -0.018 4.018 22 C -0.781 4.781 23 S 2.803 3.197 24 N -0.901 5.901 25 O -0.969 6.969 26 O -0.974 6.974 27 H 0.079 0.921 28 H 0.136 0.864 29 H 0.168 0.832 30 H 0.187 0.813 31 H 0.182 0.818 32 H 0.149 0.851 33 H 0.194 0.806 34 H 0.194 0.806 35 H 0.267 0.733 36 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 1.305 -15.408 2.715 15.700 hybrid contribution -0.053 0.975 -1.338 1.656 sum 1.252 -14.433 1.378 14.553 Atomic orbital electron populations 1.70183 1.07883 1.28600 1.48546 1.26506 0.96808 1.02581 0.95947 0.84749 0.77537 0.74691 0.79899 1.17838 1.19714 1.18506 1.21764 0.92490 0.81547 1.52994 0.88142 1.83917 1.35685 1.12308 1.79853 1.19702 0.91290 0.87093 0.91316 1.21349 0.92963 1.00776 1.11720 1.21364 1.00626 0.91503 0.94028 1.21208 0.93669 0.98468 1.07031 1.21344 0.94580 0.95883 0.97513 1.18199 0.90723 0.92534 1.17623 1.18001 0.92194 0.87903 0.90895 1.21374 0.92892 1.05251 0.99908 1.17984 0.89470 0.97463 0.82577 1.91505 1.78791 1.92941 1.48111 1.21535 1.02705 1.04972 0.90170 1.21069 0.91087 0.89955 0.99688 1.31288 1.07501 1.20054 1.19269 1.00871 0.72872 0.73263 0.72659 1.53153 1.35661 1.29326 1.71974 1.93666 1.61416 1.55110 1.86688 1.93517 1.63076 1.86549 1.54238 0.92055 0.86384 0.83248 0.81340 0.81768 0.85077 0.80561 0.80626 0.73314 0.73845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.20 13.67 21.61 0.30 -56.90 16 2 C -0.02 -1.18 5.49 84.83 0.47 -0.72 16 3 Si 1.01 44.15 29.55 68.60 2.03 46.18 16 4 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.41 -24.34 9.49 67.92 0.64 -23.69 16 8 H 0.10 5.45 5.21 -2.91 -0.02 5.43 16 9 O -0.21 -12.71 9.21 -21.51 -0.20 -12.91 16 10 C 0.16 7.70 6.20 22.81 0.14 7.84 16 11 C -0.25 -10.55 9.16 22.36 0.20 -10.34 16 12 C -0.06 -1.76 10.03 22.29 0.22 -1.53 16 13 C -0.19 -4.63 10.03 22.26 0.22 -4.40 16 14 C -0.08 -2.11 6.84 22.47 0.15 -1.96 16 15 C -0.19 -7.47 3.38 -19.93 -0.07 -7.53 16 16 C 0.11 4.36 4.83 -20.05 -0.10 4.26 16 17 C -0.17 -6.79 9.76 22.54 0.22 -6.57 16 18 C 0.14 5.01 7.29 22.34 0.16 5.17 16 19 F -0.14 -4.54 17.27 44.97 0.78 -3.76 16 20 C -0.17 -5.11 10.02 22.36 0.22 -4.88 16 21 C 0.00 0.03 9.54 22.23 0.21 0.24 16 22 C -0.70 -24.43 5.94 22.50 0.13 -24.30 16 23 S 2.72 89.81 5.63 -56.49 -0.32 89.49 16 24 N -1.22 -24.59 8.83 37.02 0.33 -24.26 16 25 O -0.98 -43.46 16.26 -128.00 -2.08 -45.54 16 26 O -0.98 -33.63 16.97 -128.00 -2.17 -35.81 16 27 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 28 H 0.12 5.17 5.64 -2.91 -0.02 5.15 16 29 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 30 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 31 H 0.16 3.13 7.42 -2.91 -0.02 3.10 16 32 H 0.13 5.14 8.06 -2.91 -0.02 5.11 16 33 H 0.18 3.74 8.06 -2.91 -0.02 3.72 16 34 H 0.18 4.26 7.33 -2.91 -0.02 4.24 16 35 H 0.43 5.35 8.96 -96.75 -0.87 4.48 16 36 H 0.43 7.91 5.89 -96.75 -0.57 7.34 16 Total: -1.00 -84.32 327.70 1.25 -83.08 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: -0.25 Total: 28.86 kcal Atomic # 6 Polarization: -71.27 SS G_CDS: 2.85 Total: -68.42 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: 0.62 Total: -81.16 kcal Atomic # 8 Polarization: -89.81 SS G_CDS: -4.45 Total: -94.26 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.78 Total: -3.76 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: 89.81 SS G_CDS: -0.32 Total: 89.49 kcal Total: -84.32 1.25 -83.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589337.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.758 kcal (2) G-P(sol) polarization free energy of solvation -84.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds