Wall clock time and date at job start Tue Mar 31 2020 20:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86800 * 119.99516 * 2 1 4 4 H 1.48491 * 109.47541 * 270.00187 * 3 2 1 5 5 H 1.48500 * 109.47190 * 30.00366 * 3 2 1 6 6 H 1.48504 * 109.47026 * 149.99927 * 3 2 1 7 7 C 1.38639 * 120.00531 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00099 * 180.02562 * 7 2 1 9 9 O 1.34824 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.35696 * 116.99763 * 185.05817 * 9 7 2 11 11 C 1.39000 * 119.95068 * 354.44710 * 10 9 7 12 12 C 1.37836 * 120.05248 * 179.97438 * 11 10 9 13 13 C 1.39442 * 119.94897 * 359.97438 * 12 11 10 14 14 C 1.48316 * 120.05324 * 179.97438 * 13 12 11 15 15 C 1.39415 * 120.09855 * 0.02562 * 14 13 12 16 16 C 1.37939 * 119.90141 * 179.97438 * 15 14 13 17 17 C 1.38577 * 120.09686 * 0.25769 * 16 15 14 18 18 F 1.35100 * 119.90110 * 179.72329 * 17 16 15 19 19 C 1.38541 * 120.20285 * 359.48546 * 17 16 15 20 20 S 1.76199 * 119.95403 * 180.23669 * 19 17 16 21 21 N 1.65593 * 107.21690 * 295.27724 * 20 19 17 22 22 O 1.42098 * 106.40149 * 48.81786 * 20 19 17 23 23 O 1.42097 * 106.40036 * 181.73426 * 20 19 17 24 24 C 1.37984 * 120.09370 * 0.51311 * 19 17 16 25 25 C 1.39441 * 119.89365 * 0.25309 * 13 12 11 26 26 C 1.37840 * 119.94481 * 359.51280 * 25 13 12 27 27 H 0.96997 * 120.00309 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.96875 * 359.97438 * 11 10 9 29 29 H 1.08004 * 120.02380 * 179.97438 * 12 11 10 30 30 H 1.08004 * 120.04889 * 359.94973 * 15 14 13 31 31 H 1.07999 * 119.95500 * 179.97438 * 16 15 14 32 32 H 0.96996 * 119.99943 * 359.97438 * 21 20 19 33 33 H 0.97002 * 119.99872 * 180.02562 * 21 20 19 34 34 H 1.08007 * 120.04855 * 179.72616 * 24 19 17 35 35 H 1.07994 * 120.02767 * 179.72213 * 25 13 12 36 36 H 1.07999 * 119.97173 * 180.23059 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0466 -1.4000 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4403 0.7001 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2005 -0.0001 9 8 1.3349 -2.3682 -0.0016 10 6 2.0699 -3.5039 0.1045 11 6 3.4582 -3.4358 0.0915 12 6 4.2069 -4.5880 0.1997 13 6 3.5706 -5.8227 0.3228 14 6 4.3740 -7.0640 0.4388 15 6 5.7666 -6.9993 0.4256 16 6 6.5097 -8.1563 0.5343 17 6 5.8741 -9.3821 0.6511 18 9 6.6058 -10.5134 0.7517 19 6 4.4905 -9.4508 0.6701 20 16 3.6891 -11.0123 0.8251 21 7 4.0549 -11.8878 -0.5320 22 8 4.3151 -11.6782 1.9132 23 8 2.2929 -10.7537 0.7718 24 6 3.7391 -8.2985 0.5619 25 6 2.1778 -5.8889 0.3309 26 6 1.4334 -4.7335 0.2273 27 1 -0.4850 0.8400 0.0004 28 1 3.9505 -2.4792 -0.0034 29 1 5.2856 -4.5346 0.1891 30 1 6.2628 -6.0448 0.3300 31 1 7.5885 -8.1073 0.5237 32 1 4.6191 -11.5024 -1.2203 33 1 3.7042 -12.7859 -0.6389 34 1 2.6604 -8.3533 0.5723 35 1 1.6828 -6.8444 0.4216 36 1 0.3546 -4.7840 0.2372 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243592812.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:46 Heat of formation + Delta-G solvation = -117.102946 kcal Electronic energy + Delta-G solvation = -25328.801413 eV Core-core repulsion = 21205.291862 eV Total energy + Delta-G solvation = -4123.509552 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.29642 -41.10369 -40.10447 -38.28613 -38.00779 -37.02895 -34.40930 -34.15121 -33.01200 -32.77174 -31.74073 -29.11478 -27.36474 -25.20818 -24.41581 -23.10698 -22.35481 -20.60010 -19.93106 -19.66911 -18.84310 -18.56042 -18.43071 -17.74218 -17.18503 -16.90499 -16.53255 -16.46206 -16.11730 -15.94987 -15.65376 -15.58444 -15.14413 -14.78477 -14.36854 -14.31055 -14.09944 -13.64424 -13.55329 -13.38322 -13.29233 -13.26851 -13.15736 -13.00768 -12.58696 -12.55974 -12.27918 -12.12821 -11.83691 -11.42650 -11.16919 -10.96147 -10.67182 -10.20460 -9.88827 -8.65083 -8.49866 -6.16985 -0.78663 -0.57912 -0.22664 0.54987 0.78580 1.36618 1.45330 1.54010 1.99752 2.16299 2.21632 2.52872 2.83814 2.87995 3.17716 3.25812 3.44304 3.56003 3.77989 3.90493 4.00640 4.09087 4.18258 4.38263 4.47346 4.60909 4.66132 4.72226 4.89206 5.01410 5.02038 5.19979 5.20785 5.23242 5.45238 5.64028 5.64632 5.70824 5.98938 6.09167 6.26920 6.94452 7.72580 8.72620 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.027026 B = 0.002366 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.800701 B =11830.462246 C =12680.604717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.022 4.022 3 Si 1.020 2.980 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.250 1.250 7 C -0.414 4.414 8 H 0.109 0.891 9 O -0.225 6.225 10 C 0.124 3.876 11 C -0.240 4.240 12 C -0.046 4.046 13 C -0.143 4.143 14 C -0.043 4.043 15 C -0.036 4.036 16 C -0.150 4.150 17 C 0.165 3.835 18 F -0.124 7.124 19 C -0.703 4.703 20 S 2.723 3.277 21 N -1.231 6.231 22 O -0.989 6.989 23 O -0.987 6.987 24 C -0.013 4.013 25 C -0.057 4.057 26 C -0.203 4.203 27 H 0.274 0.726 28 H 0.129 0.871 29 H 0.158 0.842 30 H 0.171 0.829 31 H 0.179 0.821 32 H 0.428 0.572 33 H 0.433 0.567 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.687 -19.271 -2.445 24.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.220 4.220 3 Si 0.839 3.161 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.173 1.173 7 C -0.490 4.490 8 H 0.126 0.874 9 O -0.131 6.131 10 C 0.072 3.928 11 C -0.259 4.259 12 C -0.063 4.063 13 C -0.144 4.144 14 C -0.045 4.045 15 C -0.054 4.054 16 C -0.169 4.169 17 C 0.144 3.856 18 F -0.103 7.103 19 C -0.790 4.790 20 S 2.811 3.189 21 N -0.912 5.912 22 O -0.978 6.978 23 O -0.976 6.976 24 C -0.032 4.032 25 C -0.075 4.075 26 C -0.222 4.222 27 H 0.083 0.917 28 H 0.147 0.853 29 H 0.175 0.825 30 H 0.188 0.812 31 H 0.197 0.803 32 H 0.258 0.742 33 H 0.266 0.734 34 H 0.173 0.827 35 H 0.164 0.836 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 14.721 -19.313 -1.579 24.335 hybrid contribution 0.238 1.045 -0.584 1.220 sum 14.959 -18.269 -2.163 23.711 Atomic orbital electron populations 1.70184 1.08157 1.29000 1.48224 1.26630 0.96811 1.02902 0.95653 0.84570 0.77904 0.74381 0.79288 1.18759 1.19906 1.17295 1.21902 0.92771 0.81165 1.53140 0.87423 1.83939 1.36252 1.12744 1.80130 1.20059 0.91828 0.87786 0.93100 1.21244 0.92777 1.00338 1.11542 1.21180 1.00479 0.89979 0.94706 1.18415 0.92538 0.92168 1.11256 1.18899 0.93867 0.91655 1.00042 1.21762 0.92080 0.99963 0.91546 1.21495 1.02996 0.89593 1.02797 1.17251 0.87150 0.83641 0.97577 1.91605 1.76874 1.48971 1.92805 1.30310 1.03033 1.21720 1.23972 1.00702 0.72716 0.72506 0.72978 1.52574 1.68914 1.30365 1.39347 1.93598 1.77374 1.73477 1.53342 1.93583 1.32172 1.85209 1.86625 1.21007 1.00959 0.89899 0.91310 1.21101 0.93218 0.97287 0.95921 1.20373 1.00183 0.90384 1.11257 0.91731 0.85344 0.82494 0.81207 0.80325 0.74174 0.73391 0.82737 0.83558 0.86531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.85 13.67 21.61 0.30 -54.55 16 2 C -0.02 -1.19 5.49 84.83 0.47 -0.73 16 3 Si 1.02 40.84 29.55 68.60 2.03 42.86 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 7 C -0.41 -22.92 9.48 67.92 0.64 -22.27 16 8 H 0.11 5.34 5.19 -2.91 -0.02 5.32 16 9 O -0.22 -12.96 9.75 -22.08 -0.22 -13.18 16 10 C 0.12 5.80 6.65 22.64 0.15 5.95 16 11 C -0.24 -9.40 9.15 22.36 0.20 -9.20 16 12 C -0.05 -1.35 9.42 22.46 0.21 -1.14 16 13 C -0.14 -4.12 5.88 -20.01 -0.12 -4.24 16 14 C -0.04 -0.99 5.88 -20.04 -0.12 -1.10 16 15 C -0.04 -0.59 9.42 22.48 0.21 -0.38 16 16 C -0.15 -2.15 10.01 22.28 0.22 -1.93 16 17 C 0.16 2.97 7.21 22.42 0.16 3.13 16 18 F -0.12 -2.25 16.27 44.97 0.73 -1.52 16 19 C -0.70 -14.11 5.88 22.28 0.13 -13.98 16 20 S 2.72 54.21 5.92 -56.49 -0.33 53.87 16 21 N -1.23 -13.18 9.55 37.02 0.35 -12.83 16 22 O -0.99 -26.18 17.44 -128.00 -2.23 -28.41 16 23 O -0.99 -25.38 16.96 -128.00 -2.17 -27.55 16 24 C -0.01 -0.28 8.92 22.48 0.20 -0.08 16 25 C -0.06 -1.86 9.42 22.47 0.21 -1.64 16 26 C -0.20 -8.24 9.98 22.36 0.22 -8.02 16 27 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 28 H 0.13 5.03 5.62 -2.91 -0.02 5.01 16 29 H 0.16 3.18 6.20 -2.91 -0.02 3.16 16 30 H 0.17 1.90 6.20 -2.91 -0.02 1.88 16 31 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 32 H 0.43 2.64 8.92 -96.75 -0.86 1.78 16 33 H 0.43 2.86 8.96 -96.75 -0.87 1.99 16 34 H 0.16 3.41 5.47 -2.91 -0.02 3.40 16 35 H 0.15 3.86 6.20 -2.91 -0.02 3.84 16 36 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -78.75 330.41 0.73 -78.02 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -0.53 Total: 18.92 kcal Atomic # 6 Polarization: -58.44 SS G_CDS: 2.80 Total: -55.64 kcal Atomic # 7 Polarization: -68.03 SS G_CDS: 0.65 Total: -67.38 kcal Atomic # 8 Polarization: -64.52 SS G_CDS: -4.62 Total: -69.14 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.73 Total: -1.52 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.86 kcal Atomic # 16 Polarization: 54.21 SS G_CDS: -0.33 Total: 53.87 kcal Total: -78.75 0.73 -78.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592812.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.085 kcal (2) G-P(sol) polarization free energy of solvation -78.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds