Wall clock time and date at job start Tue Mar 31 2020 20:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86800 * 119.99516 * 2 1 4 4 H 1.48491 * 109.47541 * 270.00187 * 3 2 1 5 5 H 1.48500 * 109.47190 * 30.00366 * 3 2 1 6 6 H 1.48504 * 109.47026 * 149.99927 * 3 2 1 7 7 C 1.38639 * 120.00531 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00099 * 180.02562 * 7 2 1 9 9 O 1.34824 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.35696 * 116.99763 * 185.05817 * 9 7 2 11 11 C 1.39000 * 119.95068 * 354.44710 * 10 9 7 12 12 C 1.37836 * 120.05248 * 179.97438 * 11 10 9 13 13 C 1.39442 * 119.94897 * 359.97438 * 12 11 10 14 14 C 1.48316 * 120.05324 * 179.97438 * 13 12 11 15 15 C 1.39415 * 120.09855 * 0.02562 * 14 13 12 16 16 C 1.37939 * 119.90141 * 179.97438 * 15 14 13 17 17 C 1.38577 * 120.09686 * 0.25769 * 16 15 14 18 18 F 1.35100 * 119.90110 * 179.72329 * 17 16 15 19 19 C 1.38541 * 120.20285 * 359.48546 * 17 16 15 20 20 S 1.76199 * 119.95403 * 180.23669 * 19 17 16 21 21 N 1.65593 * 107.21690 * 295.27724 * 20 19 17 22 22 O 1.42098 * 106.40149 * 48.81786 * 20 19 17 23 23 O 1.42097 * 106.40036 * 181.73426 * 20 19 17 24 24 C 1.37984 * 120.09370 * 0.51311 * 19 17 16 25 25 C 1.39441 * 119.89365 * 0.25309 * 13 12 11 26 26 C 1.37840 * 119.94481 * 359.51280 * 25 13 12 27 27 H 0.96997 * 120.00309 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.96875 * 359.97438 * 11 10 9 29 29 H 1.08004 * 120.02380 * 179.97438 * 12 11 10 30 30 H 1.08004 * 120.04889 * 359.94973 * 15 14 13 31 31 H 1.07999 * 119.95500 * 179.97438 * 16 15 14 32 32 H 0.96996 * 119.99943 * 359.97438 * 21 20 19 33 33 H 0.97002 * 119.99872 * 180.02562 * 21 20 19 34 34 H 1.08007 * 120.04855 * 179.72616 * 24 19 17 35 35 H 1.07994 * 120.02767 * 179.72213 * 25 13 12 36 36 H 1.07999 * 119.97173 * 180.23059 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0466 -1.4000 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4403 0.7001 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2005 -0.0001 9 8 1.3349 -2.3682 -0.0016 10 6 2.0699 -3.5039 0.1045 11 6 3.4582 -3.4358 0.0915 12 6 4.2069 -4.5880 0.1997 13 6 3.5706 -5.8227 0.3228 14 6 4.3740 -7.0640 0.4388 15 6 5.7666 -6.9993 0.4256 16 6 6.5097 -8.1563 0.5343 17 6 5.8741 -9.3821 0.6511 18 9 6.6058 -10.5134 0.7517 19 6 4.4905 -9.4508 0.6701 20 16 3.6891 -11.0123 0.8251 21 7 4.0549 -11.8878 -0.5320 22 8 4.3151 -11.6782 1.9132 23 8 2.2929 -10.7537 0.7718 24 6 3.7391 -8.2985 0.5619 25 6 2.1778 -5.8889 0.3309 26 6 1.4334 -4.7335 0.2273 27 1 -0.4850 0.8400 0.0004 28 1 3.9505 -2.4792 -0.0034 29 1 5.2856 -4.5346 0.1891 30 1 6.2628 -6.0448 0.3300 31 1 7.5885 -8.1073 0.5237 32 1 4.6191 -11.5024 -1.2203 33 1 3.7042 -12.7859 -0.6389 34 1 2.6604 -8.3533 0.5723 35 1 1.6828 -6.8444 0.4216 36 1 0.3546 -4.7840 0.2372 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243592812.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:47 Heat of formation + Delta-G solvation = -92.225338 kcal Electronic energy + Delta-G solvation = -25327.722639 eV Core-core repulsion = 21205.291862 eV Total energy + Delta-G solvation = -4122.430778 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.38079 -39.80558 -38.76450 -37.28739 -36.52687 -36.02749 -33.48755 -32.66277 -31.94255 -31.57005 -30.35006 -27.77742 -25.60538 -24.15568 -23.25018 -21.73722 -21.05113 -19.69734 -18.70260 -18.28501 -17.77897 -17.49830 -17.23578 -16.76147 -16.16377 -15.99242 -15.49904 -15.20295 -14.73539 -14.57294 -14.39049 -14.02994 -13.87878 -13.58106 -13.07839 -13.03033 -12.99802 -12.40046 -12.37272 -12.29061 -12.18872 -12.11429 -11.86827 -11.56545 -11.26467 -11.10079 -10.95444 -10.77325 -10.67791 -10.55132 -9.81290 -9.54291 -9.34571 -8.82877 -8.44418 -7.17692 -6.66337 -4.22289 0.09890 0.39430 0.76852 2.03681 2.08459 2.82749 3.00346 3.02035 3.07333 3.22121 3.44809 3.75674 3.79988 4.20096 4.43803 4.52973 4.75155 4.84179 4.90304 5.00138 5.07583 5.24813 5.40356 5.45801 5.61181 5.69022 5.74437 5.80443 5.94225 5.98967 6.31113 6.41884 6.51153 6.67555 6.70784 6.85731 7.03342 7.11742 7.21617 7.56224 7.78038 8.78129 9.44563 10.50306 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.027026 B = 0.002366 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.800701 B =11830.462246 C =12680.604717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.041 3.959 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.393 4.393 8 H 0.096 0.904 9 O -0.164 6.164 10 C 0.162 3.838 11 C -0.236 4.236 12 C -0.048 4.048 13 C -0.174 4.174 14 C -0.016 4.016 15 C -0.053 4.053 16 C -0.156 4.156 17 C 0.156 3.844 18 F -0.127 7.127 19 C -0.697 4.697 20 S 2.705 3.295 21 N -1.248 6.248 22 O -0.956 6.956 23 O -0.958 6.958 24 C -0.011 4.011 25 C -0.054 4.054 26 C -0.190 4.190 27 H 0.274 0.726 28 H 0.132 0.868 29 H 0.112 0.888 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.416 0.584 33 H 0.421 0.579 34 H 0.156 0.844 35 H 0.120 0.880 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.444 -16.993 -2.201 20.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.165 4.165 3 Si 0.769 3.231 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.469 4.469 8 H 0.114 0.886 9 O -0.065 6.065 10 C 0.106 3.894 11 C -0.255 4.255 12 C -0.066 4.066 13 C -0.175 4.175 14 C -0.017 4.017 15 C -0.071 4.071 16 C -0.176 4.176 17 C 0.136 3.864 18 F -0.106 7.106 19 C -0.784 4.784 20 S 2.792 3.208 21 N -0.923 5.923 22 O -0.945 6.945 23 O -0.947 6.947 24 C -0.030 4.030 25 C -0.072 4.072 26 C -0.209 4.209 27 H 0.084 0.916 28 H 0.149 0.851 29 H 0.130 0.870 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.243 0.757 33 H 0.251 0.749 34 H 0.173 0.827 35 H 0.137 0.863 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.430 -16.946 -1.328 19.943 hybrid contribution 1.251 1.009 -0.675 1.743 sum 11.682 -15.937 -2.003 19.861 Atomic orbital electron populations 1.70033 1.06103 1.28246 1.44139 1.25379 0.95907 0.99129 0.96074 0.85652 0.78970 0.79608 0.78904 1.19663 1.20042 1.19007 1.21433 0.92025 0.80603 1.52796 0.88636 1.83957 1.34793 1.11708 1.76053 1.19516 0.90310 0.87970 0.91569 1.21092 0.93703 0.98952 1.11730 1.20774 0.98387 0.91338 0.96114 1.18042 0.92682 0.90916 1.15844 1.19005 0.92822 0.92918 0.96943 1.21443 0.93260 0.98310 0.94090 1.21120 1.01193 0.90844 1.04417 1.16993 0.87312 0.82971 0.99162 1.91582 1.77042 1.48917 1.93041 1.30383 1.02593 1.22085 1.23351 1.01517 0.73597 0.72831 0.72854 1.52979 1.68855 1.30069 1.40395 1.93630 1.76974 1.72774 1.51153 1.93612 1.30292 1.84803 1.86004 1.20960 1.00661 0.89665 0.91688 1.20761 0.92422 0.97283 0.96775 1.20173 0.99924 0.90006 1.10842 0.91597 0.85084 0.87000 0.83913 0.83896 0.75677 0.74892 0.82689 0.86261 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.70 13.67 55.48 0.76 -22.94 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.22 29.55 -169.99 -5.02 14.20 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.39 -10.26 9.48 30.88 0.29 -9.97 16 8 H 0.10 2.27 5.19 -52.49 -0.27 2.00 16 9 O -0.16 -4.37 9.75 0.23 0.00 -4.37 16 10 C 0.16 3.63 6.65 -39.02 -0.26 3.37 16 11 C -0.24 -4.63 9.15 -39.45 -0.36 -4.99 16 12 C -0.05 -0.78 9.42 -39.28 -0.37 -1.15 16 13 C -0.17 -2.76 5.88 -104.85 -0.62 -3.37 16 14 C -0.02 -0.21 5.88 -104.89 -0.62 -0.83 16 15 C -0.05 -0.59 9.42 -39.25 -0.37 -0.96 16 16 C -0.16 -1.58 10.01 -39.57 -0.40 -1.98 16 17 C 0.16 1.76 7.21 -39.34 -0.28 1.48 16 18 F -0.13 -1.42 16.27 2.25 0.04 -1.39 16 19 C -0.70 -8.16 5.88 -39.56 -0.23 -8.39 16 20 S 2.70 29.88 5.92 -107.50 -0.64 29.24 16 21 N -1.25 -8.45 9.55 60.35 0.58 -7.87 16 22 O -0.96 -13.57 17.44 -57.17 -1.00 -14.57 16 23 O -0.96 -13.02 16.96 -57.17 -0.97 -13.99 16 24 C -0.01 -0.14 8.92 -39.25 -0.35 -0.49 16 25 C -0.05 -0.90 9.42 -39.28 -0.37 -1.27 16 26 C -0.19 -3.73 9.98 -39.44 -0.39 -4.12 16 27 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.13 2.55 5.62 -52.49 -0.30 2.26 16 29 H 0.11 1.44 6.20 -52.48 -0.33 1.11 16 30 H 0.14 1.30 6.20 -52.48 -0.33 0.98 16 31 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 32 H 0.42 1.99 8.92 -34.46 -0.31 1.68 16 33 H 0.42 1.96 8.96 -34.46 -0.31 1.65 16 34 H 0.16 1.89 5.47 -52.48 -0.29 1.60 16 35 H 0.12 1.67 6.20 -52.49 -0.33 1.34 16 36 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 LS Contribution 330.41 15.07 4.98 4.98 Total: -1.00 -33.39 330.41 -8.12 -41.51 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -2.43 Total: 6.89 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: -4.42 Total: -31.70 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 1.33 Total: -30.81 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -1.96 Total: -32.93 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Atomic # 16 Polarization: 29.88 SS G_CDS: -0.64 Total: 29.24 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.39 -8.12 -41.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592812.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.717 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds