Wall clock time and date at job start Tue Mar 31 2020 20:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86799 * 119.99704 * 2 1 4 4 H 1.48500 * 109.47139 * 269.99677 * 3 2 1 5 5 H 1.48497 * 109.47137 * 29.99942 * 3 2 1 6 6 H 1.48503 * 109.46830 * 149.99990 * 3 2 1 7 7 C 1.38644 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99934 * 359.97438 * 7 2 1 9 9 O 1.34816 * 119.99726 * 180.02562 * 7 2 1 10 10 C 1.35701 * 116.99475 * 185.05147 * 9 7 2 11 11 C 1.38992 * 119.95146 * 354.45621 * 10 9 7 12 12 C 1.37843 * 120.05348 * 180.24603 * 11 10 9 13 13 C 1.39443 * 119.94456 * 359.47553 * 12 11 10 14 14 C 1.48306 * 120.04908 * 180.27017 * 13 12 11 15 15 C 1.39366 * 120.14171 * 310.25104 * 14 13 12 16 16 C 1.37991 * 119.90293 * 180.02562 * 15 14 13 17 17 C 1.38367 * 120.17257 * 0.02562 * 16 15 14 18 18 S 1.76198 * 119.85940 * 179.97438 * 17 16 15 19 19 N 1.65602 * 107.22110 * 89.99731 * 18 17 16 20 20 O 1.42098 * 106.40227 * 203.53561 * 18 17 16 21 21 O 1.42098 * 106.40425 * 336.45899 * 18 17 16 22 22 C 1.38264 * 120.28156 * 359.97438 * 17 16 15 23 23 C 1.38271 * 120.09570 * 359.72469 * 22 17 16 24 24 F 1.35100 * 120.09020 * 180.28199 * 23 22 17 25 25 C 1.39436 * 119.89622 * 0.52705 * 13 12 11 26 26 C 1.37845 * 119.94509 * 359.71963 * 25 13 12 27 27 H 0.96998 * 119.99862 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.97706 * 359.97438 * 11 10 9 29 29 H 1.08004 * 120.02491 * 179.70472 * 12 11 10 30 30 H 1.08005 * 120.05249 * 359.97438 * 15 14 13 31 31 H 1.07997 * 119.91717 * 180.02562 * 16 15 14 32 32 H 0.96993 * 120.00673 * 149.99538 * 19 18 17 33 33 H 0.97001 * 119.99910 * 330.00500 * 19 18 17 34 34 H 1.08001 * 119.95430 * 180.02562 * 22 17 16 35 35 H 1.07996 * 120.03256 * 179.74676 * 25 13 12 36 36 H 1.07998 * 119.97505 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4688 -2.1360 0.0014 9 8 3.3570 -1.2006 0.0011 10 6 3.9731 -2.4051 -0.1049 11 6 3.2201 -3.5733 -0.0914 12 6 3.8441 -4.7981 -0.1938 13 6 5.2311 -4.8640 -0.3220 14 6 5.9043 -6.1803 -0.4384 15 6 5.6145 -7.1973 0.4694 16 6 6.2442 -8.4200 0.3569 17 6 7.1629 -8.6386 -0.6544 18 16 7.9626 -10.2028 -0.7901 19 7 7.0239 -11.1499 -1.7719 20 8 9.1755 -9.9736 -1.4940 21 8 7.9133 -10.7921 0.5020 22 6 7.4560 -7.6349 -1.5591 23 6 6.8271 -6.4074 -1.4606 24 9 7.1094 -5.4286 -2.3480 25 6 5.9844 -3.6908 -0.3352 26 6 5.3563 -2.4685 -0.2274 27 1 -0.4850 0.8400 -0.0004 28 1 2.1455 -3.5215 0.0038 29 1 3.2589 -5.7057 -0.1784 30 1 4.8986 -7.0285 1.2604 31 1 6.0195 -9.2084 1.0599 32 1 7.4344 -11.8369 -2.3199 33 1 6.0633 -11.0176 -1.7992 34 1 8.1736 -7.8114 -2.3466 35 1 7.0591 -3.7395 -0.4303 36 1 5.9392 -1.5594 -0.2380 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243591237.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:23 Heat of formation + Delta-G solvation = -118.446592 kcal Electronic energy + Delta-G solvation = -25211.793732 eV Core-core repulsion = 21088.225916 eV Total energy + Delta-G solvation = -4123.567816 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.98739 -41.11549 -40.14079 -38.27112 -38.26883 -36.94634 -34.58045 -34.03533 -33.44817 -32.09292 -31.72206 -29.77473 -27.34358 -24.89241 -24.23949 -23.35255 -22.25918 -20.65460 -19.93592 -19.60199 -19.22219 -18.34303 -18.01787 -17.66126 -17.36907 -16.79404 -16.68812 -16.57039 -16.17776 -15.88457 -15.77804 -15.51123 -15.11979 -14.71419 -14.47381 -14.28302 -14.17197 -14.01689 -13.74814 -13.25966 -13.24192 -13.21375 -13.13490 -12.87635 -12.75647 -12.60871 -12.50644 -12.01145 -11.88301 -11.41176 -11.29924 -11.00821 -10.54529 -10.00133 -9.96899 -9.02627 -8.54901 -6.27479 -0.77126 -0.53124 0.00269 0.45370 0.50751 1.30788 1.33766 1.50065 2.02341 2.24595 2.27605 2.65853 2.73271 2.92364 3.03202 3.07120 3.39035 3.45668 3.76469 3.89128 3.98454 4.04266 4.13836 4.38440 4.42611 4.57079 4.62271 4.77974 4.86252 4.91502 5.04765 5.11392 5.25913 5.30600 5.41866 5.53151 5.64758 5.69971 5.78179 6.07968 6.38121 6.78802 7.49527 8.55879 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.034154 B = 0.002243 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.625708 B =12479.160216 C =12878.038679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.402 4.402 8 H 0.088 0.912 9 O -0.237 6.237 10 C 0.136 3.864 11 C -0.235 4.235 12 C -0.040 4.040 13 C -0.151 4.151 14 C -0.002 4.002 15 C -0.107 4.107 16 C -0.021 4.021 17 C -0.659 4.659 18 S 2.737 3.263 19 N -1.231 6.231 20 O -0.992 6.992 21 O -0.984 6.984 22 C -0.050 4.050 23 C 0.063 3.937 24 F -0.140 7.140 25 C -0.045 4.045 26 C -0.191 4.191 27 H 0.286 0.714 28 H 0.120 0.880 29 H 0.148 0.852 30 H 0.162 0.838 31 H 0.176 0.824 32 H 0.431 0.569 33 H 0.431 0.569 34 H 0.166 0.834 35 H 0.140 0.860 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.603 -22.023 -2.776 26.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.478 4.478 8 H 0.105 0.895 9 O -0.143 6.143 10 C 0.086 3.914 11 C -0.254 4.254 12 C -0.058 4.058 13 C -0.152 4.152 14 C -0.003 4.003 15 C -0.126 4.126 16 C -0.040 4.040 17 C -0.745 4.745 18 S 2.823 3.177 19 N -0.911 5.911 20 O -0.982 6.982 21 O -0.973 6.973 22 C -0.070 4.070 23 C 0.043 3.957 24 F -0.118 7.118 25 C -0.063 4.063 26 C -0.210 4.210 27 H 0.096 0.904 28 H 0.138 0.862 29 H 0.166 0.834 30 H 0.179 0.821 31 H 0.194 0.806 32 H 0.265 0.735 33 H 0.261 0.739 34 H 0.183 0.817 35 H 0.158 0.842 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 14.404 -21.756 -2.272 26.191 hybrid contribution -1.082 1.591 -0.613 2.019 sum 13.322 -20.166 -2.885 24.340 Atomic orbital electron populations 1.69716 1.06855 1.29781 1.49302 1.25261 0.95856 1.02124 0.95305 0.85261 0.78891 0.77573 0.79306 1.19142 1.19141 1.18664 1.20752 0.77813 0.96376 1.52853 0.89476 1.83516 1.21579 1.27411 1.81824 1.19749 0.92949 0.85291 0.93428 1.21253 1.00680 0.92619 1.10816 1.21059 0.93096 0.96952 0.94670 1.18443 0.93269 0.91622 1.11828 1.19211 0.93658 0.93864 0.93541 1.21570 1.00729 0.91671 0.98628 1.21297 0.90462 0.97980 0.94280 1.30659 1.15892 1.21996 1.05991 1.00433 0.72007 0.72365 0.72873 1.52721 1.21959 1.52121 1.64326 1.93569 1.44613 1.85808 1.74171 1.93600 1.86309 1.75825 1.41597 1.20919 0.97159 0.90363 0.98511 1.17956 1.00062 0.87090 0.90596 1.91512 1.92454 1.61370 1.66497 1.20969 0.99787 0.90227 0.95367 1.20387 0.90835 0.99365 1.10400 0.90403 0.86207 0.83425 0.82086 0.80618 0.73544 0.73918 0.81663 0.84181 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.04 13.96 21.61 0.30 -52.74 16 2 C 0.01 0.78 5.49 84.83 0.47 1.25 16 3 Si 0.97 44.08 28.62 68.60 1.96 46.04 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.40 -22.74 9.94 67.92 0.68 -22.07 16 8 H 0.09 5.10 5.42 -2.91 -0.02 5.09 16 9 O -0.24 -12.37 8.58 -22.06 -0.19 -12.56 16 10 C 0.14 6.08 6.65 22.63 0.15 6.23 16 11 C -0.23 -9.58 9.15 22.36 0.20 -9.38 16 12 C -0.04 -1.27 9.49 22.47 0.21 -1.05 16 13 C -0.15 -4.48 5.32 -20.02 -0.11 -4.59 16 14 C 0.00 -0.04 5.48 -20.00 -0.11 -0.15 16 15 C -0.11 -1.91 9.50 22.48 0.21 -1.70 16 16 C -0.02 -0.30 9.50 22.24 0.21 -0.09 16 17 C -0.66 -9.91 5.98 22.31 0.13 -9.78 16 18 S 2.74 36.04 6.28 -56.49 -0.35 35.69 16 19 N -1.23 -5.97 9.52 37.02 0.35 -5.62 16 20 O -0.99 -19.72 17.27 -128.00 -2.21 -21.93 16 21 O -0.98 -18.61 17.27 -128.00 -2.21 -20.82 16 22 C -0.05 -0.91 9.49 22.28 0.21 -0.70 16 23 C 0.06 1.48 7.16 22.60 0.16 1.64 16 24 F -0.14 -3.77 15.92 44.97 0.72 -3.05 16 25 C -0.05 -1.44 8.86 22.47 0.20 -1.24 16 26 C -0.19 -7.14 9.98 22.36 0.22 -6.91 16 27 H 0.29 15.19 8.31 -92.71 -0.77 14.42 16 28 H 0.12 5.31 5.62 -2.91 -0.02 5.30 16 29 H 0.15 3.66 8.03 -2.91 -0.02 3.64 16 30 H 0.16 2.33 8.04 -2.91 -0.02 2.31 16 31 H 0.18 1.55 7.60 -2.91 -0.02 1.52 16 32 H 0.43 0.75 8.96 -96.75 -0.87 -0.12 16 33 H 0.43 0.20 8.96 -96.74 -0.87 -0.67 16 34 H 0.17 2.55 7.60 -2.91 -0.02 2.52 16 35 H 0.14 3.76 7.80 -2.91 -0.02 3.74 16 36 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -74.81 335.16 0.66 -74.14 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -0.55 Total: 9.38 kcal Atomic # 6 Polarization: -51.38 SS G_CDS: 2.85 Total: -48.54 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 0.65 Total: -58.36 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -4.61 Total: -55.31 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.72 Total: -3.05 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.96 Total: 46.04 kcal Atomic # 16 Polarization: 36.04 SS G_CDS: -0.35 Total: 35.69 kcal Total: -74.81 0.66 -74.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591237.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.303 kcal (2) G-P(sol) polarization free energy of solvation -74.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds